-
1
-
-
3042569691
-
Developing an AIDS vaccine: Need, uncertainty, hope
-
DOI 10.1126/science.1100368
-
Emini EA and Koff WC: AIDS/HIV. Developing an AIDS vaccine: Need, uncertainty, hope. Science 2004;304:1913-1914. (Pubitemid 38822172)
-
(2004)
Science
, vol.304
, Issue.5679
, pp. 1913-1914
-
-
Emini, E.A.1
Koff, W.C.2
-
2
-
-
0032546844
-
The HIV-1 envelope glycoproteins: Fusogens, antigens, and immunogens
-
DOI 10.1126/science.280.5371.1884
-
Wyatt R and Sodroski J: The HIV-1 envelope glycoproteins: Fusogens, antigens, and immunogens. Science 1998;280: 1884-1888. (Pubitemid 28299385)
-
(1998)
Science
, vol.280
, Issue.5371
, pp. 1884-1888
-
-
Wyatt, R.1
Sodroski, J.2
-
3
-
-
0042376485
-
A new classification for HIV-1
-
Berger EA, Doms RW, Fenyo EM, et al.: A new classification for HIV-1. Nature 1998;391:240-240.
-
(1998)
Nature
, vol.391
, pp. 240-240
-
-
Berger, E.A.1
Doms, R.W.2
Fenyo, E.M.3
-
4
-
-
0033012398
-
Chemokine receptors as HIV-1 coreceptors: Roles in viral entry, tropism, and disease
-
DOI 10.1146/annurev.immunol.17.1.657
-
Berger EA, Murphy PM, and Farber JM: Chemokine receptors as HIV-1 coreceptors: Roles in viral entry, tropism, and disease. Annu Rev Immunol 1999;17:657-700. (Pubitemid 29241137)
-
(1999)
Annual Review of Immunology
, vol.17
, pp. 657-700
-
-
Berger, E.A.1
Murphy, P.M.2
Farber, J.M.3
-
5
-
-
0000675937
-
Coreceptor use by primate lentiviruses
-
(Kuiken CL et al., eds.). Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM
-
Broder CC and Jones-Trower A: Coreceptor use by primate lentiviruses. In: Human Retroviruses and AIDS 1999 (Kuiken CL et al., eds.). Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM, 1999, pp. 517-541.
-
(1999)
Human Retroviruses and AIDS
, vol.1999
, pp. 517-541
-
-
Broder, C.C.1
Jones-Trower, A.2
-
6
-
-
0004040205
-
-
Vol LA-UR 10-03684. Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM, 2011
-
Kuiken C, et al., eds.: HIV Sequence Compendium 2011, Vol LA-UR 10-03684. Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM, 2011.
-
(2011)
HIV Sequence Compendium
-
-
Kuiken, C.1
-
7
-
-
27744597054
-
Structural biology: Structure of a V3-containing HIV-1 gp120 core
-
DOI 10.1126/science.1118398
-
Huang CC, Tang M, Zhang MY, et al.: Structure of a V3- containing HIV-1 gp120 core. Science 2005;310:1025-1028. (Pubitemid 41611916)
-
(2005)
Science
, vol.310
, Issue.5750
, pp. 1025-1028
-
-
Huang, C.-C.1
Tang, M.2
Zhang, M.-Y.3
Majeed, S.4
Montabana, E.5
Stanfield, R.L.6
Dimitrov, D.S.7
Korber, B.8
Sodroski, J.9
Wilson, I.A.10
Wyatt, R.11
Kwong, P.D.12
-
8
-
-
34848868199
-
Structures of the CCR5 N terminus and of a tyrosine-sulfated antibody with HIV-1 gp120 and CD4
-
DOI 10.1126/science.1145373
-
Huang CC, Lam SN, Acharya P, et al.: Structures of the CCR5 N terminus and of a tyrosine-sulfated antibody with HIV-1 gp120 and CD4. Science 2007;317:1930-1934. (Pubitemid 47509439)
-
(2007)
Science
, vol.317
, Issue.5846
, pp. 1930-1934
-
-
Huang, C.-C.1
Lam, S.N.2
Acharya, P.3
Tang, M.4
Xiang, S.-H.5
Hussan, S.S.-U.6
Stanfield, R.L.7
Robinson, J.8
Sodroski, J.9
Wilson, I.A.10
Wyatt, R.11
Bewley, C.A.12
Kwong, P.D.13
-
9
-
-
84869784812
-
Insights into the structure, correlated motions, and electrostatic properties of two HIV-1 gp120 v3 loops
-
López De Victoria A, Tamamis P, Kieslich CA, and Morikis D: Insights into the structure, correlated motions, and electrostatic properties of two HIV-1 gp120 V3 loops. PLoS One 2012;7:e49925.
