-
1
-
-
84892477278
-
-
IUPAC, Research Triagle Park, NC, Available from:, M. Nič, J. Jirát, B. Košata, A. Jenkins, A. McNaught (Eds.)
-
Repeatability. IUPAC compendium of chemical terminology [internet] 2012, IUPAC, Research Triagle Park, NC, Available from: http://goldbook.iupac.org/R05293.html. 2.1.0 ed. M. Nič, J. Jirát, B. Košata, A. Jenkins, A. McNaught (Eds.).
-
(2012)
Repeatability. IUPAC compendium of chemical terminology [internet]
-
-
-
2
-
-
60149106150
-
Quality by design for biopharmaceuticals
-
Rathore A.S., Winkle H. Quality by design for biopharmaceuticals. Nat Biotechnol Jan. 2009, 27(1):26-34.
-
(2009)
Nat Biotechnol
, vol.27
, Issue.1
, pp. 26-34
-
-
Rathore, A.S.1
Winkle, H.2
-
3
-
-
43349088601
-
Pharmaceutical quality by design: product and process development, understanding, and control
-
Yu L.X. Pharmaceutical quality by design: product and process development, understanding, and control. Pharm Res Apr. 2008, 25(4):781-791.
-
(2008)
Pharm Res
, vol.25
, Issue.4
, pp. 781-791
-
-
Yu, L.X.1
-
4
-
-
78650201043
-
Towards the implementation of quality by design to the production of therapeutic monoclonal antibodies with desired glycosylation patterns
-
Del Val I.J., Kontoravdi C., Nagy J.M. Towards the implementation of quality by design to the production of therapeutic monoclonal antibodies with desired glycosylation patterns. Biotechnol Prog Dec. 2010, 26(6):1505-1527.
-
(2010)
Biotechnol Prog
, vol.26
, Issue.6
, pp. 1505-1527
-
-
Del Val, I.J.1
Kontoravdi, C.2
Nagy, J.M.3
-
5
-
-
1942438016
-
Rules of evidence for cancer molecular-marker discovery and validation
-
Ransohoff D.F. Rules of evidence for cancer molecular-marker discovery and validation. Nat Rev Cancer Apr. 2004, 4(4):309-314.
-
(2004)
Nat Rev Cancer
, vol.4
, Issue.4
, pp. 309-314
-
-
Ransohoff, D.F.1
-
6
-
-
44249092618
-
Mass spectrometry is only one piece of the puzzle in clinical proteomics
-
McGuire J.N., Overgaard J., Pociot F. Mass spectrometry is only one piece of the puzzle in clinical proteomics. Brief Funct Genomic Proteomic Jan. 2008, 7(1):74-83.
-
(2008)
Brief Funct Genomic Proteomic
, vol.7
, Issue.1
, pp. 74-83
-
-
McGuire, J.N.1
Overgaard, J.2
Pociot, F.3
-
7
-
-
40549141833
-
Design and analysis issues in quantitative proteomics studies
-
Karp N.A., Lilley K.S. Design and analysis issues in quantitative proteomics studies. Proteomics Sep. 2007, 7(Suppl. 1):42-50.
-
(2007)
Proteomics
, vol.7
, Issue.SUPPL. 1
, pp. 42-50
-
-
Karp, N.A.1
Lilley, K.S.2
-
8
-
-
34047209848
-
Clinical proteomics: a need to define the field and to begin to set adequate standards
-
Mischak H., Apweiler R., Banks R.E., Conaway M., Coon J., Dominiczak A., et al. Clinical proteomics: a need to define the field and to begin to set adequate standards. Proteomics Clin Appl Feb. 2007, 1(2):148-156.
-
(2007)
Proteomics Clin Appl
, vol.1
, Issue.2
, pp. 148-156
-
-
Mischak, H.1
Apweiler, R.2
Banks, R.E.3
Conaway, M.4
Coon, J.5
Dominiczak, A.6
-
9
-
-
66349102222
-
Evaluation and recommendations on good clinical laboratory practice guidelines for phase I-III clinical trials
-
Sarzotti-Kelsoe M., Cox J., Cleland N., Denny T., Hural J., Needham L., et al. Evaluation and recommendations on good clinical laboratory practice guidelines for phase I-III clinical trials. PLoS Med May 26 2009, 6(5):e1000067.
-
(2009)
PLoS Med
, vol.6
, Issue.5
-
-
Sarzotti-Kelsoe, M.1
Cox, J.2
Cleland, N.3
Denny, T.4
Hural, J.5
Needham, L.6
-
10
-
-
38649129380
-
Analyzing large-scale proteomics projects with latent semantic indexing
-
Klie S., Martens L., Vizcaíno J.A., CÔté R., Jones P., Apweiler R., et al. Analyzing large-scale proteomics projects with latent semantic indexing. J Proteome Res Jan. 2008, 7(1):182-191.
