-
2
-
-
0028874048
-
Rapid turnover of plasma virions and CD4 lymphocytes in HIV-1 infection
-
Ho DD, Neumann AU, Perelson AS, Chen W, Leonard JM, Markowitz M. Rapid turnover of plasma virions and CD4 lymphocytes in HIV-1 infection. Nature 1995, 373:123-126.
-
(1995)
Nature
, vol.373
, pp. 123-126
-
-
Ho, D.D.1
Neumann, A.U.2
Perelson, A.S.3
Chen, W.4
Leonard, J.M.5
Markowitz, M.6
-
3
-
-
0028811974
-
Viral dynamics in human immunodeficiency virus type 1 infection
-
Wei X, Ghosh SK, Taylor ME, Johnson VA, Emini EA, Deutsch P, et al. Viral dynamics in human immunodeficiency virus type 1 infection. Nature 1995, 373:117-122.
-
(1995)
Nature
, vol.373
, pp. 117-122
-
-
Wei, X.1
Ghosh, S.K.2
Taylor, M.E.3
Johnson, V.A.4
Emini, E.A.5
Deutsch, P.6
-
5
-
-
0037189323
-
Diversity considerations in HIV-1 vaccine selection
-
Gaschen B, Taylor J, Yusim K, Foley B, Gao F, Lang D, et al. Diversity considerations in HIV-1 vaccine selection. Science 2002, 296:2354-2360.
-
(2002)
Science
, vol.296
, pp. 2354-2360
-
-
Gaschen, B.1
Taylor, J.2
Yusim, K.3
Foley, B.4
Gao, F.5
Lang, D.6
-
6
-
-
0036094391
-
Human immunodeficiency virus type 1 subtype C molecular phylogeny: Consensus sequence for an AIDS vaccine design?
-
Novitsky V, Smith UR, Gilbert P, McLane MF, Chigwedere P, Williamson C, et al. Human immunodeficiency virus type 1 subtype C molecular phylogeny: consensus sequence for an AIDS vaccine design? J Virol 2002, 76:5435-5451.
-
(2002)
J Virol
, vol.76
, pp. 5435-5451
-
-
Novitsky, V.1
Smith, U.R.2
Gilbert, P.3
McLane, M.F.4
Chigwedere, P.5
Williamson, C.6
-
7
-
-
0035162494
-
Evolutionary and immunological implications of contemporary HIV-1 variation
-
Korber B, Gaschen B, Yusim K, Thakallapally R, Kesmir C, Detours V. Evolutionary and immunological implications of contemporary HIV-1 variation. Br Med Bull 2001, 58:19-42.
-
(2001)
Br Med Bull
, vol.58
, pp. 19-42
-
-
Korber, B.1
Gaschen, B.2
Yusim, K.3
Thakallapally, R.4
Kesmir, C.5
Detours, V.6
-
8
-
-
0035282512
-
Clinical use of genotypic and phenotypic drug resistance testing to monitor antiretroviral chemotherapy
-
Hanna GJ, D'Aquila RT. Clinical use of genotypic and phenotypic drug resistance testing to monitor antiretroviral chemotherapy. Clin Infect Dis 2001, 32:774-782.
-
(2001)
Clin Infect Dis
, vol.32
, pp. 774-782
-
-
Hanna, G.J.1
D'Aquila, R.T.2
-
9
-
-
0343183245
-
Antiretroviral drug resistance testing in adult HIV-1 infection: Recommendations of an International AIDS Society-USA Panel
-
Hirsch MS, Brun-Vezinet F, D'Aquila RT, Hammer SM, Johnson VA, Kuritzkes DR, et al. Antiretroviral drug resistance testing in adult HIV-1 infection: recommendations of an International AIDS Society-USA Panel. JAMA 2000, 283:2417-2426.
-
(2000)
JAMA
, vol.283
, pp. 2417-2426
-
-
Hirsch, M.S.1
Brun-Vezinet, F.2
D'Aquila, R.T.3
Hammer, S.M.4
Johnson, V.A.5
Kuritzkes, D.R.6
-
10
-
-
0029130259
-
Sequence distances between env genes of HIV-1 from individuals infected from the same source: Implications for the investigation of possible transmission events
-
Arnold C, Balfe P, Clewley JP. Sequence distances between env genes of HIV-1 from individuals infected from the same source: implications for the investigation of possible transmission events. Virology 1995, 211:198-203.
