-
1
-
-
72949096858
-
Evolution of host innate defence: insights from Caenorhabditis elegans and primitive invertebrates
-
Irazoqui JE, Urbach JM, Ausubel FM. 2010. Evolution of host innate defence: insights from Caenorhabditis elegans and primitive invertebrates. Nat. Rev. Immunol. 10:47-58.
-
(2010)
Nat. Rev. Immunol.
, vol.10
, pp. 47-58
-
-
Irazoqui, J.E.1
Urbach, J.M.2
Ausubel, F.M.3
-
2
-
-
84857064084
-
Immune defense mechanisms in the Caenorhabditis elegans intestinal epithelium
-
Pukkila-Worley R, Ausubel FM. 2012. Immune defense mechanisms in the Caenorhabditis elegans intestinal epithelium. Curr. Opin. Immunol. 24:3-9.
-
(2012)
Curr. Opin. Immunol.
, vol.24
, pp. 3-9
-
-
Pukkila-Worley, R.1
Ausubel, F.M.2
-
3
-
-
79952634846
-
Genetic and molecular analysis of nematode- microbe interactions
-
Tan M-W, Shapira M. 2011. Genetic and molecular analysis of nematode- microbe interactions. Cell. Microbiol. 13:497-507.
-
(2011)
Cell. Microbiol.
, vol.13
, pp. 497-507
-
-
Tan, M.-W.1
Shapira, M.2
-
4
-
-
77951606304
-
Signal transduction pathways that function in both development and innate immunity
-
Partridge FA, Gravato-Nobre MJ, Hodgkin J. 2010. Signal transduction pathways that function in both development and innate immunity. Dev. Dyn. 239:1330-1336.
-
(2010)
Dev. Dyn.
, vol.239
, pp. 1330-1336
-
-
Partridge, F.A.1
Gravato-Nobre, M.J.2
Hodgkin, J.3
-
5
-
-
1642463846
-
Evolution of the innate immune system: the worm perspective
-
Schulenburg H, Kurz CL, Ewbank JJ. 2004. Evolution of the innate immune system: the worm perspective. Immunol. Rev. 198:36-58.
-
(2004)
Immunol. Rev.
, vol.198
, pp. 36-58
-
-
Schulenburg, H.1
Kurz, C.L.2
Ewbank, J.J.3
-
7
-
-
11844262607
-
Evolutionary perspectives on innate immunity from the study of Caenorhabditis elegans
-
Kim DH, Ausubel FM. 2005. Evolutionary perspectives on innate immunity from the study of Caenorhabditis elegans. Curr. Opin. Immunol. 17:4-10.
-
(2005)
Curr. Opin. Immunol.
, vol.17
, pp. 4-10
-
-
Kim, D.H.1
Ausubel, F.M.2
-
8
-
-
41549093748
-
Genome-wide investigation reveals pathogen-specific and shared signatures in the response of Caenorhabditis elegans to infection
-
doi:10.1186/gb-2007-8-9-r194.
-
Wong D, Bazopoulou D, Pujol N, Tavernarakis N, Ewbank J. 2007. Genome-wide investigation reveals pathogen-specific and shared signatures in the response of Caenorhabditis elegans to infection. Genome Biol. 8:R194. doi:10.1186/gb-2007-8-9-r194.
-
(2007)
Genome Biol
, vol.8
, pp. 194
-
-
Wong, D.1
Bazopoulou, D.2
Pujol, N.3
Tavernarakis, N.4
Ewbank, J.5
-
9
-
-
33746727711
-
Genomic clusters, putative pathogen recognition molecules, and antimicrobial genes are induced by infection of C
-
O'Rourke D, Baban D, Demidova M, Mott R, Hodgkin J. 2006. Genomic clusters, putative pathogen recognition molecules, and antimicrobial genes are induced by infection of C. elegans with M. nematophilum. Genome Res. 16:1005-1016.
-
(2006)
elegans with M. nematophilum. Genome Res.
, vol.16
, pp. 1005-1016
-
-
O'Rourke, D.1
Baban, D.2
Demidova, M.3
Mott, R.4
Hodgkin, J.5
-
10
-
-
79955934878
-
A comprehensive analysis of gene expression changes provoked by bacterial and fungal infection in C. elegans.
-
doi:10.1371/journal.pone.0019055.
-
Engelmann I, Griffon A, Tichit L, Montañana-Sanchis F, Wang G, Reinke V, Waterston RH, Hillier LW, Ewbank JJ. 2011. A comprehensive analysis of gene expression changes provoked by bacterial and fungal infection in C. elegans. PLoS One 6:e19055. doi:10.1371/journal.pone.0019055.
-
(2011)
PLoS One
, vol.6
, pp. 19055
-
-
Engelmann, I.1
Griffon, A.2
Tichit, L.3
Montañana-Sanchis, F.4
Wang, G.5
Reinke, V.6
Waterston, R.H.7
Hillier, L.W.8
Ewbank, J.J.9
-
11
-
-
84867006700
-
System wide analysis of the evolution of innate immunity in the nematode model species Caenorhabditis elegans and Pristionchus pacificus
-
doi:10.1371/journal.pone.0044255.
-
Sinha A, Rae R, Iatsenko I, Sommer RJ. 2012. System wide analysis of the evolution of innate immunity in the nematode model species Caenorhabditis elegans and Pristionchus pacificus. PLoS One 7:e44255. doi:10.1371/journal.pone.0044255.
-
(2012)
PLoS One
, vol.7
, pp. 44255
-
-
Sinha, A.1
Rae, R.2
Iatsenko, I.3
Sommer, R.J.4
-
12
-
-
84861129960
-
Caenorhabditis elegans, a model organism for investigating immunity
-
Marsh EK, May RC. 2012. Caenorhabditis elegans, a model organism for investigating immunity. Appl. Environ. Microbiol. 78:2075-2081.
