메뉴 건너뛰기




Volumn 29, Issue 10, 2013, Pages 1386-1394

A predictive model for HIV type 1 coreceptor selectivity

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; CHEMOKINE RECEPTOR CCR5; CHEMOKINE RECEPTOR CXCR4; GLYCOPROTEIN GP 120;

EID: 84885089234     PISSN: 08892229     EISSN: 19318405     Source Type: Journal    
DOI: 10.1089/aid.2012.0173     Document Type: Article
Times cited : (3)

References (42)
  • 1
    • 3042569691 scopus 로고    scopus 로고
    • Developing an AIDS vaccine: Need, uncertainty, hope
    • DOI 10.1126/science.1100368
    • Emini EA and Koff WC: AIDS/HIV. Developing an AIDS vaccine: Need, uncertainty, hope. Science 2004;304:1913-1914. (Pubitemid 38822172)
    • (2004) Science , vol.304 , Issue.5679 , pp. 1913-1914
    • Emini, E.A.1    Koff, W.C.2
  • 2
    • 0032546844 scopus 로고    scopus 로고
    • The HIV-1 envelope glycoproteins: Fusogens, antigens, and immunogens
    • DOI 10.1126/science.280.5371.1884
    • Wyatt R and Sodroski J: The HIV-1 envelope glycoproteins: Fusogens, antigens, and immunogens. Science 1998;280: 1884-1888. (Pubitemid 28299385)
    • (1998) Science , vol.280 , Issue.5371 , pp. 1884-1888
    • Wyatt, R.1    Sodroski, J.2
  • 3
    • 0042376485 scopus 로고    scopus 로고
    • A new classification for HIV-1
    • Berger EA, Doms RW, Fenyo EM, et al.: A new classification for HIV-1. Nature 1998;391:240-240.
    • (1998) Nature , vol.391 , pp. 240-240
    • Berger, E.A.1    Doms, R.W.2    Fenyo, E.M.3
  • 4
    • 0033012398 scopus 로고    scopus 로고
    • Chemokine receptors as HIV-1 coreceptors: Roles in viral entry, tropism, and disease
    • DOI 10.1146/annurev.immunol.17.1.657
    • Berger EA, Murphy PM, and Farber JM: Chemokine receptors as HIV-1 coreceptors: Roles in viral entry, tropism, and disease. Annu Rev Immunol 1999;17:657-700. (Pubitemid 29241137)
    • (1999) Annual Review of Immunology , vol.17 , pp. 657-700
    • Berger, E.A.1    Murphy, P.M.2    Farber, J.M.3
  • 5
    • 0000675937 scopus 로고    scopus 로고
    • Coreceptor use by primate lentiviruses
    • (Kuiken CL et al., eds.). Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM
    • Broder CC and Jones-Trower A: Coreceptor use by primate lentiviruses. In: Human Retroviruses and AIDS 1999 (Kuiken CL et al., eds.). Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM, 1999, pp. 517-541.
    • (1999) Human Retroviruses and AIDS , vol.1999 , pp. 517-541
    • Broder, C.C.1    Jones-Trower, A.2
  • 6
    • 0004040205 scopus 로고    scopus 로고
    • Vol LA-UR 10-03684. Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM, 2011
    • Kuiken C, et al., eds.: HIV Sequence Compendium 2011, Vol LA-UR 10-03684. Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM, 2011.
    • (2011) HIV Sequence Compendium
    • Kuiken, C.1
  • 9
    • 84869784812 scopus 로고    scopus 로고
    • Insights into the structure, correlated motions, and electrostatic properties of two HIV-1 gp120 v3 loops
    • López De Victoria A, Tamamis P, Kieslich CA, and Morikis D: Insights into the structure, correlated motions, and electrostatic properties of two HIV-1 gp120 V3 loops. PLoS One 2012;7:e49925.
    • (2012) PLoS One , vol.7 , pp. 49925
    • López De Victoria, A.1    Tamamis, P.2    Kieslich, C.A.3    Morikis, D.4
  • 10
    • 0026606727 scopus 로고
    • Phenotypeassociated sequence variation in the third variable domain of the human immunodeficiency virus type 1 gp120 molecule
    • Fouchier RAM, Groenink M, Kootstra NA, et al.: Phenotypeassociated sequence variation in the third variable domain of the human immunodeficiency virus type 1 gp120 molecule. J Virol 1992;66:3183-3187.
    • (1992) J Virol , vol.66 , pp. 3183-3187
    • Fouchier, R.A.M.1    Groenink, M.2    Kootstra, N.A.3
  • 13
    • 0031575431 scopus 로고    scopus 로고
    • Change in coreceptor use correlates with disease progression in HIV-1- infected individuals
    • DOI 10.1084/jem.185.4.621
    • Connor RI, Sheridan KE, Ceradini D, Choe S, and Landau NR: Change in coreceptor use correlates with disease progression in HIV-1-infected individuals. J Exp Med 1997;185: 621-628. (Pubitemid 27098147)