-
(1995)
Virology
, vol.211
, pp. 198-203
-
-
Arnold, C.1
Balfe, P.2
Clewley, J.P.3
-
11
-
-
0034926355
-
Phylogenetic analysis of multiple heterosexual transmission events involving subtype b of HIV type 1
-
Hayman A, Moss T, Simmons G, Arnold C, Holmes EC, Naylor-Adamson L, et al. Phylogenetic analysis of multiple heterosexual transmission events involving subtype b of HIV type 1. AIDS Res Hum Retroviruses 2001, 17:689-695.
-
(2001)
AIDS Res Hum Retroviruses
, vol.17
, pp. 689-695
-
-
Hayman, A.1
Moss, T.2
Simmons, G.3
Arnold, C.4
Holmes, E.C.5
Naylor-Adamson, L.6
-
12
-
-
0038182982
-
Identification of a transmission chain of HIV type 1 containing drug resistance-associated mutations
-
Taylor S, Cane P, Hue S, Xu L, Wrin T, Lie Y, et al. Identification of a transmission chain of HIV type 1 containing drug resistance-associated mutations. AIDS Res Hum Retroviruses 2003, 19:353-361.
-
(2003)
AIDS Res Hum Retroviruses
, vol.19
, pp. 353-361
-
-
Taylor, S.1
Cane, P.2
Hue, S.3
Xu, L.4
Wrin, T.5
Lie, Y.6
-
13
-
-
0029744336
-
Accurate reconstruction of a known HIV-1 transmission history by phylogenetic tree analysis
-
Leitner T, Escanilla D, Franzen C, Uhlen M, Albert J. Accurate reconstruction of a known HIV-1 transmission history by phylogenetic tree analysis. Proc Natl Acad Sci USA 1996, 93: 10864-10869.
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 10864-10869
-
-
Leitner, T.1
Escanilla, D.2
Franzen, C.3
Uhlen, M.4
Albert, J.5
-
14
-
-
0026777199
-
Molecular epidemiology of HIV transmission in a dental practice
-
Ou CY, Ciesielski CA, Myers G, Bandea CI, Luo CC, Korber BT, et al. Molecular epidemiology of HIV transmission in a dental practice. Science 1992, 256:1165-1171.
-
(1992)
Science
, vol.256
, pp. 1165-1171
-
-
Ou, C.Y.1
Ciesielski, C.A.2
Myers, G.3
Bandea, C.I.4
Luo, C.C.5
Korber, B.T.6
-
15
-
-
0028031329
-
Analysis of a rape case by direct sequencing of the human immunodeficiency virus type 1 pol and gag genes
-
Albert J, Wahlberg J, Leitner T, Escanilla D, Uhlen M. Analysis of a rape case by direct sequencing of the human immunodeficiency virus type 1 pol and gag genes. J Virol 1994, 68:5918-5924.
-
(1994)
J Virol
, vol.68
, pp. 5918-5924
-
-
Albert, J.1
Wahlberg, J.2
Leitner, T.3
Escanilla, D.4
Uhlen, M.5
-
16
-
-
0034827865
-
Molecular investigation of transmission of human immunodeficiency virus type 1 in a criminal case
-
Machuca R, Jorgensen LB, Theilade P, Nielsen C. Molecular investigation of transmission of human immunodeficiency virus type 1 in a criminal case. Clin Diagn Lab Immunol 2001, 8: 884-890.
-
(2001)
Clin Diagn Lab Immunol
, vol.8
, pp. 884-890
-
-
Machuca, R.1
Jorgensen, L.B.2
Theilade, P.3
Nielsen, C.4
-
17
-
-
0036841148
-
Reverse transcriptase and protease sequence evolution in two HIV-1-infected couples
-
Palmer S, Vuitton D, Gonzales MJ, Bassignot A, Shafer RW. Reverse transcriptase and protease sequence evolution in two HIV-1-infected couples. J Acquir Immune Defic Syndr 2002, 31:285-290.