-
(2012)
PLoS One
, vol.7
, pp. 49925
-
-
López De Victoria, A.1
Tamamis, P.2
Kieslich, C.A.3
Morikis, D.4
-
10
-
-
0026606727
-
Phenotypeassociated sequence variation in the third variable domain of the human immunodeficiency virus type 1 gp120 molecule
-
Fouchier RAM, Groenink M, Kootstra NA, et al.: Phenotypeassociated sequence variation in the third variable domain of the human immunodeficiency virus type 1 gp120 molecule. J Virol 1992;66:3183-3187.
-
(1992)
J Virol
, vol.66
, pp. 3183-3187
-
-
Fouchier, R.A.M.1
Groenink, M.2
Kootstra, N.A.3
-
11
-
-
84862187822
-
Clustering of HIV-1 subtypes based on gp120 v3 loop electrostatic properties
-
López De Victoria A, Kieslich CA, Rizos AK, Krambovitis E, and Morikis D: Clustering of HIV-1 subtypes based on gp120 V3 loop electrostatic properties. BMC Biophys 2012;5:3.
-
(2012)
BMC Biophys
, vol.5
, pp. 3
-
-
López De Victoria, A.1
Kieslich, C.A.2
Rizos, A.K.3
Krambovitis, E.4
Morikis, D.5
-
13
-
-
0031575431
-
Change in coreceptor use correlates with disease progression in HIV-1- infected individuals
-
DOI 10.1084/jem.185.4.621
-
Connor RI, Sheridan KE, Ceradini D, Choe S, and Landau NR: Change in coreceptor use correlates with disease progression in HIV-1-infected individuals. J Exp Med 1997;185: 621-628. (Pubitemid 27098147)
-
(1997)
Journal of Experimental Medicine
, vol.185
, Issue.4
, pp. 621-628
-
-
Connor, R.I.1
Sheridan, K.E.2
Ceradini, D.3
Choe, S.4
Landau, N.R.5
-
14
-
-
0033934948
-
Strong association between failure of T cell homeostasis and the syncytium-inducing phenotype among HIV-1-infected men in the Amsterdam Cohort Study
-
DOI 10.1097/00002030-200006160-00012
-
Maas JJJ, Gange SJ, Schuitemaker H, Coutinho RA, van Leeuwen R, and Margolick JB: Strong association between failure of T cell homeostasis and the syncytium-inducing phenotype among HIV-1-infected men in the Amsterdam Cohort Study. AIDS 2000;14:1155-1161. (Pubitemid 30420658)
-
(2000)
AIDS
, vol.14
, Issue.9
, pp. 1155-1161
-
-
Maas, J.J.J.1
Gange, S.J.2
Schuitemaker, H.3
Coutinho, R.A.4
Van Leeuwen, R.5
Margolick, J.B.6
-
15
-
-
0030670330
-
In vivo evolution of HIV-1 co-receptor usage and sensitivity to chemokine-mediated suppression
-
Scarlatti G, Tresoldi E, Bjorndal A, et al.: In vivo evolution of HIV-1 co-receptor usage and sensitivity to chemokine-mediated suppression. Nature Med 1997;3:1259-1265. (Pubitemid 27508828)
-
(1997)
Nature Medicine
, vol.3
, Issue.11
, pp. 1259-1265
-
-
Scarlatti, G.1
Tresoldi, E.2
Bjorndal, A.3
Fredriksson, R.4
Colognesi, C.5
Hong Kui Deng6
Malnati, M.S.7
Plebani, A.8
Siccardi, A.G.9
Littman, D.R.10
Fenyo, E.M.11
Lusso, P.12
-
16
-
-
0003123251
-
Hiv-1 coreceptor use: A molecular window into viral tropism. In
-
(Korber B et al., eds.). Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM
-
Doms RW and Moore JP: HIV-1 Coreceptor use: A molecular window into viral tropism. In: HIV Molecular Immunology Database 1997, Vol. IV (Korber B et al., eds.). Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM, 1997, pp. IV-25-36.
