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Volumn 7, Issue 6, 2012, Pages

Molecular epidemiology of HIV-1 subtypes in India: Origin and evolutionary history of the predominant subtype C

Author keywords

[No Author keywords available]

Indexed keywords

ADULT; ARTICLE; BAYES THEOREM; BLOOD SAMPLING; COHORT ANALYSIS; ENVELOPE GENE; EPIDEMIC; FEMALE; GENETIC ANALYSIS; GROUP SPECIFIC ANTIGEN GENE; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS 1; HUMAN IMMUNODEFICIENCY VIRUS 1 INFECTION; HUMAN IMMUNODEFICIENCY VIRUS 1C; INDIA; INFORMATION PROCESSING; MAJOR CLINICAL STUDY; MALE; MOLECULAR EPIDEMIOLOGY; NONHUMAN; POLYMERASE CHAIN REACTION; POPULATION GROWTH; POPULATION SIZE; PREVALENCE; RELIABILITY; SEQUENCE ANALYSIS; STRUCTURAL GENE; VIRUS GENE; VIRUS STRAIN; VIRUS TYPING;

EID: 84863109843     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0039819     Document Type: Article
Times cited : (59)

References (30)
  • 2
    • 68249140390 scopus 로고    scopus 로고
    • Global HIV-1 molecular epidemiology with special reference to genetic analysis of HIV-1 subtypes circulating in North India: functional and pathogenic implications of genetic variation
    • Neogi U, Sood V, Banerjee S, Ghosh N, Verma S, et al. (2009) Global HIV-1 molecular epidemiology with special reference to genetic analysis of HIV-1 subtypes circulating in North India: functional and pathogenic implications of genetic variation. Indian J Exp Biol 47: 424-431.
    • (2009) Indian J Exp Biol , vol.47 , pp. 424-431
    • Neogi, U.1    Sood, V.2    Banerjee, S.3    Ghosh, N.4    Verma, S.5
  • 4
    • 84863393443 scopus 로고    scopus 로고
    • Genetic architecture of HIV-1 genes circulating in North India and their functional implications
    • Neogi U, Sood V, Ronsard L, Singh J, Lata S, et al. (2011) Genetic architecture of HIV-1 genes circulating in North India and their functional implications. Indian J Med Res 134: 769-778.
    • (2011) Indian J Med Res , vol.134 , pp. 769-778
    • Neogi, U.1    Sood, V.2    Ronsard, L.3    Singh, J.4    Lata, S.5
  • 5
    • 84859783906 scopus 로고    scopus 로고
    • Higher prevalence of predicted X4-tropic strains in perinatally-infected older children with HIV-1 subtype C in India
    • Neogi U, Sahoo PN, Arumugam K, Sonnerborg A, DeCosta A, et al. (2012) Higher prevalence of predicted X4-tropic strains in perinatally-infected older children with HIV-1 subtype C in India. J Acquir Immune Defic Syndr 59: 347-353.
    • (2012) J Acquir Immune Defic Syndr , vol.59 , pp. 347-353
    • Neogi, U.1    Sahoo, P.N.2    Arumugam, K.3    Sonnerborg, A.4    DeCosta, A.5
  • 8
    • 0036168370 scopus 로고    scopus 로고
    • Genomic diversity of human immunodeficiency virus type-1 in India
    • Sahni AK, Prasad VV, Seth P, (2002) Genomic diversity of human immunodeficiency virus type-1 in India. Int J STD AIDS 13: 115-118.
    • (2002) Int J STD AIDS , vol.13 , pp. 115-118
    • Sahni, A.K.1    Prasad, V.V.2    Seth, P.3
  • 9
    • 79952414942 scopus 로고    scopus 로고
    • Global trends in molecular epidemiology of HIV-1 during 2000-2007
    • Characterisation, WHO-UNAIDS Network for HIV Isolation
    • Hemelaar J, Gouws E, Ghys PD, Osmanov S, WHO-UNAIDS Network for HIV Isolation, Characterisation (2011) Global trends in molecular epidemiology of HIV-1 during 2000-2007. AIDS 25: 679-689.
    • (2011) AIDS , vol.25 , pp. 679-689
    • Hemelaar, J.1    Gouws, E.2    Ghys, P.D.3    Osmanov, S.4
  • 10
    • 72849114288 scopus 로고    scopus 로고
    • Quantifying differences in the tempo of human immunodeficiency virus type 1 subtype evolution
    • Abecasis AB, Vandamme AM, Lemey P, (2009) Quantifying differences in the tempo of human immunodeficiency virus type 1 subtype evolution. J Virol 83: 12917-12924.
    • (2009) J Virol , vol.83 , pp. 12917-12924
    • Abecasis, A.B.1    Vandamme, A.M.2    Lemey, P.3
  • 11
