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Volumn 7, Issue 24, 2007, Pages 4445-4456

The significance of biochemical and molecular sample integrity in brain proteomics and peptidomics: Stathmin 2-20 and peptides as sample quality indicators

Author keywords

Brain; Peptide degradation; Peptidomics; Protein degradation; Protein phosphorylation

Indexed keywords

NEUROPEPTIDE; PROTEIN;

EID: 38049025746     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.200700142     Document Type: Article
Times cited : (103)

References (34)
  • 1
    • 2142760058 scopus 로고    scopus 로고
    • Proteomics in postgenomic neuroscience: The end of the beginning
    • Choudhary, J., Grant, S. G., Proteomics in postgenomic neuroscience: The end of the beginning. Nat. Neurosci. 2004, 7, 440-445.
    • (2004) Nat. Neurosci , vol.7 , pp. 440-445
    • Choudhary, J.1    Grant, S.G.2
  • 2
    • 0030030749 scopus 로고    scopus 로고
    • Brain monoaminergic and neuropeptidergic variations in human aging
    • Arranz, B., Blennow, K., Ekman, R., Eriksson, A. et al., Brain monoaminergic and neuropeptidergic variations in human aging. J. Neural. Transm. 1996, 103, 101-115.
    • (1996) J. Neural. Transm , vol.103 , pp. 101-115
    • Arranz, B.1    Blennow, K.2    Ekman, R.3    Eriksson, A.4
  • 3
    • 0023784340 scopus 로고
    • Are post-mortem biochemical studies of human brain worthwhile?
    • Palmer, A. M., Lowe, S. L., Francis, P. T., Bowen, D. M., Are post-mortem biochemical studies of human brain worthwhile? Biochem. Soc. Trans. 1988, 16, 472-475.
    • (1988) Biochem. Soc. Trans , vol.16 , pp. 472-475
    • Palmer, A.M.1    Lowe, S.L.2    Francis, P.T.3    Bowen, D.M.4
  • 4
    • 0023874850 scopus 로고    scopus 로고
    • Dodd, P. R., Hambley, J. W., Cowburn, R. F., Hardy, J. A., A comparison of methodologies for the study of functional transmitter neurochemistry in human brain. J. Neurochem. 1988, 50, 1333-1345.
    • Dodd, P. R., Hambley, J. W., Cowburn, R. F., Hardy, J. A., A comparison of methodologies for the study of functional transmitter neurochemistry in human brain. J. Neurochem. 1988, 50, 1333-1345.
  • 6
    • 0028812040 scopus 로고
    • Tissue pH as an indicator of mRNA preservation in human post-mortem brain
    • Kingsbury, A. E., Foster, O. J., Nisbet, A. P., Cairns, N. et al., Tissue pH as an indicator of mRNA preservation in human post-mortem brain. Brain Res. Mol. Brain Res. 1995, 28, 311-318.
    • (1995) Brain Res. Mol. Brain Res , vol.28 , pp. 311-318
    • Kingsbury, A.E.1    Foster, O.J.2    Nisbet, A.P.3    Cairns, N.4
  • 7
    • 0028845078 scopus 로고
    • The relative importance of premortem acidosis and postmortem interval for human brain gene expression studies: Selective mRNA vulnerability and comparison with their encoded proteins
    • Harrison, P. J., Heath, P. R., Eastwood, S. L., Burnet, P. W. et al., The relative importance of premortem acidosis and postmortem interval for human brain gene expression studies: Selective mRNA vulnerability and comparison with their encoded proteins. Neurosci. Lett. 1995, 200, 151-154.
    • (1995) Neurosci. Lett , vol.200 , pp. 151-154
    • Harrison, P.J.1    Heath, P.R.2    Eastwood, S.L.3    Burnet, P.W.4
  • 8
    • 0025917554 scopus 로고
    • Terminal coma affects messenger RNA detection in post mortem human temporal cortex
    • Harrison, P. J., Procter, A. W., Barton, A. J., Lowe, S. L. et al., Terminal coma affects messenger RNA detection in post mortem human temporal cortex. Brain Res. Mol. Brain Res. 1991, 9, 161-164.