-
(2012)
Appl. Environ. Microbiol.
, vol.78
, pp. 2075-2081
-
-
Marsh, E.K.1
May, R.C.2
-
13
-
-
48249137383
-
Anti-fungal innate immunity in C
-
doi:101371/journal.ppat.1000105.
-
Pujol N, Zugasti O, Wong D, Couillault C, Kurz CL, Schulenburg H, Ewbank JJ. 2008. Anti-fungal innate immunity in C. elegans is enhanced by evolutionary diversification of antimicrobial peptides. PLoS Pathog. 4:e1000105. doi:10.1371/journal.ppat.1000105.
-
(2008)
elegans is enhanced by evolutionary diversification of antimicrobial peptides. PLoS Pathog
, vol.4
, pp. 1000105
-
-
Pujol, N.1
Zugasti, O.2
Wong, D.3
Couillault, C.4
Kurz, C.L.5
Schulenburg, H.6
Ewbank, J.J.7
-
14
-
-
79851477108
-
Natural and experimental infection of Caenorhabditis nematodes by novel viruses related to nodaviruses
-
doi:101371/journal.pbio.1000586.
-
Félix M-A, Ashe A, Piffaretti J, Wu G, Nuez I, Bélicard T, Jiang Y, Zhao G, Franz CJ, Goldstein LD, Sanroman M, Miska EA, Wang D. 2011. Natural and experimental infection of Caenorhabditis nematodes by novel viruses related to nodaviruses. PLoS Biol. 9:e1000586. doi:10.1371/journal.pbio.1000586.
-
(2011)
PLoS Biol
, vol.9
, pp. 1000586
-
-
Félix, M.-A.1
Ashe, A.2
Piffaretti, J.3
Wu, G.4
Nuez, I.5
Bélicard, T.6
Jiang, Y.7
Zhao, G.8
Franz, C.J.9
Goldstein, L.D.10
Sanroman, M.11
Miska, E.A.12
Wang, D.13
-
15
-
-
79952233647
-
New models of microsporidiosis: infections in zebrafish, C
-
doi:101371/journal.ppat.1001243.
-
Troemel ER. 2011. New models of microsporidiosis: infections in zebrafish, C. elegans, and honey bee. PLoS Pathog. 7:e1001243. doi:10.1371/journal.ppat.1001243.
-
(2011)
elegans, and honey bee. PLoS Pathog
, vol.7
, pp. 1001243
-
-
Troemel, E.R.1
-
16
-
-
84864578686
-
Genome-wide identification of Pseudomonas aeruginosa virulence-related genes using a Caenorhabditis elegans infection model
-
doi:101371/journal.ppat.1002813.
-
Feinbaum RL, Urbach JM, Liberati NT, Djonovic S, Adonizio A, Carvunis A-R, Ausubel FM. 2012. Genome-wide identification of Pseudomonas aeruginosa virulence-related genes using a Caenorhabditis elegans infection model. PLoS Pathog. 8:e1002813. doi:10.1371/journal.ppat.1002813.
-
(2012)
PLoS Pathog
, vol.8
, pp. 1002813
-
-
Feinbaum, R.L.1
Urbach, J.M.2
Liberati, N.T.3
Djonovic, S.4
Adonizio, A.5
Carvunis, A.-R.6
Ausubel, F.M.7
-
17
-
-
0344091555
-
Virulence factors of the human opportunistic pathogen Serratia marcescens identified by in vivo screening
-
Kurz CL, Chauvet S, Andrès E, Aurouze M, Vallet I, Michel GPF, Uh M, Celli J, Filloux A, De Bentzmann S, Steinmetz I, Hoffmann JA, Finlay BB, Gorvel J-P, Ferrandon D, Ewbank JJ. 2003. Virulence factors of the human opportunistic pathogen Serratia marcescens identified by in vivo screening. EMBO J. 22:1451-1460.
-
(2003)
EMBO J.
, vol.22
, pp. 1451-1460
-
-
Kurz, C.L.1
Chauvet, S.2
Andrès, E.3
Aurouze, M.4
Vallet, I.5
Michel, G.P.F.6
Uh, M.7
Celli, J.8
Filloux, A.9
De Bentzmann, S.10
Steinmetz, I.11
Hoffmann, J.A.12
Finlay, B.B.13
Gorvel, J.-P.14
Ferrandon, D.15
Ewbank, J.J.16
-
18
-
-
77952173270
-
Multiple reciprocal adaptations and rapid genetic change upon experimental coevolution of an animal host and its microbial parasite
-
Schulte RD, Makus C, Hasert B, Michiels NK, Schulenburg H. 2010. Multiple reciprocal adaptations and rapid genetic change upon experimental coevolution of an animal host and its microbial parasite. Proc. Natl. Acad. Sci. U. S. A. 107:7359-7364.
-
(2010)
Proc. Natl. Acad. Sci. U. S. A.
, vol.107
, pp. 7359-7364
-
-
Schulte, R.D.1
Makus, C.2
Hasert, B.3
Michiels, N.K.4
Schulenburg, H.5
-
19
-
-
33847624102
-
Mode of action of Bacillus thuringiensis Cry and Cyt toxins and their potential for insect control
-
Bravo A, Gill SS, Soberón M. 2007. Mode of action of Bacillus thuringiensis Cry and Cyt toxins and their potential for insect control. Toxicon 49:423-435.
