-
1
-
-
33947617349
-
Biodiesel from microalgae
-
Chisti Y. 2007. Biodiesel from microalgae. Biotechnol. Adv. 25:294-306.
-
(2007)
Biotechnol. Adv.
, vol.25
, pp. 294-306
-
-
Chisti, Y.1
-
2
-
-
77951960609
-
Microalgae as biodiesel and biomass feedstocks: review and analysis of the biochemistry, energetics and economics
-
Williams PJLB, Laurens LML. 2010. Microalgae as biodiesel and biomass feedstocks: review and analysis of the biochemistry, energetics and economics. Energy Environ. Sci. 3:554-590.
-
(2010)
Energy Environ. Sci.
, vol.3
, pp. 554-590
-
-
Williams, P.J.L.B.1
Laurens, L.M.L.2
-
4
-
-
59449094424
-
Microalgae as a raw material for biofuels production
-
Gouveia L, Oliveira A. 2009. Microalgae as a raw material for biofuels production. J. Ind. Microbiol. 36:269-274.
-
(2009)
J. Ind. Microbiol.
, vol.36
, pp. 269-274
-
-
Gouveia, L.1
Oliveira, A.2
-
5
-
-
84879936003
-
Lipid and total fatty acid productivity in photoautotrophic fresh water microalgae: screening studies towards biodiesel production
-
Abomohra AF, Wagner M, El-Sheekh M, Hanelt D. 2012. Lipid and total fatty acid productivity in photoautotrophic fresh water microalgae: screening studies towards biodiesel production. J. Appl. Phycol. 2012:1-6.
-
(2012)
J. Appl. Phycol.
, vol.2012
, pp. 1-6
-
-
Abomohra, A.F.1
Wagner, M.2
El-Sheekh, M.3
Hanelt, D.4
-
6
-
-
84879266014
-
Algal biofuels questioned
-
Waltz E. 2013. Algal biofuels questioned. Nat. Biotechnol. 31:12.
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 12
-
-
Waltz, E.1
-
7
-
-
32044467742
-
Biology and systematics of heterokont and haptophyte algae
-
Andersen RA. 2004. Biology and systematics of heterokont and haptophyte algae. Am. J. Bot. 91:1508-1522.
-
(2004)
Am. J. Bot.
, vol.91
, pp. 1508-1522
-
-
Andersen, R.A.1
-
8
-
-
3142664643
-
The evolution of modern eukaryotic phytoplankton
-
Falkowski PG, Katz ME, Knoll AH, Quigg A, Raven JA, Schofield O, Taylor FJ. 2004. The evolution of modern eukaryotic phytoplankton. Science 305:354-360.
-
(2004)
Science
, vol.305
, pp. 354-360
-
-
Falkowski, P.G.1
Katz, M.E.2
Knoll, A.H.3
Quigg, A.4
Raven, J.A.5
Schofield, O.6
Taylor, F.J.7
-
10
-
-
0034817728
-
Microalgal mass culture systems and methods: their limitation and potential
-
Lee YK. 2001. Microalgal mass culture systems and methods: their limitation and potential. J. Appl. Phycol. 13:307-315.
-
(2001)
J. Appl. Phycol.
, vol.13
, pp. 307-315
-
-
Lee, Y.K.1
-
11
-
-
67649743826
-
Closed photo-bioreactors as tools for biofuel production
-
Lehr F, Posten C. 2009. Closed photo-bioreactors as tools for biofuel production. Curr. Opin. Biotechnol. 20:280-285.
-
(2009)
Curr. Opin. Biotechnol.
, vol.20
, pp. 280-285
-
-
Lehr, F.1
Posten, C.2
-
12
-
-
77953361331
-
Biodiesel from algae: challenges and prospects
-
Scott SA, Davey MP, Dennis JS, Horst I, Howe CJ, Lea-Smith DJ, Smith AG. 2010. Biodiesel from algae: challenges and prospects. Curr. Opin. Biotechnol. 21:277-286.
-
(2010)
Curr. Opin. Biotechnol.
, vol.21
, pp. 277-286
-
-
Scott, S.A.1
Davey, M.P.2
Dennis, J.S.3
Horst, I.4
Howe, C.J.5
Lea-Smith, D.J.6
Smith, A.G.7
-
13
-
-
33845531710
-
Microalgal reactors: a review of enclosed system designs and performances
-
Carvalho AP, Meireles LA, Malcata FX. 2006. Microalgal reactors: a review of enclosed system designs and performances. Biotechnol. Prog. 22:1490-1506.
-
(2006)
Biotechnol. Prog.
, vol.22
, pp. 1490-1506
-
-
Carvalho, A.P.1
Meireles, L.A.2
Malcata, F.X.3
-
14
-
-
0020468012
-
Interactions between bacteria and algae in aquatic ecosystems
-
Cole JJ. 1982. Interactions between bacteria and algae in aquatic ecosystems. Annu. Rev. Ecol. Syst. 13:291-314.
-
(1982)
Annu. Rev. Ecol. Syst.