    • (1991) Brain Res. Mol. Brain Res , vol.9 , pp. 161-164
    • Harrison, P.J.1    Procter, A.W.2    Barton, A.J.3    Lowe, S.L.4
  • 9
    • 0025011401 scopus 로고
    • Enzyme activities in relation to pH and lactate in postmortem brain in Alzheimer-type and other dementias
    • Yates, C. M., Butterworth, J., Tennant, M. C., Gordon, A., Enzyme activities in relation to pH and lactate in postmortem brain in Alzheimer-type and other dementias. J. Neurochem. 1990, 55, 1624-1630.
    • (1990) J. Neurochem , vol.55 , pp. 1624-1630
    • Yates, C.M.1    Butterworth, J.2    Tennant, M.C.3    Gordon, A.4
  • 10
    • 0036224579 scopus 로고    scopus 로고
    • A neuroproteomic approach to targeting neuropeptides in the brain
    • Skold, K., Svensson, M., Kaplan, A., Bjorkesten, L. et al., A neuroproteomic approach to targeting neuropeptides in the brain. Proteomics 2002, 2, 447-454.
    • (2002) Proteomics , vol.2 , pp. 447-454
    • Skold, K.1    Svensson, M.2    Kaplan, A.3    Bjorkesten, L.4
  • 12
    • 0034601620 scopus 로고    scopus 로고
    • The Stanley Foundation brain collection and Neuropathology Consortium
    • Torrey, E. F., Webster, M., Knable, M., Johnston, N., Yolken, R. H., The Stanley Foundation brain collection and Neuropathology Consortium. Schizophr. Res. 2000, 44, 151-155.
    • (2000) Schizophr. Res , vol.44 , pp. 151-155
    • Torrey, E.F.1    Webster, M.2    Knable, M.3    Johnston, N.4    Yolken, R.H.5
  • 13
    • 33745584056 scopus 로고    scopus 로고
    • Swe-Pep, a database designed for endogenous peptides and mass spectrometry
    • Falth, M., Skold, K., Norrman, M., Svensson, M. et al., Swe-Pep, a database designed for endogenous peptides and mass spectrometry. Mol. Cell. Proteomics 2006, 5, 998-1005.
    • (2006) Mol. Cell. Proteomics , vol.5 , pp. 998-1005
    • Falth, M.1    Skold, K.2    Norrman, M.3    Svensson, M.4
  • 15
    • 0033434080 scopus 로고    scopus 로고
    • Probability-based protein identification by searching sequence databases using mass spectrometry data
    • Perkins, D. N., Pappin, D. J., Creasy, D. M., Cottrell, J. S., Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 1999, 20, 3551-3567.
    • (1999) Electrophoresis , vol.20 , pp. 3551-3567
    • Perkins, D.N.1    Pappin, D.J.2    Creasy, D.M.3    Cottrell, J.S.4
  • 16
    • 0037253267 scopus 로고    scopus 로고
    • A novel experimental design for comparative two-dimensional gel analysis: Two-dimensional difference gel electrophoresis incorporating a pooled internal standard
    • Alban, A., David, S. O., Bjorkesten, L., Andersson, C. et al., A novel experimental design for comparative two-dimensional gel analysis: Two-dimensional difference gel electrophoresis incorporating a pooled internal standard. Proteomics 2003, 3, 36-44.
    • (2003) Proteomics , vol.3 , pp. 36-44
    • Alban, A.1    David, S.O.2    Bjorkesten, L.3    Andersson, C.4
  • 17
    • 0344443812 scopus 로고    scopus 로고
    • Diverse psychotomimetics act through a common signaling pathway
    • Svenningsson, P., Tzavara, E. T., Carruthers, R., Rachleff, I. et al., Diverse psychotomimetics act through a common signaling pathway. Science 2003, 302, 1412-1415.
    • (2003) Science , vol.302 , pp. 1412-1415
    • Svenningsson, P.1    Tzavara, E.T.2    Carruthers, R.3    Rachleff, I.4
  • 18
    • 0142244521 scopus 로고    scopus 로고
    • Dihydropyrimidinase related protein-2 as a biomarker for temperature and time dependent post mortem changes in the mouse brain proteome