-
(2007)
Toxicon
, vol.49
, pp. 423-435
-
-
Bravo, A.1
Gill, S.S.2
Soberón, M.3
-
20
-
-
0037418281
-
Bacillus thuringiensis crystal proteins that target nematodes
-
Wei J-Z, Hale K, Carta L, Platzer E, Wong C, Fang S-C, Aroian RV. 2003. Bacillus thuringiensis crystal proteins that target nematodes. Proc. Natl. Acad. Sci. U. S. A. 100:2760-2765.
-
(2003)
Proc. Natl. Acad. Sci. U. S. A.
, vol.100
, pp. 2760-2765
-
-
Wei, J.-Z.1
Hale, K.2
Carta, L.3
Platzer, E.4
Wong, C.5
Fang, S.-C.6
Aroian, R.V.7
-
21
-
-
2442636542
-
Pore worms: using Caenorhabditis elegans to study how bacterial toxins interact with their target host
-
Huffman DL, Bischof LJ, Griffitts JS, Aroian RV. 2004. Pore worms: using Caenorhabditis elegans to study how bacterial toxins interact with their target host. Int. J. Med. Microbiol. 293:599-607.
-
(2004)
Int. J. Med. Microbiol.
, vol.293
, pp. 599-607
-
-
Huffman, D.L.1
Bischof, L.J.2
Griffitts, J.S.3
Aroian, R.V.4
-
22
-
-
0035800468
-
Bt toxin resistance from loss of a putative carbohydrate-modifying enzyme
-
Griffitts JS, Whitacre JL, Stevens DE, Aroian RV. 2001. Bt toxin resistance from loss of a putative carbohydrate-modifying enzyme. Science 293:860-864.
-
(2001)
Science
, vol.293
, pp. 860-864
-
-
Griffitts, J.S.1
Whitacre, J.L.2
Stevens, D.E.3
Aroian, R.V.4
-
23
-
-
3342901591
-
Mitogen-activated protein kinase pathways defend against bacterial pore-forming toxins
-
Huffman DL, Abrami L, Sasik R, Corbeil J, Van der Goot FG, Aroian RV. 2004. Mitogen-activated protein kinase pathways defend against bacterial pore-forming toxins. Proc. Natl. Acad. Sci. U. S. A. 101:10995-11000.
-
(2004)
Proc. Natl. Acad. Sci. U. S. A.
, vol.101
, pp. 10995-11000
-
-
Huffman, D.L.1
Abrami, L.2
Sasik, R.3
Corbeil, J.4
Van der Goot, F.G.5
Aroian, R.V.6
-
24
-
-
74549201550
-
Hypoxia and the hypoxic response pathway protect against pore-forming toxins in C
-
doi:101371/journal.ppat.1000689
-
Bellier A, Chen C-S, Kao C-Y, Cinar HN, Aroian RV. 2009. Hypoxia and the hypoxic response pathway protect against pore-forming toxins in C. elegans. PLoS Pathog. 5:e1000689. doi:10.1371/journal.ppat.1000689.
-
(2009)
elegans. PLoS Pathog
, vol.5
, pp. 1000689
-
-
Bellier, A.1
Chen, C.-S.2
Kao, C.-Y.3
Cinar, H.N.4
Aroian, R.V.5
-
25
-
-
55449127739
-
Activation of the unfolded protein response is required for defenses against bacterial pore-forming toxin in vivo
-
doi:101371/journal.ppat.1000176
-
Bischof LJ, Kao C-Y, Los FCO, Gonzalez MR, Shen Z, Briggs SP, Van der Goot FG, Aroian RV. 2008. Activation of the unfolded protein response is required for defenses against bacterial pore-forming toxin in vivo. PLoS Pathog. 4:e1000176. doi:10.1371/journal.ppat.1000176.
-
(2008)
PLoS Pathog
, vol.4
, pp. 1000176
-
-
Bischof, L.J.1
Kao, C.-Y.2
Los, F.C.O.3
Gonzalez, M.R.4
Shen, Z.5
Briggs, S.P.6
Van der Goot, F.G.7
Aroian, R.V.8
-
26
-
-
79953277148
-
Global functional analyses of cellular responses to pore-forming toxins
-
doi:101371/journal.ppat.1001314
-
Kao C-Y, Los FCO, Huffman DL, Wachi S, Kloft N, Husmann M, Karabrahimi V, Schwartz J-L, Bellier A, Ha C, Sagong Y, Fan H, Ghosh P, Hsieh M, Hsu C-S, Chen L, Aroian RV. 2011. Global functional analyses of cellular responses to pore-forming toxins. PLoS Pathog. 7:e1001314. doi:10.1371/journal.ppat.1001314.
-
(2011)
PLoS Pathog
, vol.7
, pp. 1001314
-
-
Kao, C.-Y.1
Los, F.C.O.2
Huffman, D.L.3
Wachi, S.4
Kloft, N.5
Husmann, M.6
Karabrahimi, V.7
Schwartz, J.-L.8
Bellier, A.9
Ha, C.10
Sagong, Y.11
Fan, H.12
Ghosh, P.13
Hsieh, M.14
Hsu, C.-S.15
Chen, L.16
Aroian, R.V.17
-
27
-
-
79951622570
-
RAB-5-and RAB-11-dependent vesicle-trafficking pathways are required for plasma membrane repair after attack by bacterial pore-forming toxin
-
Los FCO, Kao C-Y, Smitham J, McDonald KL, Ha C, Peixoto CA, Aroian RV. 2011. RAB-5-and RAB-11-dependent vesicle-trafficking pathways are required for plasma membrane repair after attack by bacterial pore-forming toxin. Cell Host Microbe 9:147-157.