-
(2002)
J Acquir Immune Defic Syndr
, vol.31
, pp. 285-290
-
-
Palmer, S.1
Vuitton, D.2
Gonzales, M.J.3
Bassignot, A.4
Shafer, R.W.5
-
18
-
-
0027125210
-
The continuing case of the Florida dentist
-
Smith TF, Waterman MS. The continuing case of the Florida dentist. Science 1992, 256:1155-1156.
-
(1992)
Science
, vol.256
, pp. 1155-1156
-
-
Smith, T.F.1
Waterman, M.S.2
-
19
-
-
0027474918
-
Dental HIV transmission?
-
DeBry RW, Abele LG, Weiss SH, Hill MD, Bouzas M, Lorenzo E, et al. Dental HIV transmission? Nature 1993, 361:691.
-
(1993)
Nature
, vol.361
, pp. 691
-
-
DeBry, R.W.1
Abele, L.G.2
Weiss, S.H.3
Hill, M.D.4
Bouzas, M.5
Lorenzo, E.6
-
20
-
-
0035003858
-
HIV-1 subtyping using phylogenetic analysis of pol gene sequences
-
Pasquier C, Millot N, Njouom R, Sandres K, Cazabat M, Puel J, et al. HIV-1 subtyping using phylogenetic analysis of pol gene sequences. J Virol Methods 2001, 94:45-54.
-
(2001)
J Virol Methods
, vol.94
, pp. 45-54
-
-
Pasquier, C.1
Millot, N.2
Njouom, R.3
Sandres, K.4
Cazabat, M.5
Puel, J.6
-
21
-
-
0034821819
-
Determination of human immunodeficiency virus type 1 subtypes by a rapid method useful for the routine diagnostic laboratory
-
Kessler HH, Deuretzbacher D, Stelzl E, Daghofer E, Santner BI, Marth E. Determination of human immunodeficiency virus type 1 subtypes by a rapid method useful for the routine diagnostic laboratory. Clin Diagn Lab Immunol 2001, 8:1018-1020.
-
(2001)
Clin Diagn Lab Immunol
, vol.8
, pp. 1018-1020
-
-
Kessler, H.H.1
Deuretzbacher, D.2
Stelzl, E.3
Daghofer, E.4
Santner, B.I.5
Marth, E.6
-
22
-
-
0035341915
-
Use of drug resistance sequence data for the systematic detection of non-B human immunodeficiency virus type 1 (HIV-1) subtypes: How to create a sentinel site for monitoring the genetic diversity of HIV-1 at a country scale
-
Yahi N, Fantini J, Tourres C, Tivoli N, Koch N, Tamalet C. Use of drug resistance sequence data for the systematic detection of non-B human immunodeficiency virus type 1 (HIV-1) subtypes: how to create a sentinel site for monitoring the genetic diversity of HIV-1 at a country scale. J Infect Dis 2001, 183: 1311-1317.
-
(2001)
J Infect Dis
, vol.183
, pp. 1311-1317
-
-
Yahi, N.1
Fantini, J.2
Tourres, C.3
Tivoli, N.4
Koch, N.5
Tamalet, C.6
-
23
-
-
0025267792
-
The general stochastic model of nucleotide substitution
-
Rodriguez F, Oliver JL, Marin A, Medina JR. The general stochastic model of nucleotide substitution. J Theor Biol 1990, 142:485-501.
-
(1990)
J Theor Biol
, vol.142
, pp. 485-501
-
-
Rodriguez, F.1
Oliver, J.L.2
Marin, A.3
Medina, J.R.4
-
24
-
-
0031773680
-
MODELTEST: Testing the model of DNA substitution
-
Posada D, Crandall KA. MODELTEST: testing the model of DNA substitution. Bioinformatics 1998, 14:817-818.
-
(1998)
Bioinformatics
, vol.14
, pp. 817-818
-
-
Posada, D.1
Crandall, K.A.2
-
26
-
-
0031574072
-
The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 1997, 25:4876-4882.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
27
-
-
0002051540
-
BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
-
Hall TA. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Series 2000, 41:95-98.
