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Volumn 19, Issue , 2013, Pages 378-385

Molecular typing of the local HIV-1 epidemic in Serbia

Author keywords

HIV 1 Serbian epidemic; Molecular diversity; Phylogenetic analyses; Transmission clusters

Indexed keywords

ADULT; ARTICLE; EPIDEMIC; FEMALE; GENETIC VARIABILITY; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS 1; HUMAN IMMUNODEFICIENCY VIRUS 1 INFECTION; MAJOR CLINICAL STUDY; MALE; MEN WHO HAVE SEX WITH MEN; MOLECULAR TYPING; NONHUMAN; PHYLOGENY; PREVALENCE; PRIORITY JOURNAL; SERBIA; SEXUAL TRANSMISSION; STRUCTURAL GENE; VIRUS TRANSMISSION;

EID: 84885188149     PISSN: 15671348     EISSN: 15677257     Source Type: Journal    
DOI: 10.1016/j.meegid.2013.06.015     Document Type: Article
Times cited : (16)

References (59)
  • 1
    • 72849114288 scopus 로고    scopus 로고
    • Quantifying differences in the tempo of human immunodeficiency virus type 1 subtype evolution
    • Abecasis A.B., Vandamme A.M., Lemey P. Quantifying differences in the tempo of human immunodeficiency virus type 1 subtype evolution. J. Virol. 2009, 83:12917-12924.
    • (2009) J. Virol. , vol.83 , pp. 12917-12924
    • Abecasis, A.B.1    Vandamme, A.M.2    Lemey, P.3
  • 2
    • 84872127915 scopus 로고    scopus 로고
    • HIV-1 subtype distribution and its demographic determinants in newly diagnosed patients in Europe suggest highly compartmentalized epidemics
    • Abecasis A.B., Wensing A.M., Paraskevis D., Vercauteren J., Theys K., Van de Vijver D.A., et al. HIV-1 subtype distribution and its demographic determinants in newly diagnosed patients in Europe suggest highly compartmentalized epidemics. Retrovirology 2013, 10:7.
    • (2013) Retrovirology , vol.10 , pp. 7
    • Abecasis, A.B.1    Wensing, A.M.2    Paraskevis, D.3    Vercauteren, J.4    Theys, K.5    Van de Vijver, D.A.6
  • 7
    • 80052409994 scopus 로고    scopus 로고
    • Transmission clustering drives the onward spread of the HIV epidemic among men who have sex with men in Quebec
    • Brenner B.G., Roger M., Stephens D., Moisi D., Hardy I., Weinberg J. Transmission clustering drives the onward spread of the HIV epidemic among men who have sex with men in Quebec. J. Infect. Dis. 2011, 204:1115-1199.
    • (2011) J. Infect. Dis. , vol.204 , pp. 1115-1199
    • Brenner, B.G.1    Roger, M.2    Stephens, D.3    Moisi, D.4    Hardy, I.5    Weinberg, J.6
  • 8
    • 34648824673 scopus 로고    scopus 로고
    • Human Immunodeficiency Virus type 1 subtype distribution in the worldwide epidemic: pathogenetic and therapeutic implications
    • Buonaguro L., Tornesello M.L., Buonaguro F.M. Human Immunodeficiency Virus type 1 subtype distribution in the worldwide epidemic: pathogenetic and therapeutic implications. J. Virol. 2007, 81:10209-10219.
    • (2007) J. Virol. , vol.81 , pp. 10209-10219
    • Buonaguro, L.1    Tornesello, M.L.2    Buonaguro, F.M.3
  • 9
    • 33846068213 scopus 로고    scopus 로고
    • HIV genetic diversity: biological and public health consequences
    • Butler I.F., Pandrea I., Marx P.A., Apetrei C. HIV genetic diversity: biological and public health consequences. Curr. HIV Res. 2007, 5:23-45.
    • (2007) Curr. HIV Res. , vol.5 , pp. 23-45
    • Butler, I.F.1    Pandrea, I.2    Marx, P.A.3    Apetrei, C.4
  • 11
    • 34250685789 scopus 로고    scopus 로고
    • Antiretroviral resistance in different HIV-1 subtypes: impact on therapy outcomes and resistance testing interpretation
    • Camacho R.J., Vandamme A.M. Antiretroviral resistance in different HIV-1 subtypes: impact on therapy outcomes and resistance testing interpretation. Curr. Opin. HIV AIDS 2007, 2:123-129.