-
(2011)
Cell Host Microb
, vol.9
, pp. 147-157
-
-
Los, F.C.O.1
Kao, C.-Y.2
Smitham, J.3
McDonald, K.L.4
Ha, C.5
Peixoto, C.A.6
Aroian, R.V.7
-
28
-
-
84864798405
-
Population dynamics and habitat sharing of natural populations of Caenorhabditis elegans and C
-
doi:101186/1741-7007-10-59
-
Félix M-A, Duveau F. 2012. Population dynamics and habitat sharing of natural populations of Caenorhabditis elegans and C. briggsae. BMC Biol. 10:59. doi:10.1186/1741-7007-10-59.
-
(2012)
briggsae. BMC Biol.
, vol.10
, pp. 59
-
-
Félix, M.-A.1
Duveau, F.2
-
29
-
-
77952911606
-
Haplotype diversity of the nematode Pristionchus pacificus on Réunion in the Indian Ocean suggests multiple independent invasions
-
Herrmann M, Kienle S, Rochat J, Mayer WE, Sommer RJ. 2010. Haplotype diversity of the nematode Pristionchus pacificus on Réunion in the Indian Ocean suggests multiple independent invasions. Biol. J. Linn. Soc. 100:170-179.
-
(2010)
Biol. J. Linn. Soc.
, vol.100
, pp. 170-179
-
-
Herrmann, M.1
Kienle, S.2
Rochat, J.3
Mayer, W.E.4
Sommer, R.J.5
-
30
-
-
47749131907
-
Isolation of naturally associated bacteria of necromenic Pristionchus nematodes and fitness consequences
-
Rae R, Riebesell M, Dinkelacker I, Wang Q, Herrmann M, Weller AM, Dieterich C, Sommer RJ. 2008. Isolation of naturally associated bacteria of necromenic Pristionchus nematodes and fitness consequences. J. Exp. Biol. 211:1927-1936.
-
(2008)
J. Exp. Biol.
, vol.211
, pp. 1927-1936
-
-
Rae, R.1
Riebesell, M.2
Dinkelacker, I.3
Wang, Q.4
Herrmann, M.5
Weller, A.M.6
Dieterich, C.7
Sommer, R.J.8
-
31
-
-
78249256637
-
A subset of naturally isolated Bacillus strains show extreme virulence to the free-living nematodes Caenorhabditis elegans and Pristionchus pacificus
-
Rae R, Iatsenko I, Witte H, Sommer RJ. 2010. A subset of naturally isolated Bacillus strains show extreme virulence to the free-living nematodes Caenorhabditis elegans and Pristionchus pacificus. Environ. Microbiol. 12:3007-3021.
-
(2010)
Environ. Microbiol.
, vol.12
, pp. 3007-3021
-
-
Rae, R.1
Iatsenko, I.2
Witte, H.3
Sommer, R.J.4
-
32
-
-
84863826292
-
The importance of being regular: Caenorhabditis elegans and Pristionchus pacificus defecation mutants are hypersusceptibile to bacterial pathogens
-
Rae R, Witte H, Rödelsperger C, Sommer RJ. 2012. The importance of being regular: Caenorhabditis elegans and Pristionchus pacificus defecation mutants are hypersusceptibile to bacterial pathogens. Int. J. Parasitol. 42:747-753.
-
(2012)
Int. J. Parasitol.
, vol.42
, pp. 747-753
-
-
Rae, R.1
Witte, H.2
Rödelsperger, C.3
Sommer, R.J.4
-
33
-
-
0038047438
-
Long-lived C
-
doi:101126/science.1080147.
-
Garsin DA, Villanueva JM, Begun J, Kim DH, Sifri CD, Calderwood SB, Ruvkun G, Ausubel FM. 2003. Long-lived C. elegans daf-2 mutants are resistant to bacterial pathogens. Science 300:1921. doi:10.1126/science.1080147.
-
(2003)
elegans daf-2 mutants are resistant to bacterial pathogens. Science
, vol.300
, pp. 1921
-
-
Garsin, D.A.1
Villanueva, J.M.2
Begun, J.3
Kim, D.H.4
Sifri, C.D.5
Calderwood, S.B.6
Ruvkun, G.7
Ausubel, F.M.8
-
34
-
-
38449103045
-
Genetic mapping and manipulation: chapter 7-making compound mutants
-
14 June, posting date
-
Fay D. 14 June 2006, posting date. Genetic mapping and manipulation: chapter 7-making compound mutants. In The C. elegans Research Community (ed), WormBook, http://www.wormbook.org.doi/10.1895/wormbook.1.96.2.
-
(2006)
In The C. elegans Research Community (ed), WormBook
-
-
Fay, D.1
-
35
-
-
25444502402
-
Rapid single nucleotide polymorphism mapping in C. elegans.
-
doi:101186/1471-2164-6-118.
-
Davis MW, Hammarlund M, Harrach T, Hullett P, Olsen S, Jorgensen EM. 2005. Rapid single nucleotide polymorphism mapping in C. elegans. BMC Genomics 6:118. doi:10.1186/1471-2164-6-118.
-
(2005)
BMC Genomics
, vol.6
, pp. 118
-
-
Davis, M.W.1
Hammarlund, M.2
Harrach, T.3
Hullett, P.4
Olsen, S.5
Jorgensen, E.M.6
-
36
-
-
0025942107
-
Efficient gene transfer in C. elegans: extrachromosomal maintenance and integration of transforming sequences.
-
Mello CC, Kramer JM, Stinchcomb D, Ambros V. 1991. Efficient gene transfer in C. elegans: extrachromosomal maintenance and integration of transforming sequences. EMBO J. 10:3959-3970.
-
(1991)
EMBO J
, vol.10
, pp. 3959-3970
-
-
Mello, C.C.1
Kramer, J.M.2
Stinchcomb, D.3
Ambros, V.4
-
37
-
-
0036214657
-
PCR fusion-based approach to create reporter gene constructs for expression analysis in transgenic C. elegans.