-
(2008)
J Proteome Res
, vol.7
, Issue.1
, pp. 182-191
-
-
Klie, S.1
Martens, L.2
Vizcaíno, J.A.3
CÔté, R.4
Jones, P.5
Apweiler, R.6
-
11
-
-
67349196123
-
A HUPO test sample study reveals common problems in mass spectrometry-based proteomics
-
Bell A.W., Deutsch E.W., Au C.E., Kearney R.E., Beavis R., Sechi S., et al. A HUPO test sample study reveals common problems in mass spectrometry-based proteomics. Nat Methods Jun. 2009, 6(6):423-430.
-
(2009)
Nat Methods
, vol.6
, Issue.6
, pp. 423-430
-
-
Bell, A.W.1
Deutsch, E.W.2
Au, C.E.3
Kearney, R.E.4
Beavis, R.5
Sechi, S.6
-
12
-
-
79953677186
-
The ABRF Proteomics Research Group studies: educational exercises for qualitative and quantitative proteomic analyses
-
Friedman D.B., Andacht T.M., Bunger M.K., Chien A.S., Hawke D.H., Krijgsveld J., et al. The ABRF Proteomics Research Group studies: educational exercises for qualitative and quantitative proteomic analyses. Proteomics Apr. 2011, 11(8):1371-1381.
-
(2011)
Proteomics
, vol.11
, Issue.8
, pp. 1371-1381
-
-
Friedman, D.B.1
Andacht, T.M.2
Bunger, M.K.3
Chien, A.S.4
Hawke, D.H.5
Krijgsveld, J.6
-
13
-
-
70349617072
-
Comparative analysis to guide quality improvements in proteomics
-
Mann M. Comparative analysis to guide quality improvements in proteomics. Nat Methods Oct. 2009, 6(10):717-719.
-
(2009)
Nat Methods
, vol.6
, Issue.10
, pp. 717-719
-
-
Mann, M.1
-
14
-
-
34948866795
-
How shall we use the proteomics toolbox for biomarker discovery?
-
Lescuyer P., Hochstrasser D., Rabilloud T. How shall we use the proteomics toolbox for biomarker discovery?. J Proteome Res Sep. 2007, 6(9):3371-3376.
-
(2007)
J Proteome Res
, vol.6
, Issue.9
, pp. 3371-3376
-
-
Lescuyer, P.1
Hochstrasser, D.2
Rabilloud, T.3
-
15
-
-
0037116832
-
Use of proteomic patterns in serum to identify ovarian cancer
-
Petricoin E.F., Ardekani A.M., Hitt B.A., Levine P.J., Fusaro V.A., Steinberg S.M., et al. Use of proteomic patterns in serum to identify ovarian cancer. Lancet Feb. 16 2002, 359(9306):572-577.
-
(2002)
Lancet
, vol.359
, Issue.9306
, pp. 572-577
-
-
Petricoin, E.F.1
Ardekani, A.M.2
Hitt, B.A.3
Levine, P.J.4
Fusaro, V.A.5
Steinberg, S.M.6
-
16
-
-
13844316757
-
Signal in noise: evaluating reported reproducibility of serum proteomic tests for ovarian cancer
-
Baggerly K.A., Morris J.S., Edmonson S.R., Coombes K.R. Signal in noise: evaluating reported reproducibility of serum proteomic tests for ovarian cancer. J Natl Cancer Inst Feb. 16 2005, 97(4):307-309.
-
(2005)
J Natl Cancer Inst
, vol.97
, Issue.4
, pp. 307-309
-
-
Baggerly, K.A.1
Morris, J.S.2
Edmonson, S.R.3
Coombes, K.R.4
-
17
-
-
18544387899
-
Reproducible research: a bioinformatics case study
-
[Article 2]
-
Gentleman R. Reproducible research: a bioinformatics case study. Stat Appl Genet Mol Biol 2005, 4. [Article 2].
-
(2005)
Stat Appl Genet Mol Biol
, pp. 4
-
-
Gentleman, R.1
-
18
-
-
34547176285
-
Proteomics data validation: why all must provide data
-
Martens L., Hermjakob H. Proteomics data validation: why all must provide data. Mol Biosyst Aug. 2007, 3(8):518-522.
-
(2007)
Mol Biosyst
, vol.3
, Issue.8
, pp. 518-522
-
-
Martens, L.1
Hermjakob, H.2
-
19
-
-
67650382229
-
Recommendations from the 2008 international summit on proteomics data release and sharing policy: the Amsterdam principles
-
Rodriguez H., Snyder M., Uhlén M., Andrews P., Beavis R., Borchers C., et al. Recommendations from the 2008 international summit on proteomics data release and sharing policy: the Amsterdam principles. J Proteome Res Jul. 2009, 8(7):3689-3692.
-
(2009)
J Proteome Res
, vol.8
, Issue.7
, pp. 3689-3692
-
-
Rodriguez, H.1
Snyder, M.2
Uhlén, M.3
Andrews, P.4
Beavis, R.5
Borchers, C.6
-
20
-
-
70449448457
-
MCP ups the ante by mandating raw-data deposition
-
Cottingham K. MCP ups the ante by mandating raw-data deposition. J Proteome Res Nov. 2009, 8(11):4887-4888.