    • (1997) Journal of Experimental Medicine , vol.185 , Issue.4 , pp. 621-628
    • Connor, R.I.1    Sheridan, K.E.2    Ceradini, D.3    Choe, S.4    Landau, N.R.5
  • 14
    • 0033934948 scopus 로고    scopus 로고
    • Strong association between failure of T cell homeostasis and the syncytium-inducing phenotype among HIV-1-infected men in the Amsterdam Cohort Study
    • DOI 10.1097/00002030-200006160-00012
    • Maas JJJ, Gange SJ, Schuitemaker H, Coutinho RA, van Leeuwen R, and Margolick JB: Strong association between failure of T cell homeostasis and the syncytium-inducing phenotype among HIV-1-infected men in the Amsterdam Cohort Study. AIDS 2000;14:1155-1161. (Pubitemid 30420658)
    • (2000) AIDS , vol.14 , Issue.9 , pp. 1155-1161
    • Maas, J.J.J.1    Gange, S.J.2    Schuitemaker, H.3    Coutinho, R.A.4    Van Leeuwen, R.5    Margolick, J.B.6
  • 16
    • 0003123251 scopus 로고    scopus 로고
    • Hiv-1 coreceptor use: A molecular window into viral tropism. In
    • (Korber B et al., eds.). Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM
    • Doms RW and Moore JP: HIV-1 Coreceptor use: A molecular window into viral tropism. In: HIV Molecular Immunology Database 1997, Vol. IV (Korber B et al., eds.). Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM, 1997, pp. IV-25-36.
    • (1997) HIV Molecular Immunology Database 1997 , vol.4 , pp. 25-36
    • Doms, R.W.1    Moore, J.P.2
  • 17
    • 84885135950 scopus 로고    scopus 로고
    • Biological and molecular aspects of HIV-1 coreceptor usage
    • (Kuiken C et al., eds.). Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM
    • Koning F, van Rij R, and Schuitemaker H: Biological and molecular aspects of HIV-1 coreceptor usage. In: HIV Sequence Compendium 2002 (Kuiken C et al., eds.). Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM, 2002, pp. 24-42.
    • HIV Sequence Compendium 2002 , pp. 24-42
    • Koning, F.1    Van Rij, R.2    Schuitemaker, H.3
  • 20
    • 79251483142 scopus 로고    scopus 로고
    • Clinical significance of HIV-1 coreceptor usage
    • Schuitemaker H, van't Wout AB, and Lusso P: Clinical significance of HIV-1 coreceptor usage. J Transl Med 2011; 9(Suppl 1):S5.
    • (2011) J Transl Med , vol.9 , Issue.SUPPL. 1 , pp. 5
    • Schuitemaker, H.1    Van't Wout, A.B.2    Lusso, P.3
  • 21
    • 84870666711 scopus 로고    scopus 로고
    • Reconstructing the dynamics of hiv evolution within hosts from serial deep sequence data
    • Poon AFY, Swenson LC, Bunnik EM, et al.: Reconstructing the dynamics of HIV evolution within hosts from serial deep sequence data. PLoS Comput Biol 2012;8:e1002753.
    • (2012) PLoS Comput Biol , vol.8 , pp. 1002753
    • Poon, A.F.Y.1    Swenson, L.C.2    Bunnik, E.M.3
  • 22
    • 0035918220 scopus 로고    scopus 로고
    • N-linked glycosylation of the hiv type-1 gp120 envelope glycoprotein as a major determinant of ccr5 and cxcr4 coreceptor utilization
    • The abbreviations of the amino acids of the glycosylation motif are N for asparagine (the glycosylation site), T for threonine, S for serine, and X for any amino acids except for proline
    • Pollakis G, Kang S, Kliphuis A, Chalaby MI, Goudsmit J, and Paxton WA: N-linked glycosylation of the HIV type-1 gp120 envelope glycoprotein as a major determinant of CCR5 and CXCR4 coreceptor utilization. J Biol Chem 2001;276:13433-13441. The abbreviations of the amino acids of the glycosylation motif are N for asparagine (the glycosylation site), T for threonine, S for serine, and X for any amino acids except for proline.
    • (2001) J Biol Chem , vol.276 , pp. 13433-13441
    • Pollakis, G.1    Kang, S.2    Kliphuis, A.3    Chalaby, M.I.4    Goudsmit, J.5    Paxton, W.A.6
  • 24
    • 84886606682 scopus 로고    scopus 로고
    • http://hiv.lanl.gov/
  • 25
    • 84886633913 scopus 로고    scopus 로고
    • http://aids.gov/HIV-aids-basics/
  • 26
    • 84886616395 scopus 로고    scopus 로고
    • http://geno2pheno.org/
  • 27
    • 84886634320 scopus 로고    scopus 로고
    • http://indra.mullins.microbiol.washington.edu/webpssm/.
  • 29
    • 34548261959 scopus 로고    scopus 로고