    • 79952075443 scopus 로고    scopus 로고
    • HIV-1 Subtype C phylodynamics in the global epidemic
    • Novitsky V, Wang R, Lagakos S, Essex M, (2010) HIV-1 Subtype C phylodynamics in the global epidemic. Viruses 2: 33-54.
    • (2010) Viruses , vol.2 , pp. 33-54
    • Novitsky, V.1    Wang, R.2    Lagakos, S.3    Essex, M.4
  • 12
    • 4544289290 scopus 로고    scopus 로고
    • Timing and reconstruction of the most recent common ancestor of the subtype C clade of human immunodeficiency virus type 1
    • Travers SA, Clewley JP, Glynn JR, Fine PE, Crampin AC, et al. (2004) Timing and reconstruction of the most recent common ancestor of the subtype C clade of human immunodeficiency virus type 1. J Virol 78: 10501-10506.
    • (2004) J Virol , vol.78 , pp. 10501-10506
    • Travers, S.A.1    Clewley, J.P.2    Glynn, J.R.3    Fine, P.E.4    Crampin, A.C.5
  • 14
    • 79959294130 scopus 로고    scopus 로고
    • High-resolution phylogenetics and phylogeography of human immunodeficiency virus type 1 subtype C epidemic in South America
    • Véras NM, Gray RR, Brígido LF, Rodrigues R, Salemi M, (2011) High-resolution phylogenetics and phylogeography of human immunodeficiency virus type 1 subtype C epidemic in South America. J Gen Virol 92: 1698-1709.
    • (2011) J Gen Virol , vol.92 , pp. 1698-1709
    • Véras, N.M.1    Gray, R.R.2    Brígido, L.F.3    Rodrigues, R.4    Salemi, M.5
  • 15
    • 72949104925 scopus 로고    scopus 로고
    • Evolution and molecular epidemiology of subtype C HIV-1 in Zimbabwe
    • Dalai SC, de Oliveira T, Harkins GW, Kassaye SG, Lint J, et al. (2009) Evolution and molecular epidemiology of subtype C HIV-1 in Zimbabwe. AIDS 23: 2523-2532.
    • (2009) AIDS , vol.23 , pp. 2523-2532
    • Dalai, S.C.1    de Oliveira, T.2    Harkins, G.W.3    Kassaye, S.G.4    Lint, J.5
  • 16
    • 77953913628 scopus 로고    scopus 로고
    • Chronology and evolution of the HIV-1 subtype C epidemic in Ethiopia. AIDS
    • Tully DC, Wood C, (2010) Chronology and evolution of the HIV-1 subtype C epidemic in Ethiopia. AIDS. 24: 1577-1582.
    • (2010) , vol.24 , pp. 1577-1582
    • Tully, D.C.1    Wood, C.2
  • 17
    • 77949517192 scopus 로고    scopus 로고
    • The HIV-1 subtype C epidemic in South America is linked to the United Kingdom. PLoS One
    • UK Collaborative Group on HIV Drug Resistance
    • de Oliveira T, Pillay D, Gifford RJ, UK Collaborative Group on HIV Drug Resistance (2010) The HIV-1 subtype C epidemic in South America is linked to the United Kingdom. PLoS One. 5: e9311.
    • (2010) , vol.5
    • de Oliveira, T.1    Pillay, D.2    Gifford, R.J.3
  • 18
    • 50949094465 scopus 로고    scopus 로고
    • Temporal and spatial dynamics of human immunodeficiency virus type 1 circulating recombinant forms 08_BC and 07_BC in Asia
    • Tee KK, Pybus OG, Li XJ, Han X, Shang H, et al. (2008) Temporal and spatial dynamics of human immunodeficiency virus type 1 circulating recombinant forms 08_BC and 07_BC in Asia. J Virol 82: 9206-9215.
    • (2008) J Virol , vol.82 , pp. 9206-9215
    • Tee, K.K.1    Pybus, O.G.2    Li, X.J.3    Han, X.4    Shang, H.5
  • 19
    • 80053919437 scopus 로고    scopus 로고
    • Origin and dynamics of HIV-1 subtype C infection in India
    • Shen C, Craigo J, Ding M, Chen Y, Gupta P, (2011) Origin and dynamics of HIV-1 subtype C infection in India. PLoS One 6: e25956.
    • (2011) PLoS One , vol.6
    • Shen, C.1    Craigo, J.2    Ding, M.3    Chen, Y.4    Gupta, P.5
  • 20
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond AJ, Rambaut A, (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Bio 7: 214.
    • (2007) BMC Evol Bio , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 21
    • 25444441561 scopus 로고    scopus 로고
    • Polymorphism of HIV-1 gag (p17) gene from female sex workers in Calcutta, India