    • Franzen, B., Yang, Y., Sunnemark, D., Wickman, M. et al., Dihydropyrimidinase related protein-2 as a biomarker for temperature and time dependent post mortem changes in the mouse brain proteome. Proteomics 2003, 3, 1920-1929.
    • (2003) Proteomics , vol.3 , pp. 1920-1929
    • Franzen, B.1    Yang, Y.2    Sunnemark, D.3    Wickman, M.4
  • 19
    • 24644511604 scopus 로고    scopus 로고
    • Oxidative stress and neuronal death/survival signaling in cerebral ischemia
    • Saito, A., Maier, C. M., Narasimhan, P., Nishi, T. et al., Oxidative stress and neuronal death/survival signaling in cerebral ischemia. Mol. Neurobiol. 2005, 31, 105-116.
    • (2005) Mol. Neurobiol , vol.31 , pp. 105-116
    • Saito, A.1    Maier, C.M.2    Narasimhan, P.3    Nishi, T.4
  • 20
    • 31444453954 scopus 로고    scopus 로고
    • Dendritic peptide release and peptide-dependent behaviours
    • Ludwig, M., Leng, G., Dendritic peptide release and peptide-dependent behaviours. Nat. Rev. Neurosci. 2006, 7, 126-136.
    • (2006) Nat. Rev. Neurosci , vol.7 , pp. 126-136
    • Ludwig, M.1    Leng, G.2
  • 21
    • 1542617840 scopus 로고    scopus 로고
    • Focused microwave irradiation of the brain preserves in vivo protein phosphorylation: Comparison with other methods of sacrifice and analysis of multiple phosphoproteins
    • O'Callaghan, J. P., Sriram, K., Focused microwave irradiation of the brain preserves in vivo protein phosphorylation: Comparison with other methods of sacrifice and analysis of multiple phosphoproteins. J. Neurosci. Methods 2004, 135, 159-168.
    • (2004) J. Neurosci. Methods , vol.135 , pp. 159-168
    • O'Callaghan, J.P.1    Sriram, K.2
  • 23
    • 10344249420 scopus 로고    scopus 로고
    • Influence of post-mortem delay and storage temperature on the immunohistochemical detection of antigens in the CNS of mice
    • Hilbig, H., Bidmon, H. J., Oppermann, O. T., Remmerbach, T., Influence of post-mortem delay and storage temperature on the immunohistochemical detection of antigens in the CNS of mice. Exp. Toxicol. Pathol. 2004, 56, 159-171.
    • (2004) Exp. Toxicol. Pathol , vol.56 , pp. 159-171
    • Hilbig, H.1    Bidmon, H.J.2    Oppermann, O.T.3    Remmerbach, T.4
  • 24
    • 0037469294 scopus 로고    scopus 로고
    • Postmortem changes in calmodulin binding proteins in muscle and lung
    • Kang, S., Kassam, N., Gauthier, M. L., O'Day, D. H., Postmortem changes in calmodulin binding proteins in muscle and lung. Forensic Sci. Int. 2003, 131, 140-147.
    • (2003) Forensic Sci. Int , vol.131 , pp. 140-147
    • Kang, S.1    Kassam, N.2    Gauthier, M.L.3    O'Day, D.H.4
  • 25
    • 2942560510 scopus 로고    scopus 로고
    • Proteins released from degenerating neurons are surrogate markers for acute brain damage
    • Siman, R., McIntosh, T. K., Soltesz, K. M., Chen, Z. et al., Proteins released from degenerating neurons are surrogate markers for acute brain damage. Neurobiol. Dis. 2004, 16, 311-320.
    • (2004) Neurobiol. Dis , vol.16 , pp. 311-320
    • Siman, R.1    McIntosh, T.K.2    Soltesz, K.M.3    Chen, Z.4
  • 26
    • 0034942907 scopus 로고    scopus 로고
    • Crucial role of calpain in hypoxic PC12 cell death: Calpain, but not caspases, mediates degradation of cytoskeletal proteins and protein kinase C-alpha and -delta
    • Yamakawa, H., Banno, Y., Nakashima, S., Yoshimura, S. et al., Crucial role of calpain in hypoxic PC12 cell death: Calpain, but not caspases, mediates degradation of cytoskeletal proteins and protein kinase C-alpha and -delta. Neurol. Res. 2001, 23, 522-530.
    • (2001) Neurol. Res , vol.23 , pp. 522-530