-
(2009)
J Proteome Res
, vol.8
, Issue.11
, pp. 4887-4888
-
-
Cottingham, K.1
-
21
-
-
83055168460
-
Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam principles)
-
[O111.015446]
-
Kinsinger C.R., Apffel J., Baker M., Bian X., Borchers C.H., Bradshaw R., et al. Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam principles). Mol Cell Proteomics Dec. 2011, 10(12). [O111.015446].
-
(2011)
Mol Cell Proteomics
, vol.10
, Issue.12
-
-
Kinsinger, C.R.1
Apffel, J.2
Baker, M.3
Bian, X.4
Borchers, C.H.5
Bradshaw, R.6
-
22
-
-
78651082595
-
MzML-a community standard for mass spectrometry data
-
[R110.000133]
-
Martens L., Chambers M., Sturm M., Kessner D., Levander F., Shofstahl J., et al. mzML-a community standard for mass spectrometry data. Mol Cell Proteomics Jan. 2011, 10(1). [R110.000133].
-
(2011)
Mol Cell Proteomics
, vol.10
, Issue.1
-
-
Martens, L.1
Chambers, M.2
Sturm, M.3
Kessner, D.4
Levander, F.5
Shofstahl, J.6
-
23
-
-
84859868686
-
The mzIdentML data standard for mass spectrometry-based proteomics results
-
[M111.014381]
-
Jones A.R., Eisenacher M., Mayer G., Kohlbacher O., Siepen J., Hubbard S.J., et al. The mzIdentML data standard for mass spectrometry-based proteomics results. Mol Cell Proteomics Jul. 2012, 11(7). [M111.014381].
-
(2012)
Mol Cell Proteomics
, vol.11
, Issue.7
-
-
Jones, A.R.1
Eisenacher, M.2
Mayer, G.3
Kohlbacher, O.4
Siepen, J.5
Hubbard, S.J.6
-
24
-
-
84859843750
-
TraML-a standard format for exchange of selected reaction monitoring transition lists
-
[R111.015040]
-
Deutsch E.W., Chambers M., Neumann S., Levander F., Binz P.-A., Shofstahl J., et al. TraML-a standard format for exchange of selected reaction monitoring transition lists. Mol Cell Proteomics Apr. 2012, 11(4). [R111.015040].
-
(2012)
Mol Cell Proteomics
, vol.11
, Issue.4
-
-
Deutsch, E.W.1
Chambers, M.2
Neumann, S.3
Levander, F.4
Binz, P.-A.5
Shofstahl, J.6
-
25
-
-
79952296069
-
Quality control in LC-MS/MS
-
Köcher T., Pichler P., Swart R., Mechtler K. Quality control in LC-MS/MS. Proteomics Mar. 2011, 11(6):1026-1030.
-
(2011)
Proteomics
, vol.11
, Issue.6
, pp. 1026-1030
-
-
Köcher, T.1
Pichler, P.2
Swart, R.3
Mechtler, K.4
-
26
-
-
67650602912
-
Approaching clinical proteomics: current state and future fields of application in fluid proteomics
-
Apweiler R., Aslanidis C., Deufel T., Gerstner A., Hansen J., Hochstrasser D., et al. Approaching clinical proteomics: current state and future fields of application in fluid proteomics. Clin Chem Lab Med 2009, 47(6):724-744.
-
(2009)
Clin Chem Lab Med
, vol.47
, Issue.6
, pp. 724-744
-
-
Apweiler, R.1
Aslanidis, C.2
Deufel, T.3
Gerstner, A.4
Hansen, J.5
Hochstrasser, D.6
-
27
-
-
70350214790
-
Assessing the use of thermal treatment to preserve the intact proteomes of post-mortem heart and brain tissue
-
Robinson A.A., Westbrook J.A., English J.A., Borén M., Dunn M.J. Assessing the use of thermal treatment to preserve the intact proteomes of post-mortem heart and brain tissue. Proteomics Oct. 2009, 9(19):4433-4444.
-
(2009)
Proteomics
, vol.9
, Issue.19
, pp. 4433-4444
-
-
Robinson, A.A.1
Westbrook, J.A.2
English, J.A.3
Borén, M.4
Dunn, M.J.5
-
28
-
-
38049025746
-
The significance of biochemical and molecular sample integrity in brain proteomics and peptidomics: stathmin 2-20 and peptides as sample quality indicators
-
Sköld K., Svensson M., Norrman M., Sjögren B., Svenningsson P., Andrén P.E. The significance of biochemical and molecular sample integrity in brain proteomics and peptidomics: stathmin 2-20 and peptides as sample quality indicators. Proteomics Dec. 2007, 7(24):4445-4456.
-
(2007)
Proteomics
, vol.7
, Issue.24
, pp. 4445-4456
-
-
Sköld, K.1
Svensson, M.2
Norrman, M.3
Sjögren, B.4
Svenningsson, P.5
Andrén, P.E.6
-
29
-
-
0037114993
-
Proteolysis during the isoelectric focusing step of two-dimensional gel electrophoresis may be a common problem
-
Finnie C., Svensson B. Proteolysis during the isoelectric focusing step of two-dimensional gel electrophoresis may be a common problem. Anal Biochem Dec. 15 2002, 311(2):182-186.