, vol.13
, pp. 291-314
-
-
Cole, J.J.1
-
15
-
-
84866157284
-
Eukaryotic and prokaryotic microbial communities during microalgal biomass production
-
Lakaniemi AM, Hulatt CJ, Wakeman KD, Thomas DN, Puhakka JA. 2012 Eukaryotic and prokaryotic microbial communities during microalgal biomass production. Bioresour. Technol. 124:387-393.
-
(2012)
Bioresour Technol.
, vol.124
, pp. 387-393
-
-
Lakaniemi, A.M.1
Hulatt, C.J.2
Wakeman, K.D.3
Thomas, D.N.4
Puhakka, J.A.5
-
17
-
-
52649096534
-
Presence of previously undescribed bacterial taxa in non-axenic Chlorella cultures
-
Otsuka S, Abe Y, Fukui R, Nishiyama M, Sendoo K. 2008. Presence of previously undescribed bacterial taxa in non-axenic Chlorella cultures. J. Gen. Appl. Microbiol. 54:187-193.
-
(2008)
J. Gen. Appl. Microbiol.
, vol.54
, pp. 187-193
-
-
Otsuka, S.1
Abe, Y.2
Fukui, R.3
Nishiyama, M.4
Sendoo, K.5
-
18
-
-
11144337491
-
Symbiotic association in Chlorella culture
-
Watanabe K, Takihana N, Aoyagi H, Hanada S, Watanabe Y, Ohmura N, Saiki H, Tanaka H. 2005. Symbiotic association in Chlorella culture. FEMS Microbiol. Ecol. 51:187-196.
-
(2005)
FEMS Microbiol. Ecol.
, vol.51
, pp. 187-196
-
-
Watanabe, K.1
Takihana, N.2
Aoyagi, H.3
Hanada, S.4
Watanabe, Y.5
Ohmura, N.6
Saiki, H.7
Tanaka, H.8
-
19
-
-
77349105688
-
Community composition of bacteria co-cultivated with microalgae in non-axenic algal cultures
-
Ueda H, Otsuka S, Senoo K. 2009. Community composition of bacteria co-cultivated with microalgae in non-axenic algal cultures. Microbiol. Cult. Coll. 25:21-25.
-
(2009)
Microbiol. Cult. Coll.
, vol.25
, pp. 21-25
-
-
Ueda, H.1
Otsuka, S.2
Senoo, K.3
-
23
-
-
80053209396
-
Insights into the evolution of vitamin B12 auxotrophy from sequenced algal genomes
-
Helliwell KE, Wheeler GL, Leptos KC, Goldstein RE, Smith AG. 2011. Insights into the evolution of vitamin B12 auxotrophy from sequenced algal genomes. Mol. Biol. Evol. 28:2921-2933.
-
(2011)
Mol. Biol. Evol.
, vol.28
, pp. 2921-2933
-
-
Helliwell, K.E.1
Wheeler, G.L.2
Leptos, K.C.3
Goldstein, R.E.4
Smith, A.G.5
-
25
-
-
0028973072
-
Algal growth enhancement by bacteria: is consumption of photosynthetic oxygen involved?
-
Mouget JL, Dakhama A, Lavoie MC, de la Noüe J. 1995. Algal growth enhancement by bacteria: is consumption of photosynthetic oxygen involved? FEMS Microbiol. Ecol. 18:35-43.
-
(1995)
FEMS Microbiol Ecol.
, vol.18
, pp. 35-43
-
-
Mouget, J.L.1
Dakhama, A.2
Lavoie, M.C.3
de la Noüe, J.4
-
26
-
-
0018318672
-
Bacterial suppression of Chlorella by hydroxylamine production
-
Berger PS, Rho J, Gunner H. 1979. Bacterial suppression of Chlorella by hydroxylamine production. Water Res. 13:267-273.
-
(1979)
Water Res.
, vol.13
, pp. 267-273
-
-
Berger, P.S.1
Rho, J.2
Gunner, H.3
-
27
-
-
10344227692
-
Metagenomics: application of genomics to uncultured microorganisms
-
Handelsman J. 2004. Metagenomics: application of genomics to uncultured microorganisms. Microbiol. Mol. Biol. Rev. 68:669-685.
-
(2004)
Microbiol. Mol. Biol. Rev.
, vol.68
, pp. 669-685
-
-
Handelsman, J.1
-
28
-
-
79953210780
-
Metagenomic analyses: past and future trends
-
Simon C, Daniel R. 2011. Metagenomic analyses: past and future trends. Appl. Environ. Microbiol. 77:1153-1161.
-
(2011)
Appl. Environ. Microbiol.
, vol.77
, pp. 1153-1161
-
-
Simon, C.1
Daniel, R.2
-
29
-
-
4644354371
-
Metagenomics-the key to the uncultured microbes
-
Streit WR, Schmitz RA. 2004. Metagenomics-the key to the uncultured microbes. Curr. Opin. Microbiol. 7:492-498.
-
(2004)
Curr. Opin. Microbiol.
, vol.7
, pp. 492-498
-
-
Streit, W.R.1
Schmitz, R.A.2
-
30
-
-
71349088748
-
Achievements and new knowledge unraveled by metagenomic approaches
-
Simon C, Daniel R. 2009. Achievements and new knowledge unraveled by metagenomic approaches. Appl. Microbiol. Biotechnol. 85:265-276.