-
(2000)
Nucleic Acids Symp Series
, vol.41
, pp. 95-98
-
-
Hall, T.A.1
-
28
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987, 4:406-425.
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
29
-
-
0015808083
-
Maximum-likelihood estimation of evolutionary trees from continuous characters
-
Felsenstein J. Maximum-likelihood estimation of evolutionary trees from continuous characters. Am J Hum Genet 1973, 25:471-492.
-
(1973)
Am J Hum Genet
, vol.25
, pp. 471-492
-
-
Felsenstein, J.1
-
30
-
-
0022376704
-
Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
-
Hasegawa M, Kishino H, Yano T. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J Mol Evol 1985, 22:160-174.
-
(1985)
J Mol Evol
, vol.22
, pp. 160-174
-
-
Hasegawa, M.1
Kishino, H.2
Yano, T.3
-
31
-
-
0019296687
-
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
-
Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 1980, 16:111-120.
-
(1980)
J Mol Evol
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
32
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985, 39:783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
33
-
-
0003322977
-
A guide to HIV-1 reverse transcriptase and protease sequencing for drug resistance studies
-
Edited by Sodroski J. Los Alamos: Los Alamos National Laboratory
-
Shafer RW, Dupnik K, Winters MA, Eschleman SH. A guide to HIV-1 reverse transcriptase and protease sequencing for drug resistance studies. In: HIV Sequence Compendium. Edited by Sodroski J. Los Alamos: Los Alamos National Laboratory; 2000.
-
(2000)
HIV Sequence Compendium
-
-
Shafer, R.W.1
Dupnik, K.2
Winters, M.A.3
Eschleman, S.H.4
-
34
-
-
0041699711
-
Drug resistance mutations in HIV-1
-
D'Aquila RT, Schapiro JM, Brun-Vezinet F, Clotet B, Conway B, Demeter LM, et al. Drug resistance mutations in HIV-1. Top HIV Med 2003, 11:92-96.
-
(2003)
Top HIV Med
, vol.11
, pp. 92-96
-
-
D'Aquila, R.T.1
Schapiro, J.M.2
Brun-Vezinet, F.3
Clotet, B.4
Conway, B.5
Demeter, L.M.6
-
35
-
-
0034625771
-
Timing the ancestor of the HIV-1 pandemic strains
-
Korber B, Muldoon M, Theiler J, Gao F, Gupta R, Lapedes A, et al. Timing the ancestor of the HIV-1 pandemic strains. Science 2000, 288:1789-1796.
-
(2000)
Science
, vol.288
, pp. 1789-1796
-
-
Korber, B.1
Muldoon, M.2
Theiler, J.3
Gao, F.4
Gupta, R.5
Lapedes, A.6
-
36
-
-
0023740248
-
Rates and dates of divergence between AIDS virus nucleotide sequences
-
Li WH, Tanimura M, Sharp PM. Rates and dates of divergence between AIDS virus nucleotide sequences. Mol Biol Evol 1988, 5:313-330.
-
(1988)
Mol Biol Evol
, vol.5
, pp. 313-330
-
-
Li, W.H.1
Tanimura, M.2
Sharp, P.M.3
-
37
-
-
0033940444
-
Incidence and impact of resistance against approved antiretroviral drugs
-
Pillay D, Taylor S, Richman DD. Incidence and impact of resistance against approved antiretroviral drugs. Rev Med Virol 2000, 10:231-253.
-
(2000)
Rev Med Virol
, vol.10
, pp. 231-253
-
-
Pillay, D.1
Taylor, S.2
Richman, D.D.3
-
38
-
-
0037320994
-
Rates of transmission of antiretroviral drug resistant strains of HIV-1
-
Ammaranond P, Cunningham P, Oelrichs R, Suzuki K, Harris C, Leas L, et al. Rates of transmission of antiretroviral drug resistant strains of HIV-1. J Clin Virol 2003, 26:153-161.
-
(2003)
J Clin Virol
, vol.26
, pp. 153-161
-
-
Ammaranond, P.1
Cunningham, P.2
Oelrichs, R.3
Suzuki, K.4
Harris, C.5
Leas, L.6
|