-
(2002)
Anal Biochem
, vol.311
, Issue.2
, pp. 182-186
-
-
Finnie, C.1
Svensson, B.2
-
30
-
-
70350214676
-
Preserving the yeast proteome from sample degradation
-
Grassl J., Westbrook J.A., Robinson A., Borén M., Dunn M.J., Clyne R.K. Preserving the yeast proteome from sample degradation. Proteomics Oct. 2009, 9(20):4616-4626.
-
(2009)
Proteomics
, vol.9
, Issue.20
, pp. 4616-4626
-
-
Grassl, J.1
Westbrook, J.A.2
Robinson, A.3
Borén, M.4
Dunn, M.J.5
Clyne, R.K.6
-
31
-
-
34848903890
-
The implications of proteolytic background for shotgun proteomics
-
Picotti P., Aebersold R., Domon B. The implications of proteolytic background for shotgun proteomics. Mol Cell Proteomics Sep. 2007, 6(9):1589-1598.
-
(2007)
Mol Cell Proteomics
, vol.6
, Issue.9
, pp. 1589-1598
-
-
Picotti, P.1
Aebersold, R.2
Domon, B.3
-
32
-
-
76149142168
-
Repeatability and reproducibility in proteomic identifications by liquid chromatography-tandem mass spectrometry
-
Tabb D.L., Vega-Montoto L., Rudnick P.A., Variyath A.M., Ham A.-J.L., Bunk D.M., et al. Repeatability and reproducibility in proteomic identifications by liquid chromatography-tandem mass spectrometry. J Proteome Res Feb. 5 2010, 9(2):761-776.
-
(2010)
J Proteome Res
, vol.9
, Issue.2
, pp. 761-776
-
-
Tabb, D.L.1
Vega-Montoto, L.2
Rudnick, P.A.3
Variyath, A.M.4
Ham, A.-J.L.5
Bunk, D.M.6
-
33
-
-
0035356739
-
Proteolysis in mixed organic-aqueous solvent systems: applications for peptide mass mapping using mass spectrometry
-
Russell W.K., Park Z.Y., Russell D.H. Proteolysis in mixed organic-aqueous solvent systems: applications for peptide mass mapping using mass spectrometry. Anal Chem Jun. 1 2001, 73(11):2682-2685.
-
(2001)
Anal Chem
, vol.73
, Issue.11
, pp. 2682-2685
-
-
Russell, W.K.1
Park, Z.Y.2
Russell, D.H.3
-
34
-
-
0042198976
-
Direct tissue analysis using matrix-assisted laser desorption/ionization mass spectrometry: practical aspects of sample preparation
-
Schwartz S.A., Reyzer M.L., Caprioli R.M. Direct tissue analysis using matrix-assisted laser desorption/ionization mass spectrometry: practical aspects of sample preparation. J Mass Spectrom Jul. 2003, 38(7):699-708.
-
(2003)
J Mass Spectrom
, vol.38
, Issue.7
, pp. 699-708
-
-
Schwartz, S.A.1
Reyzer, M.L.2
Caprioli, R.M.3
-
35
-
-
34848815681
-
Diagnostic accuracy of MALDI mass spectrometric analysis of unfractionated serum in lung cancer
-
Yildiz P.B., Shyr Y., Rahman J.S.M., Wardwell N.R., Zimmerman L.J., Shakhtour B., et al. Diagnostic accuracy of MALDI mass spectrometric analysis of unfractionated serum in lung cancer. J Thorac Oncol Oct. 2007, 2(10):893-901.
-
(2007)
J Thorac Oncol
, vol.2
, Issue.10
, pp. 893-901
-
-
Yildiz, P.B.1
Shyr, Y.2
Rahman, J.S.M.3
Wardwell, N.R.4
Zimmerman, L.J.5
Shakhtour, B.6
-
36
-
-
30744440918
-
Systematic evaluation of sample preparation methods for gel-based human urinary proteomics: quantity, quality, and variability
-
Thongboonkerd V., Chutipongtanate S., Kanlaya R. Systematic evaluation of sample preparation methods for gel-based human urinary proteomics: quantity, quality, and variability. J Proteome Res Jan. 2006, 5(1):183-191.
-
(2006)
J Proteome Res
, vol.5
, Issue.1
, pp. 183-191
-
-
Thongboonkerd, V.1
Chutipongtanate, S.2
Kanlaya, R.3
-
37
-
-
43549120490
-
Technical strategies to reduce the amount of "false significant" results in quantitative proteomics
-
Fuxius S., Eravci M., Broedel O., Weist S., Mansmann U., Eravci S., et al. Technical strategies to reduce the amount of "false significant" results in quantitative proteomics. Proteomics May 2008, 8(9):1780-1784.
-
(2008)
Proteomics
, vol.8
, Issue.9
, pp. 1780-1784
-
-
Fuxius, S.1
Eravci, M.2
Broedel, O.3
Weist, S.4
Mansmann, U.5
Eravci, S.6
-
38
-
-
0142151385
-
Overcoming technical variation and biological variation in quantitative proteomics
-
Molloy M.P., Brzezinski E.E., Hang J., McDowell M.T., VanBogelen R.A. Overcoming technical variation and biological variation in quantitative proteomics. Proteomics Oct. 2003, 3(10):1912-1919.