-
(2009)
Appl. Microbiol. Biotechnol.
, vol.85
, pp. 265-276
-
-
Simon, C.1
Daniel, R.2
-
31
-
-
84866168894
-
Functional interactions between the gut microbiota and host metabolism
-
Tremaroli V, Bäckhed F. 2012. Functional interactions between the gut microbiota and host metabolism. Nature 489:242-249.
-
(2012)
Nature
, vol.489
, pp. 242-249
-
-
Tremaroli, V.1
Bäckhed, F.2
-
32
-
-
84866174523
-
Genomic approaches to studying the human microbiota
-
Weinstock GM. 2012. Genomic approaches to studying the human microbiota. Nature 489:250-256.
-
(2012)
Nature
, vol.489
, pp. 250-256
-
-
Weinstock, G.M.1
-
33
-
-
84878666353
-
Metagenomics of microbial life in extreme temperature environments
-
Lewin A, Wentzel A, Valla S. 2013. Metagenomics of microbial life in extreme temperature environments. Curr. Opin. Biotechnol. 24:516-525.
-
(2013)
Curr. Opin. Biotechnol.
, vol.24
, pp. 516-525
-
-
Lewin, A.1
Wentzel, A.2
Valla, S.3
-
34
-
-
80052156440
-
Bacterial community assembly based on functional genes rather than species
-
Burke C, Steinberg P, Rusch D, Kjelleberg S, Thomas T. 2011. Bacterial community assembly based on functional genes rather than species. Proc. Natl. Acad. Sci. U.S.A. 108:14288-14293.
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 14288-14293
-
-
Burke, C.1
Steinberg, P.2
Rusch, D.3
Kjelleberg, S.4
Thomas, T.5
-
35
-
-
84876484844
-
The role of planktonic Flavobacteria in processing algal organic matter in coastal East Antarctica revealed using metagenomics and metaproteomics
-
Williams TJ, Wilkins D, Long E, Evans F, Demaere MZ, Raftery MJ, Cavicchioli R. 2013. The role of planktonic Flavobacteria in processing algal organic matter in coastal East Antarctica revealed using metagenomics and metaproteomics. Environ. Microbiol. 15:1302-1317.
-
(2013)
Environ. Microbiol.
, vol.15
, pp. 1302-1317
-
-
Williams, T.J.1
Wilkins, D.2
Long, E.3
Evans, F.4
Demaere, M.Z.5
Raftery, M.J.6
Cavicchioli, R.7
-
36
-
-
84880303284
-
Irradiance optimization of outdoor microalgal cultures using solar tracked photobioreactors
-
Hindersin S, Leupold M, Kerner M, Hanelt D. 2013. Irradiance optimization of outdoor microalgal cultures using solar tracked photobioreactors. Bioprocess Biosyst. Eng. 36:345-355.
-
(2013)
Bioprocess Biosyst. Eng.
, vol.36
, pp. 345-355
-
-
Hindersin, S.1
Leupold, M.2
Kerner, M.3
Hanelt, D.4
-
39
-
-
0021971186
-
A new medium for the enumeration and subculture of bacteria from potable water
-
Reasoner DJ, Geldreich EE. 1985. A new medium for the enumeration and subculture of bacteria from potable water. Appl. Environ. Microbiol. 49:1-7.
-
(1985)
Appl. Environ. Microbiol.
, vol.49
, pp. 1-7
-
-
Reasoner, D.J.1
Geldreich, E.E.2
-
40
-
-
54649084255
-
Methods for microbial DNA extraction from soil for PCR amplification
-
Yeates C, Gillings MR, Davison AD, Altavilla N, Veal DA. 1998. Methods for microbial DNA extraction from soil for PCR amplification. Biol. Proced. Online 1:40-47.
-
(1998)
Biol. Proced. Online
, vol.1
, pp. 40-47
-
-
Yeates, C.1
Gillings, M.R.2
Davison, A.D.3
Altavilla, N.4
Veal, D.A.5
-
41
-
-
0001857117
-
16S/23S rRNA sequencing
-
Stackebrandt E, Goodfellow MD (ed). John Wiley and Sons, New York, NY.
-
Lane DJ. 1991. 16S/23S rRNA sequencing, p 115-175. In Stackebrandt E, Goodfellow MD (ed), Nucleic acid techniques in bacterial systematics. John Wiley and Sons, New York, NY.
-
(1991)
Nucleic acid techniques in bacterial systematics
, pp. 115-175
-
-
Lane, D.J.1
-
42
-
-
43149115851
-
Velvet: algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821-829.
-
(2008)
Genome Res.
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
43
-
-
84876517441
-
KEGG OC: a large-scale automatic construction of taxonomy-based ortholog clusters
-
Nakaya A, Katayama T, Itoh M, Hiranuka K, Kawashima S, Moriya Y, Okuda S, Tanaka M, Tokimatsu T, Yamanishi Y, Yoshizawa AC, Kanehisa M, Goto S. 2013. KEGG OC: a large-scale automatic construction of taxonomy-based ortholog clusters. Nucleic Acids Res. 41:D353-D357.
