Recommendations from the 2008 International Summit on proteomics data release and sharing policy: The Amsterdam principles

Journal of Proteome Research

Volumn 8, Issue 7, 2009, Pages 3689-3692

  Rodriguez, Henry ^a   Snyder, Mike ^b   Uhlén, Mathias ^c   Andrews, Phil ^d   Beavis, Ronald ^e   Borchers, Christoph ^f   Chalkley, Robert J ^g   Sang, Yun Cho ^h   Cottingham, Katie ⁱ   Dunn, Michael ^j   Dylag, Tomasz ^k   Edgar, Ron ^l   Hare, Peter ^m   Heck, Albert J R ⁿ   Hirsch, Roland F ^o   Kennedy, Karen ^p   Kolar, Patrik ^k   Kraus, Hans Joachim ^q   Mallick, Parag ^r   Nesvizhskii, Alexey ^d   Ping, Peipei ^s   Pontén, Fredrik ^t   Yang, Liming ^a   Yates, John R ^u   Stein, Stephen E ^v   Hermjakob, Henning ^w   Kinsinger, Christopher R ^a   Apweiler, Rolf ^w   more..

^a NATIONAL CANCER INSTITUTE   (United States)

^b YALE UNIVERSITY   (United States)

^c ALBANOVA UNIVERSITY CENTER   (Sweden)

^d UNIVERSITY OF MICHIGAN MEDICAL SCHOOL   (United States)

^e UNIVERSITY OF BRITISH COLUMBIA   (Canada)

^f UNIVERSITY OF VICTORIA   (Canada)

^g UNIVERSITY OF CALIFORNIA   (United States)

^h Yonsei University   (South Korea)

ⁱ AMERICAN CHEMICAL SOCIETY   (United States)

^j WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

^k EUROPEAN COMMISSION   (Belgium)

^l NATIONAL INSTITUTES OF HEALTH   (United States)

^m Nature Biotechnology   (United States)

ⁿ UTRECHT UNIVERSITY   (Netherlands)

^o U S DEPARTMENT OF ENERGY   (United States)

^p Genome Canada   (Canada)

^q Wiley VCH Verlag GmbH   (Germany)

^r UNIVERSITY OF CALIFORNIA   (United States)

^s UNIVERSITY OF CALIFORNIA   (United States)

^t UPPSALA UNIVERSITY   (Sweden)

^u SCRIPPS RESEARCH INSTITUTE   (United States)

^v NATIONAL INSTITUTE OF STANDARDS AND TECHNOLOGY   (United States)

^w EUROPEAN BIOINFORMATICS INSTITUTE   (United Kingdom)

more..

Author keywords

Amsterdam principles; Bermuda principles; Data; Open; Policy; Proteomic; Release; Resource; Sharing; Standards

Indexed keywords

ARTICLE; GENOMICS; INFORMATION PROCESSING; NATIONAL HEALTH ORGANIZATION; NETHERLANDS; POLICY; PRIORITY JOURNAL; PROTEOMICS;

ACCESS TO INFORMATION; CONGRESSES AS TOPIC; COOPERATIVE BEHAVIOR; DATA COLLECTION; GENOMICS; HUMANS; INFORMATION DISSEMINATION; PROTEOME; PROTEOMICS; PUBLIC POLICY; RESEARCH;

EID: 67650382229     PISSN: 15353893     EISSN: None     Source Type: Journal    
DOI: 10.1021/pr900023z     Document Type: Article

References (9)

1. Rodriguez, H. International Summit on Proteomics Data Release and Sharing Policy. J. Proteome Res. 2008, 7, 4609.
2. Policies on Release of Human Genomic Sequence Data; US Department of Energy Human Genome Project: Washington; http://www.ornl.gov/sci/ techresources/Human-Genome/research/bermuda. shtml [accessed 30 October 2008].
3. Ibid.
4. Sharing Data from Large-scale Biological Research Projects: A System of Tripartite Responsibility; Welllcome Trust: London, 2003; http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy-communications/ documents/web-document/wtd003207.pdf [accessed 30 October 2008].
5. Deutsch, E. mzML: A single, unifying data format for mass spectrometer output. Proteomics 2008, 8 (14), 2776-7.
6. Hermjakob, H.; Apweiler, R. The Proteomics Identifications Database (PRIDE) and the ProteomExchange Consortium: Making Proteomics Data Accessible. Expert Rev. Proteomics 2006, 3 (1), 1-3.
7. Publication Guidelines for the Analysis and Documentation of Peptide and Protein Identifications; American Society for Biochemistry and Molecular Biology. Molecular & Cellular Proteomics. http://www.mcponline.org/misc/ ParisReport-Final.shtml [accessed 31 October 2008].
8. Wilkins, M. R.; Appel, R. D.; Van Eyk, J. E.; Chung, M. C.; Görg, A.; Hecker, M.; Huber, L. A.; Langen, H.; Link, A. J.; Paik, Y. K.; Patterson, S. D.; Pennington, S. R.; Rabilloud, T.; Simpson, R. J.; Weiss, W.; Dunn, M. J. Guidelines for the next 10 years of proteomics. Proteomics 2006, 6, 4-8.
9. Human Proteome Organization. Proteomics Standards Initiative. http://www.hupo.org/research/psi/ [accessed 31 October 2008].