-
(2003)
Proteomics
, vol.3
, Issue.10
, pp. 1912-1919
-
-
Molloy, M.P.1
Brzezinski, E.E.2
Hang, J.3
McDowell, M.T.4
VanBogelen, R.A.5
-
39
-
-
34547159253
-
Sample size and replication in 2D gel electrophoresis studies
-
Horgan G.W. Sample size and replication in 2D gel electrophoresis studies. J Proteome Res Jul. 2007, 6(7):2884-2887.
-
(2007)
J Proteome Res
, vol.6
, Issue.7
, pp. 2884-2887
-
-
Horgan, G.W.1
-
40
-
-
20844446602
-
Optimal replication and the importance of experimental design for gel-based quantitative proteomics
-
Hunt S.M.N., Thomas M.R., Sebastian L.T., Pedersen S.K., Harcourt R.L., Sloane A.J., et al. Optimal replication and the importance of experimental design for gel-based quantitative proteomics. J Proteome Res Jun. 2005, 4(3):809-819.
-
(2005)
J Proteome Res
, vol.4
, Issue.3
, pp. 809-819
-
-
Hunt, S.M.N.1
Thomas, M.R.2
Sebastian, L.T.3
Pedersen, S.K.4
Harcourt, R.L.5
Sloane, A.J.6
-
41
-
-
34548409217
-
Experimental and statistical considerations to avoid false conclusions in proteomics studies using differential in-gel electrophoresis
-
Karp N.A., McCormick P.S., Russell M.R., Lilley K.S. Experimental and statistical considerations to avoid false conclusions in proteomics studies using differential in-gel electrophoresis. Mol Cell Proteomics Aug. 2007, 6(8):1354-1364.
-
(2007)
Mol Cell Proteomics
, vol.6
, Issue.8
, pp. 1354-1364
-
-
Karp, N.A.1
McCormick, P.S.2
Russell, M.R.3
Lilley, K.S.4
-
42
-
-
65549116582
-
Considerations for powering a clinical proteomics study: normal variability in the human plasma proteome
-
Jackson D., Herath A., Swinton J., Bramwell D., Chopra R., Hughes A., et al. Considerations for powering a clinical proteomics study: normal variability in the human plasma proteome. Proteomics Clin Appl Mar. 2009, 3(3):394-407.
-
(2009)
Proteomics Clin Appl
, vol.3
, Issue.3
, pp. 394-407
-
-
Jackson, D.1
Herath, A.2
Swinton, J.3
Bramwell, D.4
Chopra, R.5
Hughes, A.6
-
43
-
-
42049099013
-
Treatment of missing values for multivariate statistical analysis of gel-based proteomics data
-
Pedreschi R., Hertog M.L.A.T.M., Carpentier S.C., Lammertyn J., Robben J., Noben J.-P., et al. Treatment of missing values for multivariate statistical analysis of gel-based proteomics data. Proteomics Apr. 2008, 8(7):1371-1383.
-
(2008)
Proteomics
, vol.8
, Issue.7
, pp. 1371-1383
-
-
Pedreschi, R.1
Hertog, M.L.A.T.M.2
Carpentier, S.C.3
Lammertyn, J.4
Robben, J.5
Noben, J.-P.6
-
44
-
-
43549094212
-
Déjà vu in proteomics. A hit parade of repeatedly identified differentially expressed proteins
-
Petrak J., Ivanek R., Toman O., Cmejla R., Cmejlova J., Vyoral D., et al. Déjà vu in proteomics. A hit parade of repeatedly identified differentially expressed proteins. Proteomics May 2008, 8(9):1744-1749.
-
(2008)
Proteomics
, vol.8
, Issue.9
, pp. 1744-1749
-
-
Petrak, J.1
Ivanek, R.2
Toman, O.3
Cmejla, R.4
Cmejlova, J.5
Vyoral, D.6
-
45
-
-
0141615786
-
Quality control and peak finding for proteomics data collected from nipple aspirate fluid by surface-enhanced laser desorption and ionization
-
Coombes K.R., Fritsche H.A., Clarke C., Chen J.-N., Baggerly K.A., Morris J.S., et al. Quality control and peak finding for proteomics data collected from nipple aspirate fluid by surface-enhanced laser desorption and ionization. Clin Chem Oct. 2003, 49(10):1615-1623.
-
(2003)
Clin Chem
, vol.49
, Issue.10
, pp. 1615-1623
-
-
Coombes, K.R.1
Fritsche, H.A.2
Clarke, C.3
Chen, J.-N.4
Baggerly, K.A.5
Morris, J.S.6
-
46
-
-
34248334942
-
Reproducibility in protein profiling by MALDI-TOF mass spectrometry
-
Albrethsen J. Reproducibility in protein profiling by MALDI-TOF mass spectrometry. Clin Chem May 2007, 53(5):852-858.
-
(2007)
Clin Chem
, vol.53
, Issue.5
, pp. 852-858
-
-
Albrethsen, J.1
-
47
-
-
0035048372
-
Imaging mass spectrometry: a new technology for the analysis of protein expression in mammalian tissues
-
Stoeckli M., Chaurand P., Hallahan D.E., Caprioli R.M. Imaging mass spectrometry: a new technology for the analysis of protein expression in mammalian tissues. Nat Med Apr. 2001, 7(4):493-496.