-
(2013)
Nucleic Acids Res.
, vol.41
-
-
Nakaya, A.1
Katayama, T.2
Itoh, M.3
Hiranuka, K.4
Kawashima, S.5
Moriya, Y.6
Okuda, S.7
Tanaka, M.8
Tokimatsu, T.9
Yamanishi, Y.10
Yoshizawa, A.C.11
Kanehisa, M.12
Goto, S.13
-
44
-
-
0035162592
-
The COG database: new developments in phylogenetic classification of proteins from complete genomes
-
Tatusov RL, Natale DA, Garkavtsev IV, Tatusova TA, Shankavaram UT, Rao BS, Kiryutin B, Galperin MY, Fedorova ND, Koonin EV. 2001. The COG database: new developments in phylogenetic classification of proteins from complete genomes. Nucleic Acids Res. 29:22-28.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 22-28
-
-
Tatusov, R.L.1
Natale, D.A.2
Garkavtsev, I.V.3
Tatusova, T.A.4
Shankavaram, U.T.5
Rao, B.S.6
Kiryutin, B.7
Galperin, M.Y.8
Fedorova, N.D.9
Koonin, E.V.10
-
45
-
-
38549146894
-
The Pfam protein families database
-
Finn RD, Tate J, Mistry J, Coggill PC, Sammut SJ, Hotz HR, Ceric G, Forslund K, Eddy SR, Sonnhammer ELL, Bateman A. 2008. The Pfam protein families database. Nucleic Acids Res. 36:281-288.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 281-288
-
-
Finn, R.D.1
Tate, J.2
Mistry, J.3
Coggill, P.C.4
Sammut, S.J.5
Hotz, H.R.6
Ceric, G.7
Forslund, K.8
Eddy, S.R.9
Sonnhammer, E.L.L.10
Bateman, A.11
-
46
-
-
0030755830
-
Screening for genetic diversity of isolates of anaerobic Fe(II)-oxidizing bacteria using DGGE and whole-cell hybridization
-
Buchholz-Cleven BEE, Rattunde B, Straub KL. 1997. Screening for genetic diversity of isolates of anaerobic Fe(II)-oxidizing bacteria using DGGE and whole-cell hybridization. Syst. Appl. Microbiol. 20:301-309.
-
(1997)
Syst. Appl. Microbiol.
, vol.20
, pp. 301-309
-
-
Buchholz-Cleven, B.E.E.1
Rattunde, B.2
Straub, K.L.3
-
47
-
-
0027460328
-
Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
-
Muyzer G, de Waal EC, Uitterlinden AG. 1993. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 59:695-700.
-
(1993)
Appl. Environ. Microbiol.
, vol.59
, pp. 695-700
-
-
Muyzer, G.1
de Waal, E.C.2
Uitterlinden, A.G.3
-
48
-
-
84870814915
-
SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data
-
Kopylova E, Noe L, Touzet H. 2012. SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data. Bioinformatics 28:3211-3217.
-
(2012)
Bioinformatics
, vol.28
, pp. 3211-3217
-
-
Kopylova, E.1
Noe, L.2
Touzet, H.3
-
49
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2 Nat
-
Langmead B, Salzberg SL. 2012. Fast gapped-read alignment with Bowtie 2 Nat. Methods 9:357-359.
-
(2012)
Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
50
-
-
77957860163
-
V-Xtractor: an open-source, high-throughput software tool to identify and extract hypervariable regions of small subunit (16S/18S) ribosomal RNA gene sequences
-
Hartmann M, Howes CG, Abarenkov K, Mohn WW, Nilsson RH. 2010. V-Xtractor: an open-source, high-throughput software tool to identify and extract hypervariable regions of small subunit (16S/18S) ribosomal RNA gene sequences. J. Microbiol. Methods 83:250-253.
-
(2010)
J. Microbiol. Methods
, vol.83
, pp. 250-253
-
-
Hartmann, M.1
Howes, C.G.2
Abarenkov, K.3
Mohn, W.W.4
Nilsson, R.H.5
-
51
-
-
0034991379
-
Isolation and biochemical characterization of extracellular polymeric substances from Pseudomonas aeruginosa
-
Wingender J, Strathmann M, Rode A, Leis A, Flemming HC. 2001. Isolation and biochemical characterization of extracellular polymeric substances from Pseudomonas aeruginosa. Methods Enzymol. 336:302-314.
-
(2001)
Methods Enzymol.
, vol.336
, pp. 302-314
-
-
Wingender, J.1
Strathmann, M.2
Rode, A.3
Leis, A.4
Flemming, H.C.5
-
52
-
-
0018128226
-
Lipid extraction of tissues with a low-toxicity solvent
-
Hara A, Radin NS. 1978. Lipid extraction of tissues with a low-toxicity solvent. Anal. Biochem. 90:420-426.
-
(1978)
Anal. Biochem.
, vol.90
, pp. 420-426
-
-
Hara, A.1
Radin, N.S.2
-
53
-
-
33749946901
-
Colorimetric method for determination of sugars and related substances
-
Dubois M, Gilles KA, Hamilton JK, Rebers PA, Smith F. 1956. Colorimetric method for determination of sugars and related substances. Anal. Chem. 28:350-356.