-
(1997)
HIV Molecular Immunology Database 1997
, vol.4
, pp. 25-36
-
-
Doms, R.W.1
Moore, J.P.2
-
17
-
-
84885135950
-
Biological and molecular aspects of HIV-1 coreceptor usage
-
(Kuiken C et al., eds.). Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM
-
Koning F, van Rij R, and Schuitemaker H: Biological and molecular aspects of HIV-1 coreceptor usage. In: HIV Sequence Compendium 2002 (Kuiken C et al., eds.). Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM, 2002, pp. 24-42.
-
HIV Sequence Compendium 2002
, pp. 24-42
-
-
Koning, F.1
Van Rij, R.2
Schuitemaker, H.3
-
18
-
-
44949174065
-
Predicting disease outcomes in the clinic
-
Lengauer T, Sander O, Sierra S, Thielen A, and Kaiser R: Predicting disease outcomes in the clinic. Nature Biotechnol 2008;26:612-613.
-
(2008)
Nature Biotechnol
, vol.26
, pp. 612-613
-
-
Lengauer, T.1
Sander, O.2
Sierra, S.3
Thielen, A.4
Kaiser, R.5
-
19
-
-
10744231634
-
Improved Coreceptor Usage Prediction and Genotypic Monitoring of R5-to-X4 Transition by Motif Analysis of Human Immunodeficiency Virus Type 1 env V3 Loop Sequences
-
DOI 10.1128/JVI.77.24.13376-13388.2003
-
Jensen MA, Li FS, van't Wout AB, et al.: Improved coreceptor usage prediction and genotypic monitoring of R5-to- X4 transition by motif analysis of human immunodeficiency virus type 1 env V3 loop sequences. J Virol 2003;77:13376- 13388. (Pubitemid 37494331)
-
(2003)
Journal of Virology
, vol.77
, Issue.24
, pp. 13376-13388
-
-
Jensen, M.A.1
Li, F.-S.2
Van 't Wout, A.B.3
Nickle, D.C.4
Shriner, D.5
He, H.-X.6
McLaughlin, S.7
Shankarappa, R.8
Margolick, J.B.9
Mullins, J.I.10
-
20
-
-
79251483142
-
Clinical significance of HIV-1 coreceptor usage
-
Schuitemaker H, van't Wout AB, and Lusso P: Clinical significance of HIV-1 coreceptor usage. J Transl Med 2011; 9(Suppl 1):S5.
-
(2011)
J Transl Med
, vol.9
, Issue.SUPPL. 1
, pp. 5
-
-
Schuitemaker, H.1
Van't Wout, A.B.2
Lusso, P.3
-
21
-
-
84870666711
-
Reconstructing the dynamics of hiv evolution within hosts from serial deep sequence data
-
Poon AFY, Swenson LC, Bunnik EM, et al.: Reconstructing the dynamics of HIV evolution within hosts from serial deep sequence data. PLoS Comput Biol 2012;8:e1002753.
-
(2012)
PLoS Comput Biol
, vol.8
, pp. 1002753
-
-
Poon, A.F.Y.1
Swenson, L.C.2
Bunnik, E.M.3
-
22
-
-
0035918220
-
N-linked glycosylation of the hiv type-1 gp120 envelope glycoprotein as a major determinant of ccr5 and cxcr4 coreceptor utilization
-
The abbreviations of the amino acids of the glycosylation motif are N for asparagine (the glycosylation site), T for threonine, S for serine, and X for any amino acids except for proline
-
Pollakis G, Kang S, Kliphuis A, Chalaby MI, Goudsmit J, and Paxton WA: N-linked glycosylation of the HIV type-1 gp120 envelope glycoprotein as a major determinant of CCR5 and CXCR4 coreceptor utilization. J Biol Chem 2001;276:13433-13441. The abbreviations of the amino acids of the glycosylation motif are N for asparagine (the glycosylation site), T for threonine, S for serine, and X for any amino acids except for proline.