-
Hobert O. 2002. PCR fusion-based approach to create reporter gene constructs for expression analysis in transgenic C. elegans. Biotechniques 32: 728-730.
-
(2002)
Biotechniques
, vol.32
, pp. 728-730
-
-
Hobert, O.1
-
38
-
-
67649884743
-
Fast and accurate short read alignment with Burrows- Wheeler transform
-
Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows- Wheeler transform. Bioinformatics 25:1754-1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
39
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R. 2009. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25:2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
40
-
-
33646501892
-
Diverse chromatin remodeling genes antagonize the Rb-involved SynMuv pathways in C
-
doi:101371/journal.pgen.0020074
-
Cui M, Kim EB, Han M. 2006. Diverse chromatin remodeling genes antagonize the Rb-involved SynMuv pathways in C. elegans. PLoS Genet. 2:e74. doi:10.1371/journal.pgen.0020074.
-
(2006)
elegans. PLoS Genet
, vol.2
, pp. 74
-
-
Cui, M.1
Kim, E.B.2
Han, M.3
-
41
-
-
84862303959
-
Divergent gene expression in the conserved dauer stage of the nematodes Pristionchus pacificus and Caenorhabditis elegans
-
doi:101186/1471-2164-13-254
-
Sinha A, Sommer RJ, Dieterich C. 2012. Divergent gene expression in the conserved dauer stage of the nematodes Pristionchus pacificus and Caenorhabditis elegans. BMC Genomics 13:254. doi:10.1186/1471-2164-13-254.
-
(2012)
BMC Genomics
, vol.13
, pp. 254
-
-
Sinha, A.1
Sommer, R.J.2
Dieterich, C.3
-
42
-
-
75549084124
-
WormBase: a comprehensive resource for nematode research
-
Harris TW, Antoshechkin I, Bieri T, Blasiar D, Chan J, Chen WJ, De La Cruz N, Davis P, Duesbury M, Fang R, Fernandes J, Han M, Kishore R, Lee R, MüllerH-M, Nakamura C, Ozersky P, Petcherski A, Rangarajan A, Rogers A, Schindelman G, Schwarz EM, Tuli MA, Van Auken K, Wang D, Wang X, Williams G, Yook K, Durbin R, Stein LD, Spieth J, Sternberg PW. 2010. WormBase: a comprehensive resource for nematode research. Nucleic Acids Res. 38:D463-D467.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 463-467
-
-
Harris, T.W.1
Antoshechkin, I.2
Bieri, T.3
Blasiar, D.4
Chan, J.5
Chen, W.J.6
De La Cruz, N.7
Davis, P.8
Duesbury, M.9
Fang, R.10
Fernandes, J.11
Han, M.12
Kishore, R.13
Lee, R.14
Müller, H.-M.15
Nakamura, C.16
Ozersky, P.17
Petcherski, A.18
Rangarajan, A.19
Rogers, A.20
Schindelman, G.21
Schwarz, E.M.22
Tuli, M.A.23
Van Auken, K.24
Wang, D.25
Wang, X.26
Williams, G.27
Yook, K.28
Durbin, R.29
Stein, L.D.30
Spieth, J.31
Sternberg, P.W.32
more..
-
43
-
-
62449145675
-
The G protein-coupled receptor FSHR-1 is required for the Caenorhabditis elegans innate immune response
-
Powell JR, Kim DH, Ausubel FM. 2009. The G protein-coupled receptor FSHR-1 is required for the Caenorhabditis elegans innate immune response. Proc. Natl. Acad. Sci. U. S. A. 106:2782-2787.
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 2782-2787
-
-
Powell, J.R.1
Kim, D.H.2
Ausubel, F.M.3
-
44
-
-
77952376722
-
Phosphorylation of the conserved transcription factor ATF-7 by PMK-1 p38 MAPK regulates innate immunity in Caenorhabditis elegans
-
doi:101371/journal.pgen.1000892.
-
Shivers RP, Pagano DJ, Kooistra T, Richardson CE, Reddy KC, Whitney JK, Kamanzi O, Matsumoto K, Hisamoto N, Kim DH. 2010. Phosphorylation of the conserved transcription factor ATF-7 by PMK-1 p38 MAPK regulates innate immunity in Caenorhabditis elegans. PLoS Genet. 6:e1000892. doi:10.1371/journal.pgen.1000892.
-
(2010)
PLoS Genet
, vol.6
, pp. 1000892
-
-
Shivers, R.P.1
Pagano, D.J.2
Kooistra, T.3
Richardson, C.E.4
Reddy, K.C.5
Whitney, J.K.6
Kamanzi, O.7
Matsumoto, K.8
Hisamoto, N.9
Kim, D.H.10
-
45
-
-
77649135472
-
An essential role for XBP-1 in host protection against immune activation in C. elegans.
-
Richardson CE, Kooistra T, Kim DH. 2010. An essential role for XBP-1 in host protection against immune activation in C. elegans. Nature 463: 1092-1095.
-
(2010)
Nature
, vol.463
, pp. 1092-1095
-
-
Richardson, C.E.1
Kooistra, T.2
Kim, D.H.3
-
46
-
-
70349668990
-
Nucleolar proteins suppress Caenorhabditis elegans innate immunity by inhibiting p53/CEP-1
-
doi:101371/journal.pgen.1000657
-
Fuhrman LE, Goel AK, Smith J, Shianna KV, Aballay A. 2009. Nucleolar proteins suppress Caenorhabditis elegans innate immunity by inhibiting p53/CEP-1. PLoS Genet. 5:e1000657. doi:10.1371/journal.pgen.1000657.