    • Current v3 genotyping algorithms are inadequate for predicting x4 co-receptor usage in clinical isolates
    • Low AJ, Dong W, Chan D, et al.: Current V3 genotyping algorithms are inadequate for predicting X4 co-receptor usage in clinical isolates. AIDS 2007;21:F19-F26.
    • (2007) AIDS , vol.21
    • Low, A.J.1    Dong, W.2    Chan, D.3
  • 30
    • 33646444564 scopus 로고    scopus 로고
    • A reliable phenotype predictor for human immunodeficiency virus type 1 subtype c based on envelope v3 sequences
    • JensenMA, CoetzerM, van 'tWout AB,Morris L, andMullins JI: A reliable phenotype predictor for human immunodeficiency virus type 1 subtype C based on envelope V3 sequences. J Virol 2006;80:4698-4704.
    • (2006) J Virol , vol.80 , pp. 4698-4704
    • Jensen, M.A.1    Coetzer, M.2    Van 'tWout, A.B.3    Morris, L.4    Mullins, J.I.5
  • 32
    • 77957271477 scopus 로고    scopus 로고
    • Accurate and efficient gp120 v3 loop structure based models for the determination of HIV-1 co-receptor usage
    • Masso M and Vaisman II: Accurate and efficient gp120 V3 loop structure based models for the determination of HIV-1 co-receptor usage. BMC Bioinform 2010;11:494.
    • (2010) BMC Bioinform , vol.11 , pp. 494
    • Masso, M.1    Vaisman, I.I.2
  • 33
    • 77954992105 scopus 로고    scopus 로고
    • Auto-mute: Web-based tools for predicting stability changes in proteins due to single amino acid replacements
    • Masso M and Vaisman II: AUTO-MUTE: Web-based tools for predicting stability changes in proteins due to single amino acid replacements. Protein Eng Des Sel 2010;23:683-687.
    • (2010) Protein Eng Des Sel , vol.23 , pp. 683-687
    • Masso, M.1    Vaisman, I.I.2
  • 35
    • 34047202703 scopus 로고    scopus 로고
    • Structural descriptors of gp120 v3 loop for the prediction of HIV-1 coreceptor usage
    • Sander O, Sing T, Sommer I, et al.: Structural descriptors of gp120 V3 loop for the prediction of HIV-1 coreceptor usage. Plos Comput Biol 2007;3:555-564.
    • (2007) Plos Comput Biol , vol.3 , pp. 555-564
    • Sander, O.1    Sing, T.2    Sommer, I.3
  • 37
    • 35648983524 scopus 로고    scopus 로고
    • Improved prediction of coreceptor usage phenotype of HIV-1 based on combined features of V3 loop sequence using random forest
    • Xu S, Huang X, Xu H, and Zhang C: Improved prediction of coreceptor usage and phenotype of HIV-1 based on combined features of V3 loop sequence using random forest. J Microbiol 2007;45:441-444.
    • (2007) J Microbiol , vol.45 , pp. 441-444
    • Xu, S.1    Huang, X.2    Xu, H.3    Zhang, C.4
  • 38
    • 0035884899 scopus 로고    scopus 로고
    • Improved success of phenotype prediction of the human immunodeficiency virus type 1 from envelope variable loop 3 sequence using neural networks
    • DOI 10.1006/viro.2001.1087
    • Resch W, Hoffman N, and Swanstrom R: Improved success of phenotype prediction of the human immunodeficiency virus type 1 from envelope variable loop 3 sequence using neural networks. Virology 2001;288:51-62. (Pubitemid 32846473)
    • (2001) Virology , vol.288 , Issue.1 , pp. 51-62
    • Resch, W.1    Hoffman, N.2    Swanstrom, R.3
  • 39
    • 0034523325 scopus 로고    scopus 로고
    • Envelope V3 amino acid sequence predicts HIV-1 phenotype (co-receptor usage and tropism for macrophages) [1]
    • DOI 10.1097/00002030-200012220-00016
    • Briggs DR, Tuffle DL, Sleasman JW, and Goodenow MM: Envelope V3 amino acid sequence predicts HIV-1 phenotype (co-receptor usage and tropism for macrophages). AIDS 2000;14:2937-2939. (Pubitemid 32042758)
    • (2000) AIDS , vol.14 , Issue.18 , pp. 2937-2939
    • Briggs, D.R.1    Tuttle, D.L.2    Sleasman, J.W.3    Goodenow, M.M.4
  • 40
    • 84886605647 scopus 로고    scopus 로고
    • http://aidsmeds.com/list.shtml.
  • 42
    • 73549092165 scopus 로고    scopus 로고
    • Entry inhibitors in the treatment of HIV-1 infection
    • Tilton JC and Doms RW: Entry inhibitors in the treatment of HIV-1 infection. Antiviral Res 2010;85:91-100.
    • (2010) Antiviral Res , vol.85 , pp. 91-100
    • Tilton, J.C.1    Doms, R.W.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.