-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. et al. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
-
(1990)
J. Mol. Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.1
-
2
-
-
84870800556
-
Redesigning the string hash table, burst trie, and bst to exploit cache
-
Askitis, N. and Zobel, J. (2010) Redesigning the string hash table, burst trie, and bst to exploit cache. ACM JEA, 15, 7-8.
-
(2010)
ACM JEA
, vol.15
, pp. 7-8
-
-
Askitis, N.1
Zobel, J.2
-
3
-
-
79956087877
-
Directed culturing of microorganisms using metatranscriptomics
-
Bomar, L. et al. (2011) Directed culturing of microorganisms using metatranscriptomics. MBio, 2, e00012-11.
-
(2011)
MBio
, vol.2
-
-
Bomar, L.1
-
4
-
-
2942571539
-
The comparative RNA web (CRW) site: An online database of comparative sequence and structure information for ribosomal, intron, and other RNAs
-
Cannone, J. et al. (2002) The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs. BMC Bioinformatics, 3, 15.
-
(2002)
BMC Bioinformatics
, vol.3
, pp. 15
-
-
Cannone, J.1
-
5
-
-
0031743421
-
Profile hidden Markov models
-
Eddy, S. (1998) Profile hidden Markov models. Bioinformatics, 14, 755-763.
-
(1998)
Bioinformatics
, vol.14
, pp. 755-763
-
-
Eddy, S.1
-
6
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
Edgar, R. (2010) Search and clustering orders of magnitude faster than BLAST. Bioinformatics, 26, 2460-2461.
-
(2010)
Bioinformatics
, vol.26
, pp. 2460-2461
-
-
Edgar, R.1
-
7
-
-
79960045904
-
Gene expression profiling: Metatranscriptomics
-
Gilbert, J. and Hughes, M. (2011) Gene expression profiling: metatranscriptomics. Methods Mol. Biol., 733, 195-205.
-
(2011)
Methods Mol. Biol
, vol.733
, pp. 195-205
-
-
Gilbert, J.1
Hughes, M.2
-
8
-
-
0038564328
-
Burst tries: A fast, efficient data structure for string keys
-
Heinz, S. et al. (2002) Burst tries: a fast, efficient data structure for string keys. ACM Trans. Inf. Syst., 20, 192-223.
-
(2002)
ACM Trans. Inf. Syst
, vol.20
, pp. 192-223
-
-
Heinz, S.1
-
9
-
-
65549160988
-
Identification of ribosomal RNA genes in metagenomic fragments
-
Huang, Y. et al. (2009) Identification of ribosomal RNA genes in metagenomic fragments. Bioinformatics, 25, 1338-1340.
-
(2009)
Bioinformatics
, vol.25
, pp. 1338-1340
-
-
Huang, Y.1
-
10
-
-
80052290460
-
RRNASelector: A computer program for selecting ribosomal RNA encoding sequences from metagenomic and metatranscriptomic shotgun libraries
-
Lee, J. et al. (2011) rRNASelector: a computer program for selecting ribosomal RNA encoding sequences from metagenomic and metatranscriptomic shotgun libraries. J. Microbiol., 49, 689-691.
-
(2011)
J. Microbiol
, vol.49
, pp. 689-691
-
-
Lee, J.1
-
11
-
-
67649884743
-
Fast and accurate short read alignment with burrows-wheeler transform
-
Li, H. and Durbin, R. (2009) Fast and accurate short read alignment with burrows-wheeler transform. Bioinformatics, 25, 1754-1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
12
-
-
2542523843
-
ARB: A software environment for sequence data
-
Ludwig, W. et al. (2004) ARB: a software environment for sequence data. Nucleic Acids Res., 32, 1363-1371.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1363-1371
-
-
Ludwig, W.1
-
13
-
-
0036382768
-
Modeling a minimal ribosome based on comparative sequence analysis
-
Mears, J. et al. (2002)Modeling a minimal ribosome based on comparative sequence analysis. J. Mol. Biol., 321, 215-234.
-
(2002)
J. Mol. Biol
, vol.321
, pp. 215-234
-
-
Mears, J.1
-
14
-
-
25844446812
-
Fast approximate search in large dictionaries
-
Mihov, S. and Schulz, K. (2004) Fast approximate search in large dictionaries. J. Comput. Ling., 30, 451-477.