-
(1956)
Anal. Chem.
, vol.28
, pp. 350-356
-
-
Dubois, M.1
Gilles, K.A.2
Hamilton, J.K.3
Rebers, P.A.4
Smith, F.5
-
54
-
-
0025848138
-
Measurement of uronic acids without interference from neutral sugars
-
Filisetti-Cozzi TM, Carpita NC. 1991. Measurement of uronic acids without interference from neutral sugars. Anal. Biochem. 197:157-162.
-
(1991)
Anal. Biochem.
, vol.197
, pp. 157-162
-
-
Filisetti-Cozzi, T.M.1
Carpita, N.C.2
-
56
-
-
0030217982
-
Extraction of extracellular polymers from activated sludge using a cation exchange resin
-
Frølund B, Palmgren R, Keiding K, Nielsen PH. 1996. Extraction of extracellular polymers from activated sludge using a cation exchange resin. Water Res. 30:1749-1758.
-
(1996)
Water Res.
, vol.30
, pp. 1749-1758
-
-
Frølund, B.1
Palmgren, R.2
Keiding, K.3
Nielsen, P.H.4
-
57
-
-
33646548920
-
Isolation and biochemical characterization of two novel metagenome-derived esterases
-
Elend C, Schmeisser C, Leggewie C, Babiak P, Carballeira JD, Steele HL, Reymond JL, Jaeger KE, Streit WR. 2006. Isolation and biochemical characterization of two novel metagenome-derived esterases. Appl. Environ. Microbiol. 72:3637-3645.
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 3637-3645
-
-
Elend, C.1
Schmeisser, C.2
Leggewie, C.3
Babiak, P.4
Carballeira, J.D.5
Steele, H.L.6
Reymond, J.L.7
Jaeger, K.E.8
Streit, W.R.9
-
58
-
-
0028318275
-
Formation of B-vitamins by bacteria during the soaking process of soybeans for tempe fermentation
-
Denter J, Bisping B. 1994. Formation of B-vitamins by bacteria during the soaking process of soybeans for tempe fermentation. Int. J. Food. Microbiol. 22:23-31.
-
(1994)
Int. J. Food. Microbiol.
, vol.22
, pp. 23-31
-
-
Denter, J.1
Bisping, B.2
-
59
-
-
0035163543
-
Direct cloning from enrichment cultures, a reliable strategy for isolation of complete operons and genes from microbial consortia
-
Entcheva P, Liebl W, Johann A, Hartsch T, Streit WR. 2001. Direct cloning from enrichment cultures, a reliable strategy for isolation of complete operons and genes from microbial consortia. Appl. Environ. Microbiol. 67:89-99.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 89-99
-
-
Entcheva, P.1
Liebl, W.2
Johann, A.3
Hartsch, T.4
Streit, W.R.5
-
62
-
-
0035340694
-
The biofilm matrix: an immobilized but dynamic microbial environment
-
Sutherland IW. 2001. The biofilm matrix: an immobilized but dynamic microbial environment. Trends Microbiol. 9:222-227.
-
(2001)
Trends Microbiol.
, vol.9
, pp. 222-227
-
-
Sutherland, I.W.1
-
65
-
-
84857596874
-
Using QIIME to analyze 16S rRNA gene sequences from microbial communities
-
doi:10.1002/0471250953.bi1007s36
-
Kuczynski J, Stombaugh J, Walters WA, Gonzalez A, Caporaso JG, Knight R. 2011. Using QIIME to analyze 16S rRNA gene sequences from microbial communities. Curr. Protoc. Bioinformatics 10:10.7. doi:10.1002/0471250953.bi1007s36.
-
(2011)
Curr. Protoc. Bioinformatics
, vol.10
-
-
Kuczynski, J.1
Stombaugh, J.2
Walters, W.A.3
Gonzalez, A.4
Caporaso, J.G.5
Knight, R.6
-
67
-
-
84945495487
-
Estimating the number of classes via sample coverage
-
Chao A, Lee SM. 1992. Estimating the number of classes via sample coverage. J. Am. Stat. Assoc. 87:210-217.
-
(1992)
J. Am. Stat. Assoc.
, vol.87
, pp. 210-217
-
-
Chao, A.1
Lee, S.M.2
-
68
-
-
0001463548
-
Nonparametric estimation of the number of classes in a population
-
Chao A. 1984. Nonparametric estimation of the number of classes in a population. Scan. J. Statist. 11:265-270.
-
(1984)
Scan. J. Statist.
, vol.11
, pp. 265-270
-
-
Chao, A.1
-
69
-
-
66249131497
-
Global sequencing: a review of current molecular data and new methods available to assess microbial diversity
-
Christen R. 2008. Global sequencing: a review of current molecular data and new methods available to assess microbial diversity. Microbes Environ. 23:253-268.
-
(2008)
Microbes Environ.