-
(2001)
Nat Med
, vol.7
, Issue.4
, pp. 493-496
-
-
Stoeckli, M.1
Chaurand, P.2
Hallahan, D.E.3
Caprioli, R.M.4
-
48
-
-
33747180294
-
A suite of algorithms for the comprehensive analysis of complex protein mixtures using high-resolution LC-MS
-
Bellew M., Coram M., Fitzgibbon M., Igra M., Randolph T., Wang P., et al. A suite of algorithms for the comprehensive analysis of complex protein mixtures using high-resolution LC-MS. Bioinformatics Aug. 1 2006, 22(15):1902-1909.
-
(2006)
Bioinformatics
, vol.22
, Issue.15
, pp. 1902-1909
-
-
Bellew, M.1
Coram, M.2
Fitzgibbon, M.3
Igra, M.4
Randolph, T.5
Wang, P.6
-
49
-
-
33745828376
-
Quality control metrics for LC-MS feature detection tools demonstrated on Saccharomyces cerevisiae proteomic profiles
-
Piening B.D., Wang P., Bangur C.S., Whiteaker J., Zhang H., Feng L.-C., et al. Quality control metrics for LC-MS feature detection tools demonstrated on Saccharomyces cerevisiae proteomic profiles. J Proteome Res Jul. 2006, 5(7):1527-1534.
-
(2006)
J Proteome Res
, vol.5
, Issue.7
, pp. 1527-1534
-
-
Piening, B.D.1
Wang, P.2
Bangur, C.S.3
Whiteaker, J.4
Zhang, H.5
Feng, L.-C.6
-
50
-
-
77950669475
-
Quantitative analysis of proteome coverage and recovery rates for upstream fractionation methods in proteomics
-
Fang Y., Robinson D.P., Foster L.J. Quantitative analysis of proteome coverage and recovery rates for upstream fractionation methods in proteomics. J Proteome Res Apr. 5 2010, 9(4):1902-1912.
-
(2010)
J Proteome Res
, vol.9
, Issue.4
, pp. 1902-1912
-
-
Fang, Y.1
Robinson, D.P.2
Foster, L.J.3
-
51
-
-
61349198837
-
Evaluation of strong cation exchange versus isoelectric focusing of peptides for multidimensional liquid chromatography-tandem mass spectrometry
-
Slebos R.J.C., Brock J.W.C., Winters N.F., Stuart S.R., Martinez M.A., Li M., et al. Evaluation of strong cation exchange versus isoelectric focusing of peptides for multidimensional liquid chromatography-tandem mass spectrometry. J Proteome Res Dec. 2008, 7(12):5286-5294.
-
(2008)
J Proteome Res
, vol.7
, Issue.12
, pp. 5286-5294
-
-
Slebos, R.J.C.1
Brock, J.W.C.2
Winters, N.F.3
Stuart, S.R.4
Martinez, M.A.5
Li, M.6
-
52
-
-
33750743755
-
Robust algorithm for alignment of liquid chromatography-mass spectrometry analyses in an accurate mass and time tag data analysis pipeline
-
Jaitly N., Monroe M.E., Petyuk V.A., Clauss T.R.W., Adkins J.N., Smith R.D. Robust algorithm for alignment of liquid chromatography-mass spectrometry analyses in an accurate mass and time tag data analysis pipeline. Anal Chem Nov. 1 2006, 78(21):7397-7409.
-
(2006)
Anal Chem
, vol.78
, Issue.21
, pp. 7397-7409
-
-
Jaitly, N.1
Monroe, M.E.2
Petyuk, V.A.3
Clauss, T.R.W.4
Adkins, J.N.5
Smith, R.D.6
-
53
-
-
76749122411
-
Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomics analyses
-
Rudnick P.A., Clauser K.R., Kilpatrick L.E., Tchekhovskoi D.V., Neta P., Blonder N., et al. Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomics analyses. Mol Cell Proteomics Feb. 2010, 9(2):225-241.
-
(2010)
Mol Cell Proteomics
, vol.9
, Issue.2
, pp. 225-241
-
-
Rudnick, P.A.1
Clauser, K.R.2
Kilpatrick, L.E.3
Tchekhovskoi, D.V.4
Neta, P.5
Blonder, N.6
-
54
-
-
84863921328
-
QuaMeter: multivendor performance metrics for LC-MS/MS proteomics instrumentation
-
Ma Z.-Q., Polzin K.O., Dasari S., Chambers M.C., Schilling B., Gibson B.W., et al. QuaMeter: multivendor performance metrics for LC-MS/MS proteomics instrumentation. Anal Chem Jul. 17 2012, 84(14):5845-5850.