-
(2004)
J. Comput. Ling
, vol.30
, pp. 451-477
-
-
Mihov, S.1
Schulz, K.2
-
15
-
-
84870807500
-
Universal levenshtein automata
-
Master's Thesis Bulgaria Sofia University
-
Mitankin, P. (2005) Universal Levenshtein Automata. Building and Properties. Master's Thesis. Bulgaria, Sofia University.
-
(2005)
Building and Properties
-
-
Mitankin, P.1
-
16
-
-
65549111754
-
Infernal 1.0: Inference of RNA alignments
-
Nawrocki, E. et al. (2009) Infernal 1.0: inference of RNA alignments. Bioinformatics, 25, 1335-1337.
-
(2009)
Bioinformatics
, vol.25
, pp. 1335-1337
-
-
Nawrocki, E.1
-
17
-
-
27744504822
-
Limitations of mRNA amplification from small-size cell samples
-
Nygaard, V. et al. (2005) Limitations of mRNA amplification from small-size cell samples. BMC Genomics, 6, 147.
-
(2005)
BMC Genomics
, vol.6
, pp. 147
-
-
Nygaard, V.1
-
18
-
-
37549027613
-
Silva: A comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
-
Pruesse, E. et al. (2007) Silva: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res., 35, 7188-7196.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 7188-7196
-
-
Pruesse, E.1
-
19
-
-
54949137701
-
A sequencing simulator for genomics and metagenomics
-
Richter, D. et al. (2008) A sequencing simulator for genomics and metagenomics. PLoS One, 3, e3373.
-
(2008)
PLoS One
, vol.3
-
-
Richter, D.1
-
20
-
-
84856567776
-
Identification and removal of ribosomal RNA sequences from metatranscriptomes
-
Schmieder, R. et al. (2012) Identification and removal of ribosomal RNA sequences from metatranscriptomes. Bioinformatics, 28, 433-435.
-
(2012)
Bioinformatics
, vol.28
, pp. 433-435
-
-
Schmieder, R.1
-
21
-
-
84893371228
-
Fast string correction with Levenshtein automata
-
Schulz, K. and Mihov, S. (2002) Fast string correction with Levenshtein automata. IJDAR, 5, 67-85.
-
(2002)
IJDAR
, vol.5
, pp. 67-85
-
-
Schulz, K.1
Mihov, S.2
-
22
-
-
66149130975
-
Metatranscriptomics reveals unique microbial small RNAs in the ocean's water column
-
Shi, Y. et al. (2009)Metatranscriptomics reveals unique microbial small RNAs in the ocean's water column. Nature, 459, 266-269.
-
(2009)
Nature
, vol.459
, pp. 266-269
-
-
Shi, Y.1
-
23
-
-
34547356049
-
Cache-conscious sorting of large sets of strings with dynamic tries
-
Article No. 1.5 doi: 10.1145/1005813.1041517
-
Sinha, R. and Zobel, J. (2004) Cache-conscious sorting of large sets of strings with dynamic tries. ACM JEA, 9, Article No. 1.5, doi: 10.1145/1005813.1041517.
-
(2004)
ACM JEA
, vol.9
-
-
Sinha, R.1
Zobel, J.2
-
24
-
-
37849016162
-
Cache-efficient string sorting using copying
-
Article No. 1.2 doi: 10.1145/1187436.1187439
-
Sinha, R. et al. (2006) Cache-efficient string sorting using copying. ACM JEA, 11, Article No. 1.2, doi: 10.1145/1187436.1187439.
-
(2006)
ACM JEA
, vol.11
-
-
Sinha, R.1
-
25
-
-
84858444651
-
Metatranscriptomics analysis of sulfur oxidation genes in the endosymbiont of solemnya velum
-
Stewart, F. et al. (2011)Metatranscriptomics analysis of sulfur oxidation genes in the endosymbiont of solemnya velum. Front. Microbiol., 2, 134.
-
(2011)
Front. Microbiol
, vol.2
, pp. 134
-
-
Stewart, F.1
|