-
(2001)
J Biol Chem
, vol.276
, pp. 13433-13441
-
-
Pollakis, G.1
Kang, S.2
Kliphuis, A.3
Chalaby, M.I.4
Goudsmit, J.5
Paxton, W.A.6
-
23
-
-
34247214426
-
Structural basis for coreceptor selectivity by the HIV type 1 V3 loop
-
DOI 10.1089/aid.2006.0130
-
Cardozo T, Kimura T, Philpott S, Weiser B, Burger H, and Zolla-Pazner S: Structural basis for coreceptor selectivity by the HIV type 1 V3 loop. AIDS Res Hum Retroviruses 2007;23:415-426. (Pubitemid 46608562)
-
(2007)
AIDS Research and Human Retroviruses
, vol.23
, Issue.3
, pp. 415-426
-
-
Cardozo, T.1
Kimura, T.2
Philpott, S.3
Weiser, B.4
Burger, H.5
Zolla-Pazner, S.6
-
24
-
-
84886606682
-
-
http://hiv.lanl.gov/
-
-
-
-
25
-
-
84886633913
-
-
http://aids.gov/HIV-aids-basics/
-
-
-
-
26
-
-
84886616395
-
-
http://geno2pheno.org/
-
-
-
-
27
-
-
84886634320
-
-
http://indra.mullins.microbiol.washington.edu/webpssm/.
-
-
-
-
28
-
-
0345505217
-
A new perspective on V3 phenotype prediction
-
DOI 10.1089/088922203762688658
-
Pillai S, Good B, Richman D, and Corbeil J: A new perspective on V3 phenotype prediction. AIDS Res Hum Retroviruses 2003;19:145-149. (Pubitemid 36308052)
-
(2003)
AIDS Research and Human Retroviruses
, vol.19
, Issue.2
, pp. 145-149
-
-
Pillai, S.1
Good, B.2
Richman, D.3
Corbeil, J.4
-
29
-
-
34548261959
-
Current v3 genotyping algorithms are inadequate for predicting x4 co-receptor usage in clinical isolates
-
Low AJ, Dong W, Chan D, et al.: Current V3 genotyping algorithms are inadequate for predicting X4 co-receptor usage in clinical isolates. AIDS 2007;21:F19-F26.
-
(2007)
AIDS
, vol.21
-
-
Low, A.J.1
Dong, W.2
Chan, D.3
-
30
-
-
33646444564
-
A reliable phenotype predictor for human immunodeficiency virus type 1 subtype c based on envelope v3 sequences
-
JensenMA, CoetzerM, van 'tWout AB,Morris L, andMullins JI: A reliable phenotype predictor for human immunodeficiency virus type 1 subtype C based on envelope V3 sequences. J Virol 2006;80:4698-4704.
-
(2006)
J Virol
, vol.80
, pp. 4698-4704
-
-
Jensen, M.A.1
Coetzer, M.2
Van 'tWout, A.B.3
Morris, L.4
Mullins, J.I.5
-
31
-
-
12144291059
-
Clinical and immunological impact of HIV envelope V3 sequence variation after starting initial triple antiretroviral therapy
-
DOI 10.1097/00002030-200403050-00001
-
Brumme ZL, Dong WWY, Yip B, et al.: Clinical and immunologicalimpact of HIV envelope V3 sequence variation after starting initial triple antiretroviral therapy. AIDS 2004;18:F1-F9. (Pubitemid 38393456)
-
(2004)
AIDS
, vol.18
, Issue.4
-
-
Brumme, Z.L.1
Dong, W.W.Y.2
Yip, B.3
Wynhoven, B.4
Hoffman, N.G.5
Swanstrom, R.6
Jensen, M.A.7
Mullins, J.I.8
Hogg, R.S.9
Montaner, J.S.G.10
Harrigan, P.R.11
-
32
-
-
77957271477
-
Accurate and efficient gp120 v3 loop structure based models for the determination of HIV-1 co-receptor usage
-
Masso M and Vaisman II: Accurate and efficient gp120 V3 loop structure based models for the determination of HIV-1 co-receptor usage. BMC Bioinform 2010;11:494.
-
(2010)
BMC Bioinform
, vol.11
, pp. 494
-
-
Masso, M.1
Vaisman, I.I.2
-
33
-
-
77954992105
-
Auto-mute: Web-based tools for predicting stability changes in proteins due to single amino acid replacements
-
Masso M and Vaisman II: AUTO-MUTE: Web-based tools for predicting stability changes in proteins due to single amino acid replacements. Protein Eng Des Sel 2010;23:683-687.
-
(2010)
Protein Eng Des Sel
, vol.23
, pp. 683-687
-
-
Masso, M.1
Vaisman, I.I.2
-
34
-
-
65449152693
-
Robust supervised and unsupervised statistical learning for hiv type 1 coreceptor usage analysis
-
Prosperi MCF, Fanti I, Ulivi G, Micarelli A, De Luca A, and Zazzi M: Robust supervised and unsupervised statistical learning for HIV type 1 coreceptor usage analysis. AIDS Res Hum Retroviruses 2009;25:305-314.