    • Yamakawa, H.1    Banno, Y.2    Nakashima, S.3    Yoshimura, S.4
  • 27
    • 24744472049 scopus 로고    scopus 로고
    • Beta-amyloid-induced dynamin 1 depletion in hippocampal neurons. A potential mechanism for early cognitive decline in Alzheimer disease
    • Kelly, B. L., Vassar, R., Ferreira, A., Beta-amyloid-induced dynamin 1 depletion in hippocampal neurons. A potential mechanism for early cognitive decline in Alzheimer disease. J. Biol. Chem. 2005, 280, 31746-31753.
    • (2005) J. Biol. Chem , vol.280 , pp. 31746-31753
    • Kelly, B.L.1    Vassar, R.2    Ferreira, A.3
  • 28
    • 30444451757 scopus 로고    scopus 로고
    • Protein fucosylation regulates synapsin Ia/Ib expression and neuronal morphology in primary hippocampal neurons
    • Murrey, H. E., Gama, C. I., Kalovidouris, S. A., Luo, W. I. et al., Protein fucosylation regulates synapsin Ia/Ib expression and neuronal morphology in primary hippocampal neurons. Proc. Natl. Acad. Sci. USA 2006, 103, 21-26.
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 21-26
    • Murrey, H.E.1    Gama, C.I.2    Kalovidouris, S.A.3    Luo, W.I.4
  • 29
    • 18244372680 scopus 로고    scopus 로고
    • Regulatory mechanisms of dynamin-dependent endocytosis
    • Takei, K., Yoshida, Y., Yamada, H., Regulatory mechanisms of dynamin-dependent endocytosis. J. Biochem. (Tokyo) 2005, 137, 243-247.
    • (2005) J. Biochem. (Tokyo) , vol.137 , pp. 243-247
    • Takei, K.1    Yoshida, Y.2    Yamada, H.3
  • 30
    • 0016711037 scopus 로고
    • High resolution two-dimensional electrophoresis of proteins
    • O'Farrell, P. H., High resolution two-dimensional electrophoresis of proteins. J. Biol. Chem. 1975, 250, 4007-4021.
    • (1975) J. Biol. Chem , vol.250 , pp. 4007-4021
    • O'Farrell, P.H.1
  • 31
    • 0025037798 scopus 로고
    • Neuropeptides in brain: Effects of microwave irradiation and decapitation
    • Mathe, A. A., Stenfors, C., Brodin, E., Theodorsson, E., Neuropeptides in brain: Effects of microwave irradiation and decapitation. Life Sci. 1990, 46, 287-293.
    • (1990) Life Sci , vol.46 , pp. 287-293
    • Mathe, A.A.1    Stenfors, C.2    Brodin, E.3    Theodorsson, E.4
  • 32
    • 0025609577 scopus 로고
    • Microwave irradiation increases recovery of neuropeptides from brain tissues
    • Theodorsson, E., Stenfors, C., Mathe, A. A., Microwave irradiation increases recovery of neuropeptides from brain tissues. Peptides 1990, 11, 1191-1197.
    • (1990) Peptides , vol.11 , pp. 1191-1197
    • Theodorsson, E.1    Stenfors, C.2    Mathe, A.A.3
  • 33
    • 0035189199 scopus 로고
    • Neuropeptide Y (NPY) mRNA in rat brain tissue: Effects of decapitation and high-energy microwave irradiation on post mortem stability
    • Thorsell, A., Gruber, S. H., Mathe, A. A., Heilig, M., Neuropeptide Y (NPY) mRNA in rat brain tissue: Effects of decapitation and high-energy microwave irradiation on post mortem stability. Neuropeptides 1990, 35, 168-173.
    • (1990) Neuropeptides , vol.35 , pp. 168-173
    • Thorsell, A.1    Gruber, S.H.2    Mathe, A.A.3    Heilig, M.4
  • 34
    • 26844518104 scopus 로고    scopus 로고
    • Quantitative neuropeptidomics of microwave-irradiated mouse brain and pituitary
    • Che, F. Y., Lim, J., Pan, H., Biswas, R., Fricker, L. D., Quantitative neuropeptidomics of microwave-irradiated mouse brain and pituitary. Mol. Cell. Proteomics 2005, 4, 1391-1405.
    • (2005) Mol. Cell. Proteomics , vol.4 , pp. 1391-1405
    • Che, F.Y.1    Lim, J.2    Pan, H.3    Biswas, R.4    Fricker, L.D.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.