-
(2012)
Anal Chem
, vol.84
, Issue.14
, pp. 5845-5850
-
-
Ma, Z.-Q.1
Polzin, K.O.2
Dasari, S.3
Chambers, M.C.4
Schilling, B.5
Gibson, B.W.6
-
55
-
-
79959987570
-
ScanRanker: quality assessment of tandem mass spectra via sequence tagging
-
Ma Z.-Q., Chambers M.C., Ham A.-J.L., Cheek K.L., Whitwell C.W., Aerni H.-R., et al. ScanRanker: quality assessment of tandem mass spectra via sequence tagging. J Proteome Res Jul. 1 2011, 10(7):2896-2904.
-
(2011)
J Proteome Res
, vol.10
, Issue.7
, pp. 2896-2904
-
-
Ma, Z.-Q.1
Chambers, M.C.2
Ham, A.-J.L.3
Cheek, K.L.4
Whitwell, C.W.5
Aerni, H.-R.6
-
56
-
-
33847654762
-
MsmsEval: tandem mass spectral quality assignment for high-throughput proteomics
-
Wong J.W.H., Sullivan M.J., Cartwright H.M., Cagney G. msmsEval: tandem mass spectral quality assignment for high-throughput proteomics. BMC Bioinformatics Feb. 9 2007, 8:51.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 51
-
-
Wong, J.W.H.1
Sullivan, M.J.2
Cartwright, H.M.3
Cagney, G.4
-
57
-
-
33645708138
-
Dynamic spectrum quality assessment and iterative computational analysis of shotgun proteomic data: toward more efficient identification of post-translational modifications, sequence polymorphisms, and novel peptides
-
Nesvizhskii A.I., Roos F.F., Grossmann J., Vogelzang M., Eddes J.S., Gruissem W., et al. Dynamic spectrum quality assessment and iterative computational analysis of shotgun proteomic data: toward more efficient identification of post-translational modifications, sequence polymorphisms, and novel peptides. Mol Cell Proteomics Apr. 2006, 5(4):652-670.
-
(2006)
Mol Cell Proteomics
, vol.5
, Issue.4
, pp. 652-670
-
-
Nesvizhskii, A.I.1
Roos, F.F.2
Grossmann, J.3
Vogelzang, M.4
Eddes, J.S.5
Gruissem, W.6
-
58
-
-
1842580753
-
Improving large-scale proteomics by clustering of mass spectrometry data
-
Beer I., Barnea E., Ziv T., Admon A. Improving large-scale proteomics by clustering of mass spectrometry data. Proteomics Apr. 2004, 4(4):950-960.
-
(2004)
Proteomics
, vol.4
, Issue.4
, pp. 950-960
-
-
Beer, I.1
Barnea, E.2
Ziv, T.3
Admon, A.4
-
59
-
-
33749046638
-
Robust estimation of peptide abundance ratios and rigorous scoring of their variability and bias in quantitative shotgun proteomics
-
Pan C., Kora G., Tabb D.L., Pelletier D.A., McDonald W.H., Hurst G.B., et al. Robust estimation of peptide abundance ratios and rigorous scoring of their variability and bias in quantitative shotgun proteomics. Anal Chem Oct. 15 2006, 78(20):7110-7120.
-
(2006)
Anal Chem
, vol.78
, Issue.20
, pp. 7110-7120
-
-
Pan, C.1
Kora, G.2
Tabb, D.L.3
Pelletier, D.A.4
McDonald, W.H.5
Hurst, G.B.6
-
60
-
-
38649095350
-
A statistical model for iTRAQ data analysis
-
Hill E.G., Schwacke J.H., Comte-Walters S., Slate E.H., Oberg A.L., Eckel-Passow J.E., et al. A statistical model for iTRAQ data analysis. J Proteome Res Aug. 2008, 7(8):3091-3101.
-
(2008)
J Proteome Res
, vol.7
, Issue.8
, pp. 3091-3101
-
-
Hill, E.G.1
Schwacke, J.H.2
Comte-Walters, S.3
Slate, E.H.4
Oberg, A.L.5
Eckel-Passow, J.E.6
-
61
-
-
38649099066
-
Statistical analysis of relative labeled mass spectrometry data from complex samples using ANOVA
-
Oberg A.L., Mahoney D.W., Eckel-Passow J.E., Malone C.J., Wolfinger R.D., Hill E.G., et al. Statistical analysis of relative labeled mass spectrometry data from complex samples using ANOVA. J Proteome Res Jan. 2008, 7(1):225-233.
-
(2008)
J Proteome Res
, vol.7
, Issue.1
, pp. 225-233
-
-
Oberg, A.L.1
Mahoney, D.W.2
Eckel-Passow, J.E.3
Malone, C.J.4
Wolfinger, R.D.5
Hill, E.G.6
-
62
-
-
80052475184
-
Relative quantification: characterization of bias, variability and fold changes in mass spectrometry data from iTRAQ-labeled peptides
-
Mahoney D.W., Therneau T.M., Heppelmann C.J., Higgins L., Benson L.M., Zenka R.M., et al. Relative quantification: characterization of bias, variability and fold changes in mass spectrometry data from iTRAQ-labeled peptides. J Proteome Res Sep. 2 2011, 10(9):4325-4333.