, vol.23
, pp. 253-268
-
-
Christen, R.1
-
70
-
-
78149429458
-
Microbiome profiling by Illumina sequencing of combinatorial sequence-tagged PCR products
-
doi:10.1371/journal.pone.0015406
-
Gloor GB, Hummelen R, Macklaim JM, Dickson RJ, Fernandes AD, MacPhee R, Reid G. 2010. Microbiome profiling by Illumina sequencing of combinatorial sequence-tagged PCR products. PLoS One 5:e15406. doi:10.1371/journal.pone.0015406.
-
(2010)
PLoS One
, vol.5
-
-
Gloor, G.B.1
Hummelen, R.2
Macklaim, J.M.3
Dickson, R.J.4
Fernandes, A.D.5
MacPhee, R.6
Reid, G.7
-
71
-
-
57149093416
-
Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing
-
doi:10.1371/journal.pgen.1000255
-
Huse SM, Dethlefsen L, Huber JA, Welch DM, Relman DA, Sogin ML. 2008. Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing. PLoS Genet. 4:e1000255. doi:10.1371/journal.pgen.1000255.
-
(2008)
PLoS Genet.
, vol.4
-
-
Huse, S.M.1
Dethlefsen, L.2
Huber, J.A.3
Welch, D.M.4
Relman, D.A.5
Sogin, M.L.6
-
72
-
-
84871808499
-
Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
-
doi:10.1093/nar/gks808
-
Klindworth A, Pruesse E, Schweer T, Peplies J, Quast C, Horn M, Glockner FO. 2013. Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies. Nucleic Acids Res. 41:e1. doi:10.1093/nar/gks808.
-
(2013)
Nucleic Acids Res.
, vol.41
-
-
Klindworth, A.1
Pruesse, E.2
Schweer, T.3
Peplies, J.4
Quast, C.5
Horn, M.6
Glockner, F.O.7
-
73
-
-
19544377035
-
Chryseobacterium taichungense sp. nov., isolated from contaminated soil
-
Shen FT, Kämpfer P, Young CC, Lai WA, Arun AB. 2005. Chryseobacterium taichungense sp. nov., isolated from contaminated soil. Int. J. Syst. Evol. Microbiol. 55:1301-1304.
-
(2005)
Int. J. Syst. Evol. Microbiol.
, vol.55
, pp. 1301-1304
-
-
Shen, F.T.1
Kämpfer, P.2
Young, C.C.3
Lai, W.A.4
Arun, A.B.5
-
74
-
-
84860490976
-
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
-
Caspi R, Altman T, Dreher K, Fulcher CA, Subhraveti P, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Mueller LA, Ong Q, Paley S, Pujar A, Shearer AG, Travers M, Weerasinghe D, Zhang P, Karp PD. 2012. The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. Nucleic Acids Res. 40:D742-D753.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Caspi, R.1
Altman, T.2
Dreher, K.3
Fulcher, C.A.4
Subhraveti, P.5
Keseler, I.M.6
Kothari, A.7
Krummenacker, M.8
Latendresse, M.9
Mueller, L.A.10
Ong, Q.11
Paley, S.12
Pujar, A.13
Shearer, A.G.14
Travers, M.15
Weerasinghe, D.16
Zhang, P.17
Karp, P.D.18
-
75
-
-
0033214082
-
Bacterial lipolytic enzymes: classification and properties
-
Arpigny JL, Jaeger KE. 1999. Bacterial lipolytic enzymes: classification and properties. Biochem. J. 343:177-183.
-
(1999)
Biochem. J.
, vol.343
, pp. 177-183
-
-
Arpigny, J.L.1
Jaeger, K.E.2
-
76
-
-
84982614009
-
Bacterial lipases
-
Jaeger KE, Ransac S, Dijkstra BW, Colson C, van Heuvel M, Misset O. 1999. Bacterial lipases. FEMS Microbiol. Rev. 15:29-63.
-
(1999)
FEMS Microbiol. Rev.
, vol.15
, pp. 29-63
-
-
Jaeger, K.E.1
Ransac, S.2
Dijkstra, B.W.3
Colson, C.4
van Heuvel, M.5
Misset, O.6
-
77
-
-
0023887173
-
Bacterial electron transport chains
-
Anraku Y. 1988. Bacterial electron transport chains. Annu. Rev. Biochem. 57:101-132.
-
(1988)
Annu. Rev. Biochem.
, vol.57
, pp. 101-132
-
-
Anraku, Y.1
-
79
-
-
84861206347
-
Heterogeneity in Pseudomonas aeruginosa biofilms includes expression of ribosome hibernation factors in the antibiotic-tolerant subpopulation and hypoxia-induced stress response in the metabolically active population
-
Williamson KS, Richards LA, Perez-Osorio AC, Pitts B, McInnerney K, Stewart P, Franklin MJ. 2012. Heterogeneity in Pseudomonas aeruginosa biofilms includes expression of ribosome hibernation factors in the antibiotic-tolerant subpopulation and hypoxia-induced stress response in the metabolically active population. J. Bacteriol. 194:2062-2073.