-
(2009)
PLoS Genet
, vol.5
, pp. 1000657
-
-
Fuhrman, L.E.1
Goel, A.K.2
Smith, J.3
Shianna, K.V.4
Aballay, A.5
-
47
-
-
40849098017
-
DAF-16-dependent suppression of immunity during reproduction in Caenorhabditis elegans
-
Miyata S, Begun J, Troemel ER, Ausubel FM. 2008. DAF-16-dependent suppression of immunity during reproduction in Caenorhabditis elegans. Genetics 178:903-918.
-
(2008)
Genetics
, vol.178
, pp. 903-918
-
-
Miyata, S.1
Begun, J.2
Troemel, E.R.3
Ausubel, F.M.4
-
48
-
-
84861459438
-
Systematic analysis of tissuerestricted miRISCs reveals a broad role for microRNAs in suppressing basal activity of the C
-
Kudlow BA, Zhang L, Han M. 2012. Systematic analysis of tissuerestricted miRISCs reveals a broad role for microRNAs in suppressing basal activity of the C. elegans pathogen response. Mol. Cell 46:530-541.
-
(2012)
elegans pathogen response. Mol. Cell
, vol.46
, pp. 530-541
-
-
Kudlow, B.A.1
Zhang, L.2
Han, M.3
-
49
-
-
0017859452
-
Characterization of temperature-sensitive, fertilization- defective mutants of the nematode caenorhabditis elegans
-
Ward S, Miwa J. 1978. Characterization of temperature-sensitive, fertilization- defective mutants of the nematode caenorhabditis elegans. Genetics 88:285-303.
-
(1978)
Genetics
, vol.88
, pp. 285-303
-
-
Ward, S.1
Miwa, J.2
-
50
-
-
53249091939
-
Caenorhabditis elegans mutant allele identification by whole-genome sequencing
-
Sarin S, Prabhu S, O'Meara MM, Pe'er I, Hobert O. 2008. Caenorhabditis elegans mutant allele identification by whole-genome sequencing. Nat. Methods 5:865-867.
-
(2008)
Nat. Methods
, vol.5
, pp. 865-867
-
-
Sarin, S.1
Prabhu, S.2
O'Meara, M.M.3
Pe'er, I.4
Hobert, O.5
-
51
-
-
33748929687
-
The PLZF-like protein TRA-4 cooperates with the Gli-like transcription factor TRA-1 to promote female development in C. elegans.
-
Grote P, Conradt B. 2006. The PLZF-like protein TRA-4 cooperates with the Gli-like transcription factor TRA-1 to promote female development in C. elegans. Dev. Cell 11:561-573.
-
(2006)
Dev. Cell
, vol.11
, pp. 561-573
-
-
Grote, P.1
Conradt, B.2
-
52
-
-
0037178731
-
A conserved p38 MAP kinase pathway in Caenorhabditis elegans innate immunity
-
Kim DH, Feinbaum R, Alloing G, Emerson FE, Garsin DA, Inoue H, Tanaka-Hino M, Hisamoto N, Matsumoto K, Tan M-W, Ausubel FM. 2002. A conserved p38 MAP kinase pathway in Caenorhabditis elegans innate immunity. Science 297:623-626.
-
(2002)
Science
, vol.297
, pp. 623-626
-
-
Kim, D.H.1
Feinbaum, R.2
Alloing, G.3
Emerson, F.E.4
Garsin, D.A.5
Inoue, H.6
Tanaka-Hino, M.7
Hisamoto, N.8
Matsumoto, K.9
Tan, M.-W.10
Ausubel, F.M.11
-
53
-
-
3042685022
-
The Caenorhabditis elegans MAPK phosphatase VHP-1 mediates a novel JNK-like signaling pathway in stress response
-
Mizuno T, Hisamoto N, Terada T, Kondo T, Adachi M, Nishida E, Kim DH, Ausubel FM, Matsumoto K. 2004. The Caenorhabditis elegans MAPK phosphatase VHP-1 mediates a novel JNK-like signaling pathway in stress response. EMBO J. 23:2226-2234.
-
(2004)
EMBO J.
, vol.23
, pp. 2226-2234
-
-
Mizuno, T.1
Hisamoto, N.2
Terada, T.3
Kondo, T.4
Adachi, M.5
Nishida, E.6
Kim, D.H.7
Ausubel, F.M.8
Matsumoto, K.9
-
54
-
-
1142277911
-
Genes required for systemic RNA interference in Caenorhabditis elegans
-
Tijsterman M, May RC, Simmer F, Okihara KL, Plasterk RHA. 2004. Genes required for systemic RNA interference in Caenorhabditis elegans. Curr. Biol. 14:111-116.
-
(2004)
Curr. Biol.
, vol.14
, pp. 111-116
-
-
Tijsterman, M.1
May, R.C.2
Simmer, F.3
Okihara, K.L.4
Plasterk, R.H.A.5
-
55
-
-
21044446786
-
Functional genomic analysis of RNA interference in C. elegans.
-
Kim JK, Gabel HW, Kamath RS, Tewari M, Pasquinelli A, Rual J-F, Kennedy S, Dybbs M, Bertin N, Kaplan JM, Vidal M, Ruvkun G. 2005. Functional genomic analysis of RNA interference in C. elegans. Science 308:1164-1167.
-
(2005)
Science
, vol.308
, pp. 1164-1167
-
-
Kim, J.K.1
Gabel, H.W.2
Kamath, R.S.3
Tewari, M.4
Pasquinelli, A.5
Rual, J.-F.6
Kennedy, S.7
Dybbs, M.8
Bertin, N.9
Kaplan, J.M.10
Vidal, M.11
Ruvkun, G.12
-
56
-
-
0032717319
-
The rde-1 gene, RNA interference, and transposon silencing in C. elegans.