-
(2011)
J Proteome Res
, vol.10
, Issue.9
, pp. 4325-4333
-
-
Mahoney, D.W.1
Therneau, T.M.2
Heppelmann, C.J.3
Higgins, L.4
Benson, L.M.5
Zenka, R.M.6
-
63
-
-
67650564834
-
Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma
-
Addona T.A., Abbatiello S.E., Schilling B., Skates S.J., Mani D.R., Bunk D.M., et al. Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma. Nat Biotechnol Jul. 2009, 27(7):633-641.
-
(2009)
Nat Biotechnol
, vol.27
, Issue.7
, pp. 633-641
-
-
Addona, T.A.1
Abbatiello, S.E.2
Schilling, B.3
Skates, S.J.4
Mani, D.R.5
Bunk, D.M.6
-
64
-
-
79251520339
-
Variance component analysis of a multi-site study for the reproducibility of multiple reaction monitoring measurements of peptides in human plasma
-
Xia J.Q., Sedransk N., Feng X. Variance component analysis of a multi-site study for the reproducibility of multiple reaction monitoring measurements of peptides in human plasma. PLoS One Jan. 26 2011, 6(1):e14590.
-
(2011)
PLoS One
, vol.6
, Issue.1
-
-
Xia, J.Q.1
Sedransk, N.2
Feng, X.3
-
65
-
-
78649885451
-
Platform for establishing interlaboratory reproducibility of selected reaction monitoring-based mass spectrometry peptide assays
-
Prakash A., Rezai T., Krastins B., Sarracino D., Athanas M., Russo P., et al. Platform for establishing interlaboratory reproducibility of selected reaction monitoring-based mass spectrometry peptide assays. J Proteome Res Dec. 3 2010, 9(12):6678-6688.
-
(2010)
J Proteome Res
, vol.9
, Issue.12
, pp. 6678-6688
-
-
Prakash, A.1
Rezai, T.2
Krastins, B.3
Sarracino, D.4
Athanas, M.5
Russo, P.6
-
66
-
-
84864583363
-
Interlaboratory reproducibility of selective reaction monitoring assays using multiple upfront analyte enrichment strategies
-
Prakash A., Rezai T., Krastins B., Sarracino D., Athanas M., Russo P., et al. Interlaboratory reproducibility of selective reaction monitoring assays using multiple upfront analyte enrichment strategies. J Proteome Res Aug. 3 2012, 11(8):3986-3995.
-
(2012)
J Proteome Res
, vol.11
, Issue.8
, pp. 3986-3995
-
-
Prakash, A.1
Rezai, T.2
Krastins, B.3
Sarracino, D.4
Athanas, M.5
Russo, P.6
-
67
-
-
42049089764
-
Information quality in proteomics
-
Stead D.A., Paton N.W., Missier P., Embury S.M., Hedeler C., Jin B., et al. Information quality in proteomics. Brief Bioinform Mar. 2008, 9(2):174-188.
-
(2008)
Brief Bioinform
, vol.9
, Issue.2
, pp. 174-188
-
-
Stead, D.A.1
Paton, N.W.2
Missier, P.3
Embury, S.M.4
Hedeler, C.5
Jin, B.6
-
69
-
-
84868325438
-
SIMPATIQCO: a server-based software suite which facilitates monitoring the time course of LC-MS performance metrics on Orbitrap instruments
-
Pichler P., Mazanek M., Dusberger F., Weilnböck L., Huber C.G., Stingl C., et al. SIMPATIQCO: a server-based software suite which facilitates monitoring the time course of LC-MS performance metrics on Orbitrap instruments. J Proteome Res Nov. 2 2012, 11(11):5540-5547.
-
(2012)
J Proteome Res
, vol.11
, Issue.11
, pp. 5540-5547
-
-
Pichler, P.1
Mazanek, M.2
Dusberger, F.3
Weilnböck, L.4
Huber, C.G.5
Stingl, C.6
-
71
-
-
46749145331
-
Performance characteristics of an FT MS-based workflow for label-free differential MS analysis of human plasma: standards, reproducibility, targeted feature investigation, and application to a model of controlled myocardial infarction
-
Sutton J., Richmond T., Shi X., Athanas M., Ptak C., Gerszten R., et al. Performance characteristics of an FT MS-based workflow for label-free differential MS analysis of human plasma: standards, reproducibility, targeted feature investigation, and application to a model of controlled myocardial infarction. Proteomics Clin Appl Jun. 2008, 2(6):862-881.
-
(2008)
Proteomics Clin Appl
, vol.2
, Issue.6
, pp. 862-881
-
-
Sutton, J.1
Richmond, T.2
Shi, X.3
Athanas, M.4
Ptak, C.5
Gerszten, R.6
-
72
-
-
35648980489
-
Assessing bias in experiment design for large scale mass spectrometry-based quantitative proteomics
-
Prakash A., Piening B., Whiteaker J., Zhang H., Shaffer S.A., Martin D., et al. Assessing bias in experiment design for large scale mass spectrometry-based quantitative proteomics. Mol Cell Proteomics Oct. 2007, 6(10):1741-1748.
-
(2007)
Mol Cell Proteomics
, vol.6
, Issue.10
, pp. 1741-1748
-
-
Prakash, A.1
Piening, B.2
Whiteaker, J.3
Zhang, H.4
Shaffer, S.A.5
Martin, D.6
|