-
(2012)
J. Bacteriol.
, vol.194
, pp. 2062-2073
-
-
Williamson, K.S.1
Richards, L.A.2
Perez-Osorio, A.C.3
Pitts, B.4
McInnerney, K.5
Stewart, P.6
Franklin, M.J.7
-
81
-
-
0029658689
-
Cobalamin (coenzyme B12): synthesis and biological significance
-
Roth J, Lawrence J, Bobik T. 1996. Cobalamin (coenzyme B12): synthesis and biological significance. Annu. Rev. Microbiol. 50:137-181.
-
(1996)
Annu. Rev. Microbiol.
, vol.50
, pp. 137-181
-
-
Roth, J.1
Lawrence, J.2
Bobik, T.3
-
82
-
-
27744591716
-
Algae acquire vitamin B12 through a symbiotic relationship with bacteria
-
Croft MT, Lawrence AD, Raux-Deery E, Warren MJ, Smith AG. 2005. Algae acquire vitamin B12 through a symbiotic relationship with bacteria. Nature 438:90-93.
-
(2005)
Nature
, vol.438
, pp. 90-93
-
-
Croft, M.T.1
Lawrence, A.D.2
Raux-Deery, E.3
Warren, M.J.4
Smith, A.G.5
-
83
-
-
70449187523
-
Studies on the vitamin B12 content of the leguminous plants
-
Duda J, Pedziwilk Z, Zodrow K. 1957. Studies on the vitamin B12 content of the leguminous plants. Acta Microbiol. Pol. 6:233-238.
-
(1957)
Acta Microbiol. Pol.
, vol.6
, pp. 233-238
-
-
Duda, J.1
Pedziwilk, Z.2
Zodrow, K.3
-
84
-
-
84861511784
-
Thiamin biosynthesis: still yielding fascinating biological chemistry
-
Begley TP, Ealick SE, McLafferty FW. 2012. Thiamin biosynthesis: still yielding fascinating biological chemistry. Biochem. Soc. Trans. 40:555-560.
-
(2012)
Biochem. Soc. Trans.
, vol.40
, pp. 555-560
-
-
Begley, T.P.1
Ealick, S.E.2
McLafferty, F.W.3
-
85
-
-
67650729745
-
The structural and biochemical foundations of thiamin biosynthesis
-
Jurgenson CT, Begley TP, Ealick SE. 2009. The structural and biochemical foundations of thiamin biosynthesis. Annu. Rev. Biochem. 78:569-603.
-
(2009)
Annu. Rev. Biochem.
, vol.78
, pp. 569-603
-
-
Jurgenson, C.T.1
Begley, T.P.2
Ealick, S.E.3
-
86
-
-
0037364908
-
Biotin in microbes, the genes involved in its biosynthesis, its biochemical role and perspectives for biotechnological production
-
Streit WR, Entcheva P. 2003. Biotin in microbes, the genes involved in its biosynthesis, its biochemical role and perspectives for biotechnological production. Appl. Microbiol. Biotechnol. 61:21-31.
-
(2003)
Appl. Microbiol. Biotechnol.
, vol.61
, pp. 21-31
-
-
Streit, W.R.1
Entcheva, P.2
-
87
-
-
79956086881
-
Closing in on complete pathways of biotin biosynthesis
-
Lin S, Cronan JE. 2011. Closing in on complete pathways of biotin biosynthesis. Mol. Biosyst. 7:1811-1821.
-
(2011)
Mol. Biosyst.
, vol.7
, pp. 1811-1821
-
-
Lin, S.1
Cronan, J.E.2
-
88
-
-
60349108749
-
The developmental model of microbial biofilms: ten years of a paradigm up for review
-
Monds RD, O'Toole GA. 2009. The developmental model of microbial biofilms: ten years of a paradigm up for review. Trends Microbiol. 17:73-87.
-
(2009)
Trends Microbiol.
, vol.17
, pp. 73-87
-
-
Monds, R.D.1
O'Toole, G.A.2
-
89
-
-
33745726455
-
Dynamics of development and dispersal in sessile microbial communities: examples from Pseudomonas aeruginosa and Pseudomonas putida model biofilms
-
Klausen M, Gjermansen M, Kreft JU, Tolker-Nielsen T. 2006. Dynamics of development and dispersal in sessile microbial communities: examples from Pseudomonas aeruginosa and Pseudomonas putida model biofilms. FEMS Microbiol. Lett. 261:1-11.
-
(2006)
FEMS Microbiol. Lett.
, vol.261
, pp. 1-11
-
-
Klausen, M.1
Gjermansen, M.2
Kreft, J.U.3
Tolker-Nielsen, T.4
-
90
-
-
84874904560
-
Exploiting quorum sensing to confuse bacterial pathogens
-
LaSarre B, Federle MJ. 2013. Exploiting quorum sensing to confuse bacterial pathogens. Microbiol. Mol. Biol. Rev. 77:73-111.
-
(2013)
Microbiol. Mol. Biol. Rev.
, vol.77
, pp. 73-111
-
-
LaSarre, B.1
Federle, M.J.2
-
91
-
-
78651408197
-
Quorum sensing in Gram-negative bacteria: small-molecule modulation of AHL and AI-2 quorum sensing pathways
-
Galloway WR, Hodgkinson JT, Bowden SD, Welch M, Spring DR. 2011. Quorum sensing in Gram-negative bacteria: small-molecule modulation of AHL and AI-2 quorum sensing pathways. Chem. Rev. 111:28-67.