    • Sengupta S, Khetawat D, Jana S, Sarkar K, Bhattacharya SK, et al. (2005) Polymorphism of HIV-1 gag (p17) gene from female sex workers in Calcutta, India. Arch Virol 150: 2117-2124.
    • (2005) Arch Virol , vol.150 , pp. 2117-2124
    • Sengupta, S.1    Khetawat, D.2    Jana, S.3    Sarkar, K.4    Bhattacharya, S.K.5
  • 22
    • 53849114296 scopus 로고    scopus 로고
    • Novel HIV-1 long terminal repeat (LTR) sequences of subtype B and mosaic intersubtype B/C recombinants in North India
    • Neogi U, Sood V, Goel N, Wanchu A, Banerjea AC, (2008) Novel HIV-1 long terminal repeat (LTR) sequences of subtype B and mosaic intersubtype B/C recombinants in North India. Arch Virol 153: 1961-1966.
    • (2008) Arch Virol , vol.153 , pp. 1961-1966
    • Neogi, U.1    Sood, V.2    Goel, N.3    Wanchu, A.4    Banerjea, A.C.5
  • 23
    • 0032889281 scopus 로고    scopus 로고
    • Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination
    • Lole KS, Bollinger RC, Paranjape RS, Gadkari D, Kulkarni SS, et al. (1999) Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J Virol 73: 152-160.
    • (1999) J Virol , vol.73 , pp. 152-160
    • Lole, K.S.1    Bollinger, R.C.2    Paranjape, R.S.3    Gadkari, D.4    Kulkarni, S.S.5
  • 24
    • 29144534206 scopus 로고    scopus 로고
    • Identification of unique B/C recombinant strains of HIV-1 in the southern state of Karnataka, India
    • Siddappa NB, Dash PK, Mahadevan A, Desai A, Jayasuryan N, et al. (2005) Identification of unique B/C recombinant strains of HIV-1 in the southern state of Karnataka, India. AIDS 19: 1426-1429.
    • (2005) AIDS , vol.19 , pp. 1426-1429
    • Siddappa, N.B.1    Dash, P.K.2    Mahadevan, A.3    Desai, A.4    Jayasuryan, N.5
  • 25
    • 70350462731 scopus 로고    scopus 로고
    • Genetic and functional characterization of HIV-1 VprC variants from North India: Presence of unique recombinants with mosaic genomes from B, C and D subtypes within the ORF of Vpr
    • Bano AS, Sood V, Neogi U, Goel N, Kuttiat VS, et al. (2009) Genetic and functional characterization of HIV-1 VprC variants from North India: Presence of unique recombinants with mosaic genomes from B, C and D subtypes within the ORF of Vpr. J Gen Virol 90: 2768-2776.
    • (2009) J Gen Virol , vol.90 , pp. 2768-2776
    • Bano, A.S.1    Sood, V.2    Neogi, U.3    Goel, N.4    Kuttiat, V.S.5
  • 26
    • 39549120650 scopus 로고    scopus 로고
    • Evidence of a novel B/C recombinant exhibiting unique breakpoints of near full-length HIV type 1 genome from Northeastern India
    • Lakhashe S, Tripathy S, Paranjape R, Bhattacharya J, (2008) Evidence of a novel B/C recombinant exhibiting unique breakpoints of near full-length HIV type 1 genome from Northeastern India. AIDS Res Hum Retroviruses 24: 229-234.
    • (2008) AIDS Res Hum Retroviruses , vol.24 , pp. 229-234
    • Lakhashe, S.1    Tripathy, S.2    Paranjape, R.3    Bhattacharya, J.4
  • 27
    • 77958170997 scopus 로고    scopus 로고
    • Naturally occurring polymorphisms and primary drug resistance profile among antiretroviral-naïve individuals in Bangalore, India
    • Neogi U, Prarthana BS, Gupta S, D'souza G, De Costa A, et al. (2010) Naturally occurring polymorphisms and primary drug resistance profile among antiretroviral-naïve individuals in Bangalore, India. AIDS Res Hum Retroviruses 26: 1097-1101.
    • (2010) AIDS Res Hum Retroviruses , vol.26 , pp. 1097-1101
    • Neogi, U.1    Prarthana, B.S.2    Gupta, S.3    D'souza, G.4    de Costa, A.5
  • 28
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, et al. (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739.
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5
  • 30
    • 45849154165 scopus 로고    scopus 로고
    • jModelTest: phylogenetic model averaging
    • Posada D, (2008) jModelTest: phylogenetic model averaging. Mol Biol Evol 25: 1253-1256.
    • (2008) Mol Biol Evol , vol.25 , pp. 1253-1256
    • Posada, D.1


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