    • (2007) Curr. Opin. HIV AIDS , vol.2 , pp. 123-129
    • Camacho, R.J.1    Vandamme, A.M.2
  • 13
    • 77956489846 scopus 로고    scopus 로고
    • Epidemiological study of phylogenetic transmission clusters in a local HIV-1 epidemic reveals distinct differences between subtype B and non-B infections
    • Chalmet K., Staelens D., Blot S., Dinakis S., Pelgrom J., Plum J. Epidemiological study of phylogenetic transmission clusters in a local HIV-1 epidemic reveals distinct differences between subtype B and non-B infections. BMC Infect. Dis. 2010, 10:262.
    • (2010) BMC Infect. Dis. , vol.10 , pp. 262
    • Chalmet, K.1    Staelens, D.2    Blot, S.3    Dinakis, S.4    Pelgrom, J.5    Plum, J.6
  • 19
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: bayesian evolutionary analysis by sampling trees
    • Drummond A.J., Rambaut A. BEAST: bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 2007, 7:214.
    • (2007) BMC Evol. Biol. , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 22
    • 84885174883 scopus 로고    scopus 로고
    • Increasing and unusual genetic diversity of HIV-1 in the UK [abstract 316]
    • Program and abstracts of the 13th Conference on Retroviruses and Opportunistic Infections (Denver). Foundation for Retrovirology and Human Health.
    • Gifford, R., De Oliveira, T., Rambaut, A., 2006. Increasing and unusual genetic diversity of HIV-1 in the UK [abstract 316]. In: Program and abstracts of the 13th Conference on Retroviruses and Opportunistic Infections (Denver). Foundation for Retrovirology and Human Health.
    • (2006)
    • Gifford, R.1    De Oliveira, T.2    Rambaut, A.3
  • 24
    • 84872972761 scopus 로고    scopus 로고
    • The prevalence of transmitted drug resistance in newly diagnosed HIV-infected individuals in Croatia: the role of transmission clusters of men who have sex with men carrying the T215S surveillance drug resistance mutation
    • Grgic I., Lepej S.Z., Lunar M.M., Poljak M., Vince A., Vrakela I.B., Planinic A., Seme K., Begovac J. The prevalence of transmitted drug resistance in newly diagnosed HIV-infected individuals in Croatia: the role of transmission clusters of men who have sex with men carrying the T215S surveillance drug resistance mutation. AIDS Res. Hum. Retrov. 2013, 29:329-336.
    • (2013) AIDS Res. Hum. Retrov. , vol.29 , pp. 329-336
    • Grgic, I.1    Lepej, S.Z.2    Lunar, M.M.3    Poljak, M.4    Vince, A.5    Vrakela, I.B.6    Planinic, A.7    Seme, K.8    Begovac, J.9
  • 26
    • 79952414942 scopus 로고    scopus 로고
    • Global trends in molecular epidemiology of HIV-1 during 2000-2007
    • Hemelaar J., Gouws E., Ghys P.D., Osmanov S. Global trends in molecular epidemiology of HIV-1 during 2000-2007. AIDS 2011, 25:679-689.
    • (2011) AIDS , vol.25 , pp. 679-689
    • Hemelaar, J.1    Gouws, E.2    Ghys, P.D.3    Osmanov, S.4
  • 27
    • 2142768288 scopus 로고    scopus 로고
    • HIV-1 pol gene variation is sufficient for reconstruction of transmissions in the era of antiretroviral therapy
    • Hué S., Clewley J.P., Cane P.A., Pillay D. HIV-1 pol gene variation is sufficient for reconstruction of transmissions in the era of antiretroviral therapy. AIDS 2004, 18:719-728.
    • (2004) AIDS , vol.18 , pp. 719-728
    • Hué, S.1    Clewley, J.P.2    Cane, P.A.3    Pillay, D.4
  • 28
    • 15444367844 scopus 로고    scopus 로고
    • Genetic analysis reveals the complex structure of HIV-1 transmission within defined risk groups
    • Hué S., Pillay D., Clewley J.P., Pybus O.G. Genetic analysis reveals the complex structure of HIV-1 transmission within defined risk groups. Proc. Natl. Acad. Sci. USA 2005, 102:4425-4429.