-
Tabara H, Sarkissian M, Kelly WG, Fleenor J, Grishok A, Timmons L, Fire A, Mello CC. 1999. The rde-1 gene, RNA interference, and transposon silencing in C. elegans. Cell 99:123-132.
-
(1999)
Cell
, vol.99
, pp. 123-132
-
-
Tabara, H.1
Sarkissian, M.2
Kelly, W.G.3
Fleenor, J.4
Grishok, A.5
Timmons, L.6
Fire, A.7
Mello, C.C.8
-
57
-
-
34250877012
-
Genes misregulated in C
-
Welker NC, Habig JW, Bass BL. 2007. Genes misregulated in C. elegans deficient in Dicer, RDE-4, or RDE-1 are enriched for innate immunity genes. RNA 13:1090-1102.
-
(2007)
elegans deficient in Dicer, RDE-4, or RDE-1 are enriched for innate immunity genes. RNA
, vol.13
, pp. 1090-1102
-
-
Welker, N.C.1
Habig, J.W.2
Bass, B.L.3
-
58
-
-
84865797929
-
Role of microRNA processing in adipose tissue in stress defense and longevity
-
Mori MA, Raghavan P, Thomou T, Boucher J, Robida-Stubbs S, Macotela Y, Russell SJ, Kirkland JL, Blackwell TK, Kahn CR. 2012. Role of microRNA processing in adipose tissue in stress defense and longevity. Cell Metab. 16:336-347.
-
(2012)
Cell Metab.
, vol.16
, pp. 336-347
-
-
Mori, M.A.1
Raghavan, P.2
Thomou, T.3
Boucher, J.4
Robida-Stubbs, S.5
Macotela, Y.6
Russell, S.J.7
Kirkland, J.L.8
Blackwell, T.K.9
Kahn, C.R.10
-
59
-
-
77955596719
-
C. elegans germline-deficient mutants respond to pathogen infection using shared and distinct mechanisms.
-
doi:101371/journal.pone.0011777
-
TeKippe M, Aballay A. 2010. C. elegans germline-deficient mutants respond to pathogen infection using shared and distinct mechanisms. PLoS One 5:e11777. doi:10.1371/journal.pone.0011777.
-
(2010)
PLoS One
, vol.5
, pp. 11777
-
-
TeKippe, M.1
Aballay, A.2
-
60
-
-
0037127026
-
Regulation of life-span by germ-line stem cells in Caenorhabditis elegans
-
Arantes-Oliveira N, Apfeld J, Dillin A, Kenyon C. 2002. Regulation of life-span by germ-line stem cells in Caenorhabditis elegans. Science 295: 502-505.
-
(2002)
Science
, vol.295
, pp. 502-505
-
-
Arantes-Oliveira, N.1
Apfeld, J.2
Dillin, A.3
Kenyon, C.4
-
61
-
-
71549147194
-
Requirement for the ERI/DICER complex in endogenous RNA interference and sperm development in Caenorhabditis elegans
-
Pavelec DM, Lachowiec J, Duchaine TF, Smith HE, Kennedy S. 2009. Requirement for the ERI/DICER complex in endogenous RNA interference and sperm development in Caenorhabditis elegans. Genetics 183: 1283-1295.
-
(2009)
Genetics
, vol.183
, pp. 1283-1295
-
-
Pavelec, D.M.1
Lachowiec, J.2
Duchaine, T.F.3
Smith, H.E.4
Kennedy, S.5
-
62
-
-
84869029982
-
The slicing activity of miRNA-specific Argonautes is essential for the miRNA pathway in C. elegans.
-
Bouasker S, Simard MJ. 2012. The slicing activity of miRNA-specific Argonautes is essential for the miRNA pathway in C. elegans. Nucleic Acids Res. 40:10452-10462.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 10452-10462
-
-
Bouasker, S.1
Simard, M.J.2
-
63
-
-
9144224451
-
Processing of primary microRNAs by the Microprocessor complex
-
Denli AM, Tops BBJ, Plasterk RHA, Ketting RF, Hannon GJ. 2004. Processing of primary microRNAs by the Microprocessor complex. Nature 432:231-235.
-
(2004)
Nature
, vol.432
, pp. 231-235
-
-
Denli, A.M.1
Tops, B.B.J.2
Plasterk, R.H.A.3
Ketting, R.F.4
Hannon, G.J.5
-
64
-
-
0034730502
-
Characterization of the histone H1-binding protein, NASP, as a cell cycle-regulated somatic protein
-
Richardson R, Batova IN, Widgren EE, Zheng LX, Whitfield M, MarzluffWF, O'Rand MG. 2000. Characterization of the histone H1-binding protein, NASP, as a cell cycle-regulated somatic protein. J. Biol. Chem. 275:30378-30386.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 30378-30386
-
-
Richardson, R.1
Batova, I.N.2
Widgren, E.E.3
Zheng, L.X.4
Whitfield, M.5
Marzluff, W.F.6
O'Rand, M.G.7
-
65
-
-
33746342798
-
Nuclear autoantigenic sperm protein (NASP), a linker histone chaperone that is required for cell proliferation
-
Richardson RT, Alekseev OM, Grossman G, Widgren EE, Thresher R, Wagner EJ, Sullivan KD, MarzluffWF, O'Rand MG. 2006. Nuclear autoantigenic sperm protein (NASP), a linker histone chaperone that is required for cell proliferation. J. Biol. Chem. 281:21526-21534.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 21526-21534
-
-
Richardson, R.T.1
Alekseev, O.M.2
Grossman, G.3
Widgren, E.E.4
Thresher, R.5
Wagner, E.J.6
Sullivan, K.D.7
Marzluff, W.F.8
O'Rand, M.G.9
-
66
-
-
66749110375
-
Analysis of gene expression profiles in HeLa cells in response to overexpression or siRNA-mediated depletion of NASP
-
doi: 10.1186/1477-7827-7-45
-
Alekseev OM, Richardson RT, Alekseev O, O'Rand MG. 2009. Analysis of gene expression profiles in HeLa cells in response to overexpression or siRNA-mediated depletion of NASP. Reprod. Biol. Endocrinol. 7:45. doi: 10.1186/1477-7827-7-45.