-
(2011)
Chem. Rev.
, vol.111
, pp. 28-67
-
-
Galloway, W.R.1
Hodgkinson, J.T.2
Bowden, S.D.3
Welch, M.4
Spring, D.R.5
-
92
-
-
79953007909
-
Microbial metagenomics: beyond the genome
-
Gilbert JA, Dupont CL. 2011. Microbial metagenomics: beyond the genome. Annu. Rev. Mar. Sci. 3:347-371.
-
(2011)
Annu. Rev. Mar. Sci.
, vol.3
, pp. 347-371
-
-
Gilbert, J.A.1
Dupont, C.L.2
-
93
-
-
20244376755
-
Comparative metagenomics of microbial communities
-
Tringe SG, von Mering C, Kobayashi A, Salamov AA, Chen K, Chang HW, Podar M, Short JM, Mathur EJ, Detter JC, Bork P, Hugenholtz P, Rubin EM. 2005. Comparative metagenomics of microbial communities. Science 308:554-557.
-
(2005)
Science
, vol.308
, pp. 554-557
-
-
Tringe, S.G.1
von Mering, C.2
Kobayashi, A.3
Salamov, A.A.4
Chen, K.5
Chang, H.W.6
Podar, M.7
Short, J.M.8
Mathur, E.J.9
Detter, J.C.10
Bork, P.11
Hugenholtz, P.12
Rubin, E.M.13
-
94
-
-
72949116371
-
Phylogenetic diversity and metabolic potential revealed in a glacier ice metagenome
-
Simon C, Wiezer A, Strittmatter AW, Daniel R. 2009. Phylogenetic diversity and metabolic potential revealed in a glacier ice metagenome. Appl. Environ. Microbiol. 75:7519-7526.
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 7519-7526
-
-
Simon, C.1
Wiezer, A.2
Strittmatter, A.W.3
Daniel, R.4
-
95
-
-
1542377296
-
Community structure and metabolism through reconstruction of microbial genomes from the environment
-
Tyson GW, Chapman J, Hugenholtz P, Allen EE, Ram RJ, Richardson PM, Solovyev VV, Rubin EM, Rokhsar DS, Banfield JF. 2004. Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 428:37-43.
-
(2004)
Nature
, vol.428
, pp. 37-43
-
-
Tyson, G.W.1
Chapman, J.2
Hugenholtz, P.3
Allen, E.E.4
Ram, R.J.5
Richardson, P.M.6
Solovyev, V.V.7
Rubin, E.M.8
Rokhsar, D.S.9
Banfield, J.F.10
-
96
-
-
2142687116
-
Metagenome survey of biofilms in drinking-water networks
-
Schmeisser C, Stöckigt C, Raasch C, Wingender J, Timmis KN, Wenderoth DF, Flemming HC, Liesegang H, Schmitz RA, Jaeger KE, Streit WR. 2003. Metagenome survey of biofilms in drinking-water networks. Appl. Environ. Microbiol. 69:7298-7309.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 7298-7309
-
-
Schmeisser, C.1
Stöckigt, C.2
Raasch, C.3
Wingender, J.4
Timmis, K.N.5
Wenderoth, D.F.6
Flemming, H.C.7
Liesegang, H.8
Schmitz, R.A.9
Jaeger, K.E.10
Streit, W.R.11
-
97
-
-
84862573314
-
Metagenome analyses of corroded concrete wastewater pipe biofilms reveal a complex microbial system
-
Gomez-Alvarez V, Revetta RP, Santo Domingo JW. 2012. Metagenome analyses of corroded concrete wastewater pipe biofilms reveal a complex microbial system. BMC Microbiol. 12:122.
-
(2012)
BMC Microbiol.
, vol.12
, pp. 122
-
-
Gomez-Alvarez, V.1
Revetta, R.P.2
Santo Domingo, J.W.3
-
98
-
-
72649088719
-
Abundant transposases encoded by the metagenome of a hydrothermal chimney biofilm
-
Brazelton WJ, Baross JA. 2009. Abundant transposases encoded by the metagenome of a hydrothermal chimney biofilm. ISME J. 3:1420-1424.
-
(2009)
ISME J.
, vol.3
, pp. 1420-1424
-
-
Brazelton, W.J.1
Baross, J.A.2
-
99
-
-
84355162257
-
Community genomic analysis of an extremely acidophilic sulfur-oxidizing biofilm
-
Jones DS, Albrecht HL, Dawson KS, Schaperdoth I, Freeman KH, Pi Y, Pearson A, Macalady JL. 2012. Community genomic analysis of an extremely acidophilic sulfur-oxidizing biofilm. ISME J. 6:158-170.
-
(2012)
ISME J.
, vol.6
, pp. 158-170
-
-
Jones, D.S.1
Albrecht, H.L.2
Dawson, K.S.3
Schaperdoth, I.4
Freeman, K.H.5
Pi, Y.6
Pearson, A.7
Macalady, J.L.8
|