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 4425-4429
    • Hué, S.1    Pillay, D.2    Clewley, J.P.3    Pybus, O.G.4
  • 29
    • 33750519867 scopus 로고    scopus 로고
    • Impact of HIV-1 pol diversity on drug resistance and its clinical implications
    • Kantor R. Impact of HIV-1 pol diversity on drug resistance and its clinical implications. Curr. Opin. Infect. Dis. 2006, 19:594-606.
    • (2006) Curr. Opin. Infect. Dis. , vol.19 , pp. 594-606
    • Kantor, R.1
  • 30
    • 77951882045 scopus 로고    scopus 로고
    • Molecular epidemiology reveals long-term changes in HIV type 1 subtype B transmission in Switzerland
    • Kouyos R.D., von Wyl V., Yerly S., Boni J., Taffe P., Shah C. Molecular epidemiology reveals long-term changes in HIV type 1 subtype B transmission in Switzerland. J. Infect. Dis. 2010, 201:1488-1497.
    • (2010) J. Infect. Dis. , vol.201 , pp. 1488-1497
    • Kouyos, R.D.1    von Wyl, V.2    Yerly, S.3    Boni, J.4    Taffe, P.5    Shah, C.6
  • 33
    • 84862562395 scopus 로고    scopus 로고
    • Update on HIV-1 diversity in Africa: a decade in review
    • Lihana R.W., Ssemwanga D., Abimiku A., Ndembi N. Update on HIV-1 diversity in Africa: a decade in review. AIDS Rev. 2012, 14:83-100.
    • (2012) AIDS Rev. , vol.14 , pp. 83-100
    • Lihana, R.W.1    Ssemwanga, D.2    Abimiku, A.3    Ndembi, N.4
  • 34
    • 0033773876 scopus 로고    scopus 로고
    • Understanding the genetic diversity of HIV-1
    • McCutchan F.E. Understanding the genetic diversity of HIV-1. AIDS 2000, 14(Suppl. 3):31-44.
    • (2000) AIDS , vol.14 , Issue.SUPPL. 3 , pp. 31-44
    • McCutchan, F.E.1
  • 35
    • 45949111551 scopus 로고    scopus 로고
    • Trends in HIV/AIDS diagnoses among men who have sex with men-33 States, 2001-2006.MMWR Morb
    • Mitsch A., Hu X., McDavid Harrison K. Trends in HIV/AIDS diagnoses among men who have sex with men-33 States, 2001-2006.MMWR Morb. Mortal. Wkly Rep. 2008, 57:681-686.
    • (2008) Mortal. Wkly Rep. , vol.57 , pp. 681-686
    • Mitsch, A.1    Hu, X.2    McDavid Harrison, K.3
  • 37
    • 70349303282 scopus 로고    scopus 로고
    • The remarkable frequency of human immunodeficiency virus type 1 genetic recombination
    • Onafuwa-Nuga A., Telesnitsky A. The remarkable frequency of human immunodeficiency virus type 1 genetic recombination. Microbiol. Mol. Biol. Rev. 2009, 73:451-480.
    • (2009) Microbiol. Mol. Biol. Rev. , vol.73 , pp. 451-480
    • Onafuwa-Nuga, A.1    Telesnitsky, A.2
  • 38
    • 84860385608 scopus 로고    scopus 로고
    • Molecular typing of the recently expanding subtype B HIV-1 epidemic in Romania: evidence for local spread among MSMs in Bucharest area
    • Paraschiv S., Otelea D., Batan I., Baicus C., Magiorkinis G., Paraskevis D. Molecular typing of the recently expanding subtype B HIV-1 epidemic in Romania: evidence for local spread among MSMs in Bucharest area. Infect. Genet. Evol. 2012, 12:1052-1057.
    • (2012) Infect. Genet. Evol. , vol.12 , pp. 1052-1057
    • Paraschiv, S.1    Otelea, D.2    Batan, I.3    Baicus, C.4    Magiorkinis, G.5    Paraskevis, D.6
  • 39
    • 0000250155 scopus 로고    scopus 로고
    • Molecular epidemiology of HIV-1 infection
    • Paraskevis D., Hatzakis A. Molecular epidemiology of HIV-1 infection. AIDS Rev. 1999, 1:238-249.
    • (1999) AIDS Rev. , vol.1 , pp. 238-249
    • Paraskevis, D.1    Hatzakis, A.2
  • 42
    • 0033769416 scopus 로고    scopus 로고
    • Genetic diversity of HIV-1: The moving target
    • Peeters M., Sharp P.M. Genetic diversity of HIV-1: The moving target. AIDS 2000, 14(Suppl. 13):129-140.
    • (2000) AIDS , vol.14 , Issue.SUPPL. 13 , pp. 129-140
