Tracing the origin and history of the HIV-2 epidemic

Proceedings of the National Academy of Sciences of the United States of America

Volumn 100, Issue 11, 2003, Pages 6588-6592

  Lemey, Philippe ^a   Pybus, Oliver G ^b   Bin, Wang ^c   Saksena, Nitin K ^c   Salemi, Marco ^a   Vandamme, Anne Mieke ^a  

^a REGA INSTITUTE FOR MEDICAL RESEARCH   (Belgium)

^b UNIVERSITY OF OXFORD   (United Kingdom)

^c UNIVERSITY OF SYDNEY   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

GAG PROTEIN; POL PROTEIN;

AMINO ACID SUBSTITUTION; ARTICLE; ENVELOPE GENE; EPIDEMIC; EPIDEMIOLOGICAL DATA; GENE SEQUENCE; GENEALOGY; GUINEA-BISSAU; HUMAN IMMUNODEFICIENCY VIRUS 2; MAXIMUM LIKELIHOOD METHOD; MOLECULAR CLOCK; MOLECULAR EVOLUTION; NONHUMAN; POPULATION GENETICS; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; STRAIN DIFFERENCE; VIRUS STRAIN;

HIV INFECTIONS; HIV-2; HUMANS;

HUMAN IMMUNODEFICIENCY VIRUS; HUMAN IMMUNODEFICIENCY VIRUS 2; RNA VIRUSES; SIMIAE;

EID: 0038312916     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0936469100     Document Type: Article

References (35)

1. Hahn, B. H., Shaw, G. M., De Cock, K. M. & Sharp, P. M. (2000) Science 287, 607-614.
2. Sharp, P. M., Robertson, D. L. & Hahn, B. H. (1995) Philos. Trans. R. Soc. London B 349, 41-47.
3. Sharp, P. M., Bailes, E., Robertson, D. L., Gao, F. & Hahn, B. H. (1999) Biol. Bull. (Woods Hole, Mass.) 196, 338-342.
4. Chen, Z., Luckay, A., Sodora, D. L., Telfer, P., Reed, P., Gettie, A., Kanu, J. M., Sadek, R. F., Yee, J., Ho, D. D., et al. (1997) J. Virol. 71, 3953-3960.
5. Gao, F., Yue, L., Robertson, D. L., Hill, S. C., Hui, H., Biggar, R. J., Neequaye, A. E., Whelan, T. M., Ho, D. D., Shaw, G. M., et al. (1994) J. Virol. 68, 7433-7447.
6. Marx, P. A., Alcabes, P. G. & Drucker, E. (2000) Philos. Trans. R. Soc. London B 356, 911-920.
7. Yamaguchi, J., Devare, S. G. & Brennan, C. A. (2000) AIDS Res. Hum. Retroviruses 16, 925-930.
8. Popper, S. J., Sarr, A. D., Travers, K. U., Gueye-Ndiaye, A., Mboup, S., Essex, M. E. & Kanki, P. J. (1999) J. Infect. Dis. 180, 1116-1121.
9. Shanmugam, V., Switzer, W. M., Nkengasong, J. N., Garcia-Lerma, G., Green, T. A., Ekpini, E., Sassan-Morokro, M., Antunes, F., Manshino, K., Soriano, V., et al. (2000) J. Acquired Immune Defic. Syndr. 24, 257-263.
10. De Cock, K. M., Adjorlolo, G., Ekpini, E., Sibailly, T., Kouadio, J., Maran, M., Brattegaard, K., Vetter, K. M., Doorly, R. & Gayle, H. D. (1993) J. Am. Med. Assoc. 270, 2083-2086.
11. Yusim, K., Peeters, M., Pybus, O. G., Bhattacharya, T., Delaporte, E., Mulanga, C., Muldoon, M., Theiler, J. & Korber, B. (2001) Philos. Trans. R. Soc. London B 356, 855-866.
12. Korber, B., Muldoon, M., Theiler, J., Gao, F., Gupta, R., Lapedes, A., Hahn, B. H., Wolinsky, S. & Battacharya, T. (2000) Science 288, 1789-1796.
13. Salemi, M., Strimmer, K., Hall, W. W., Duffy, M., Delaporte, E., Mboup, S., Peeters, M. & Vandamme, A. M. (2001) FASEB J. 15, 276-278.
14. Sharp, P. M., Bailes, E., Chaudhuri, R. R., Rodenburg, C. M., Santiago, M. O. & Hahn, B. H. (2001) Philos. Trans. R. Soc. London B 356, 867-876.
15. Farris, J. S., Källersjö, M., Kluge, A. G. & Bult, C. (1995) Cladistics 10, 315-319.
16. Cunningham, C. W. (1997) Mol. Biol. Evol. 14, 733-740.
17. Sullivan, J. (1996) Syst. Biol. 45, 375-380.
18. Posada, D. & Crandall, K. A. (1998) Bioinformatics 14, 817-818.
19. Rambaut, A. (2000) Bioinformatics 16, 395-399.
20. Yang, Z. (1997) Comput. Appl. Biosci. 13, 555-556.
21. Yang, Z. (1996) J. Mol. Evol. 42, 587-596.
22. Yang, Z., Nielsen, R., Goldman, N. & Pedersen, A. M. (2000) Genetics 155, 431-449.
23. Pybus, O. G., Rambaut, A. & Harvey, P. H. (2000) Genetics 155, 1429-1437.
24. Strimmer, K. & Pybus, O. G. (2001) Mol. Biol. Evol. 18, 2298-2305.
25. Jenkins, G. M., Rambaut, A., Pybus, O. G. & Holmes, E. C. (2002) J. Mol. Evol. 54, 156-165.
26. Wilkins, A., Ricard, D., Todd, J., Whittle, H., Dias, F. & Paulo Da Silva, A. (1993) AIDS 7, 1119-1122.
27. Poulsen, A. G., Aaby, P., Jensen, H. & Dias, F. (2000) Scand. J. Infect. Dis. 32, 169-175.
28. Grassly, N. C., Xiang, Z., Ariyoshi, K., Aaby, P., Jensen, H., van der Loeff, M. S., Dias, F., Whittle, H. & Breuer, J. (1998) J. Virol. 72, 7895-7899.
29. Hooper, E. (1999) The River (Little, Brown, Boston), pp. 623-643.
30. Schierup, M. H. & Hein, J. (2000) Mol. Biol. Evol. 17, 1578-1579.
31. Schierup, M. H. & Hein, J. (2000) Genetics 156, 879-891.
32. Piedade, J., Venenno, T., Prieto, E., Albuquerque, R., Esteves, A., Parreira, R. & Canas-Ferreira, W. F. (2000) Acta Trop. 76, 119-124.
33. Mota-Miranda, A., Gomes, H., Marques, R., Serrao, R., Lourenco, H., Santos-Ferreira, O. & Lecour, H. (1995) J. Infect. 31, 163-164.
34. Venter, A. J. (1973) Portugal's Guerilla War: The Campaign for Africa (John Malherbe, Cape Town, South Africa).
35. Pybus, O. G., Charleston, M. A., Gupta, S., Rambaut, A., Holmes, E. C. & Harvey, P. H. (2001) Science 292, 2323-2325.