-
(2009)
AIDS Res Hum Retroviruses
, vol.25
, pp. 305-314
-
-
Prosperi, M.C.F.1
Fanti, I.2
Ulivi, G.3
Micarelli, A.4
De Luca, A.5
Zazzi, M.6
-
35
-
-
34047202703
-
Structural descriptors of gp120 v3 loop for the prediction of HIV-1 coreceptor usage
-
Sander O, Sing T, Sommer I, et al.: Structural descriptors of gp120 V3 loop for the prediction of HIV-1 coreceptor usage. Plos Comput Biol 2007;3:555-564.
-
(2007)
Plos Comput Biol
, vol.3
, pp. 555-564
-
-
Sander, O.1
Sing, T.2
Sommer, I.3
-
36
-
-
36148931769
-
Predicting HIV coreceptor usage on the basis of genetic and clinical covariates
-
Sing T, Low AJ, Beerenwinkel N, et al.: Predicting HIV coreceptor usage on the basis of genetic and clinical covariates. Antivir Ther 2007;12:1097-1106. (Pubitemid 350114990)
-
(2007)
Antiviral Therapy
, vol.12
, Issue.7
, pp. 1097-1106
-
-
Sing, T.1
Low, A.J.2
Beerenwinkel, N.3
Sander, O.4
Cheung, P.K.5
Domingues, F.S.6
Buch, J.7
Daumer, M.8
Kaiser, R.9
Lengauer, T.10
Harrigan, P.R.11
-
37
-
-
35648983524
-
Improved prediction of coreceptor usage phenotype of HIV-1 based on combined features of V3 loop sequence using random forest
-
Xu S, Huang X, Xu H, and Zhang C: Improved prediction of coreceptor usage and phenotype of HIV-1 based on combined features of V3 loop sequence using random forest. J Microbiol 2007;45:441-444.
-
(2007)
J Microbiol
, vol.45
, pp. 441-444
-
-
Xu, S.1
Huang, X.2
Xu, H.3
Zhang, C.4
-
38
-
-
0035884899
-
Improved success of phenotype prediction of the human immunodeficiency virus type 1 from envelope variable loop 3 sequence using neural networks
-
DOI 10.1006/viro.2001.1087
-
Resch W, Hoffman N, and Swanstrom R: Improved success of phenotype prediction of the human immunodeficiency virus type 1 from envelope variable loop 3 sequence using neural networks. Virology 2001;288:51-62. (Pubitemid 32846473)
-
(2001)
Virology
, vol.288
, Issue.1
, pp. 51-62
-
-
Resch, W.1
Hoffman, N.2
Swanstrom, R.3
-
39
-
-
0034523325
-
Envelope V3 amino acid sequence predicts HIV-1 phenotype (co-receptor usage and tropism for macrophages) [1]
-
DOI 10.1097/00002030-200012220-00016
-
Briggs DR, Tuffle DL, Sleasman JW, and Goodenow MM: Envelope V3 amino acid sequence predicts HIV-1 phenotype (co-receptor usage and tropism for macrophages). AIDS 2000;14:2937-2939. (Pubitemid 32042758)
-
(2000)
AIDS
, vol.14
, Issue.18
, pp. 2937-2939
-
-
Briggs, D.R.1
Tuttle, D.L.2
Sleasman, J.W.3
Goodenow, M.M.4
-
40
-
-
84886605647
-
-
http://aidsmeds.com/list.shtml.
-
-
-
-
41
-
-
79952085104
-
Hiv-1 entry, inhibitors, and resistance
-
Lobritz MA, Ratcliff AN, and Arts EJ: HIV-1 entry, inhibitors, and resistance. Viruses-Basel 2010;2:1069-1105.
-
(2010)
Viruses-Basel
, vol.2
, pp. 1069-1105
-
-
Lobritz, M.A.1
Ratcliff, A.N.2
Arts, E.J.3
-
42
-
-
73549092165
-
Entry inhibitors in the treatment of HIV-1 infection
-
Tilton JC and Doms RW: Entry inhibitors in the treatment of HIV-1 infection. Antiviral Res 2010;85:91-100.
-
(2010)
Antiviral Res
, vol.85
, pp. 91-100
-
-
Tilton, J.C.1
Doms, R.W.2
|