    • Peeters, M.1    Sharp, P.M.2
  • 44
    • 45849154165 scopus 로고    scopus 로고
    • JModelTest: phylogenetic model averaging
    • Posada D. JModelTest: phylogenetic model averaging. Mol. Biol. Evol. 2008, 25:1253-1256.
    • (2008) Mol. Biol. Evol. , vol.25 , pp. 1253-1256
    • Posada, D.1
  • 46
    • 68549090707 scopus 로고    scopus 로고
    • HIV type-1 transmission dynamics in recent seroconverters: relationship with transmission of drug resistance and viral diversity
    • Recordon-Pinson P., Anies G., Bruyand M., Neau D., Morlat P., Pellegrin J.L. HIV type-1 transmission dynamics in recent seroconverters: relationship with transmission of drug resistance and viral diversity. Antivir. Ther. 2009, 14:551-556.
    • (2009) Antivir. Ther. , vol.14 , pp. 551-556
    • Recordon-Pinson, P.1    Anies, G.2    Bruyand, M.3    Neau, D.4    Morlat, P.5    Pellegrin, J.L.6
  • 48
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F., Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 49
    • 28944450584 scopus 로고    scopus 로고
    • Choosing appropriate substitution models for the phylogenetic analysis of protein-coding sequences
    • Shapiro B., Rambaut A., Drummond A.J. Choosing appropriate substitution models for the phylogenetic analysis of protein-coding sequences. Mol. Biol. Evol. 2006, 23:7-9.
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 7-9
    • Shapiro, B.1    Rambaut, A.2    Drummond, A.J.3
  • 51
  • 54
    • 84885177834 scopus 로고    scopus 로고
    • PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4. Sinauer Associates, Sunderland, Massachusetts.
    • Swofford, D.L., 1998. PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4. Sinauer Associates, Sunderland, Massachusetts.
    • (1998)
    • Swofford, D.L.1
  • 55
    • 84870240786 scopus 로고    scopus 로고
    • Spatial accessibility and the spread of HIV-1 subtypes and recombinants
    • Tatem A.J., Hemelaar J., Gray R.R., Salemi M. Spatial accessibility and the spread of HIV-1 subtypes and recombinants. AIDS 2012, 26:2351-2360.
    • (2012) AIDS , vol.26 , pp. 2351-2360
    • Tatem, A.J.1    Hemelaar, J.2    Gray, R.R.3    Salemi, M.4
  • 56
    • 0034995449 scopus 로고    scopus 로고
    • Travel and the introduction of human immunodeficiency virus type 1 non-B subtype genetic forms into Western countries
    • Thomson M.M., Nájera R. Travel and the introduction of human immunodeficiency virus type 1 non-B subtype genetic forms into Western countries. Clin. Infect. Dis. 2001, 32:1732-1737.
    • (2001) Clin. Infect. Dis. , vol.32 , pp. 1732-1737
    • Thomson, M.M.1    Nájera, R.2
  • 57
    • 33645098601 scopus 로고    scopus 로고
    • The calculated genetic barrier for antiretroviral drug resistance substitutions is largely similar for different HIV-1 subtypes
    • van de Vijver D.A., Wensing A.M.J., Angarano G. The calculated genetic barrier for antiretroviral drug resistance substitutions is largely similar for different HIV-1 subtypes. J. Acquir. Immune. Defic. Syndr. 2006, 41:352-360.
    • (2006) J. Acquir. Immune. Defic. Syndr. , vol.41 , pp. 352-360
    • van de Vijver, D.A.1    Wensing, A.M.J.2    Angarano, G.3
  • 58
    • 84873110439 scopus 로고    scopus 로고
    • Phylogenetic and demographic characterization of HIV-1 transmission in Madrid
    • Yebra G., Holguín A., Pillay D., Hué S. Phylogenetic and demographic characterization of HIV-1 transmission in Madrid. Spain Infect. Genet. Evol. 2013, 14:232-239.
    • (2013) Spain Infect. Genet. Evol. , vol.14 , pp. 232-239
    • Yebra, G.1    Holguín, A.2    Pillay, D.3    Hué, S.4


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