Nature and magnitude of aromatic base stacking in DNA and RNA: Quantum chemistry, molecular mechanics, and experiment

Biopolymers

Volumn 99, Issue 12, 2013, Pages 978-988

  Šponer, Jiří ^a,b   Šponer, Judit E ^a,b   Mládek, Arnošt ^a,b   Jurečka, Petr ^c   Banáš, Pavel ^c   Otyepka, Michal ^c  

^a INSTITUTE OF BIOPHYSICS   (Czech Republic)

^b CENTRAL EUROPEAN INSTITUTE OF TECHNOLOGY   (Czech Republic)

^c PALACKÝ UNIVERSITY   (Czech Republic)

Author keywords

nucleic acids; quantum chemical calculations; stacking

Indexed keywords

DISPERSION INTERACTION; ENERGY CONTRIBUTION; MOLECULAR SIMULATIONS; QUANTUM-CHEMICAL CALCULATION; SHORT-RANGE REPULSION; STACKING; THEORETICAL METHODS; THEORETICAL STUDY;

AROMATIC COMPOUNDS; BIOMOLECULES; MOLECULAR STRUCTURE; QUANTUM CHEMISTRY;

NUCLEIC ACIDS;

DNA; RNA;

ANISOTROPY; BASE STACKING; DENSITY FUNCTIONAL THEORY; ELECTRON; INTERACTIONS WITH DNA; INTERACTIONS WITH RNA; MOLECULAR MECHANICS; MOLECULAR STABILITY; QUANTUM CHEMISTRY; REVIEW; STATIC ELECTRICITY; CHEMICAL STRUCTURE; CHEMISTRY; MOLECULAR DYNAMICS; QUANTUM THEORY; THERMODYNAMICS;

DNA; MODELS, MOLECULAR; MOLECULAR DYNAMICS SIMULATION; QUANTUM THEORY; RNA; THERMODYNAMICS;

EID: 84884944777     PISSN: 00063525     EISSN: 10970282     Source Type: Journal    
DOI: 10.1002/bip.22322     Document Type: Review

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