-
(2009)
Reprod. Biol. Endocrinol
, vol.7
, pp. 45
-
-
Alekseev, O.M.1
Richardson, R.T.2
Alekseev, O.3
O'Rand, M.G.4
-
67
-
-
58749113430
-
A three-dimensional view of the molecular machinery of RNA interference
-
Jinek M, Doudna JA. 2009. A three-dimensional view of the molecular machinery of RNA interference. Nature 457:405-412.
-
(2009)
Nature
, vol.457
, pp. 405-412
-
-
Jinek, M.1
Doudna, J.A.2
-
68
-
-
77955644289
-
Mammalian microRNAs predominantly act to decrease target mRNA levels
-
Guo H, Ingolia NT, Weissman JS, Bartel DP. 2010. Mammalian microRNAs predominantly act to decrease target mRNA levels. Nature 466:835-840.
-
(2010)
Nature
, vol.466
, pp. 835-840
-
-
Guo, H.1
Ingolia, N.T.2
Weissman, J.S.3
Bartel, D.P.4
-
69
-
-
31044452870
-
Functional proteomics reveals the biochemical niche of C
-
Duchaine TF, Wohlschlegel JA, Kennedy S, Bei Y, Conte D, Jr, Pang K, Brownell DR, Harding S, Mitani S, Ruvkun G, Yates JR, III, Mello CC. 2006. Functional proteomics reveals the biochemical niche of C. elegans DCR-1 in multiple small-RNA-mediated pathways. Cell 124: 343-354.
-
(2006)
elegans DCR-1 in multiple small-RNA-mediated pathways. Cell
, vol.124
, pp. 343-354
-
-
Duchaine, T.F.1
Wohlschlegel, J.A.2
Kennedy, S.3
Bei, Y.4
Conte Jr., D.5
Pang, K.6
Brownell, D.R.7
Harding, S.8
Mitani, S.9
Ruvkun, G.10
Yates, J.R.11
Mello, C.C.12
-
70
-
-
23944506789
-
Animal virus replication and RNAi-mediated antiviral silencing in Caenorhabditis elegans
-
Lu R, Maduro M, Li F, Li HW, Broitman-Maduro G, Li WX, Ding SW. 2005. Animal virus replication and RNAi-mediated antiviral silencing in Caenorhabditis elegans. Nature 436:1040-1043.
-
(2005)
Nature
, vol.436
, pp. 1040-1043
-
-
Lu, R.1
Maduro, M.2
Li, F.3
Li, H.W.4
Broitman-Maduro, G.5
Li, W.X.6
Ding, S.W.7
-
71
-
-
67651019034
-
Caenorhabditis elegans genomic response to soil bacteria predicts environmentspecific genetic effects on life history traits
-
doi: 101371/journal.pgen.1000503.
-
Coolon JD, Jones KL, Todd TC, Carr BC, Herman MA. 2009. Caenorhabditis elegans genomic response to soil bacteria predicts environmentspecific genetic effects on life history traits. PLoS Genet. 5:e1000503. doi: 10.1371/journal.pgen.1000503.
-
(2009)
PLoS Genet
, vol.5
, pp. 1000503
-
-
Coolon, J.D.1
Jones, K.L.2
Todd, T.C.3
Carr, B.C.4
Herman, M.A.5
-
72
-
-
10344259636
-
Isolation of mutations with dumpy-like phenotypes and of collagen genes in the nematode Pristionchus pacificus
-
Kenning C, Kipping I, Sommer RJ. 2004. Isolation of mutations with dumpy-like phenotypes and of collagen genes in the nematode Pristionchus pacificus. Genesis 40:176-183.
-
(2004)
Genesis
, vol.40
, pp. 176-183
-
-
Kenning, C.1
Kipping, I.2
Sommer, R.J.3
-
74
-
-
84861679962
-
Genomic analysis of immune response against Vibrio cholerae hemolysin in Caenorhabditis elegans
-
doi:101371/journal.pone.0038200
-
Sahu SN, Lewis J, Patel I, Bozdag S, Lee JH, LeClerc JE, Cinar HN. 2012. Genomic analysis of immune response against Vibrio cholerae hemolysin in Caenorhabditis elegans. PLoS One 7:e38200. doi:10.1371/journal.pone.0038200.
-
(2012)
PLoS One
, vol.7
, pp. 38200
-
-
Sahu, S.N.1
Lewis, J.2
Patel, I.3
Bozdag, S.4
Lee, J.H.5
LeClerc, J.E.6
Cinar, H.N.7
-
75
-
-
48249153779
-
Decreased Dicer expression elicits DNA damage and up-regulation of MICA and MICB
-
Tang K-F, Ren H, Cao J, Zeng G-L, Xie J, Chen M, Wang L, He C-X. 2008. Decreased Dicer expression elicits DNA damage and up-regulation of MICA and MICB. J. Cell Biol. 182:233-239.
-
(2008)
J. Cell Biol.
, vol.182
, pp. 233-239
-
-
Tang, K.-F.1
Ren, H.2
Cao, J.3
Zeng, G.-L.4
Xie, J.5
Chen, M.6
Wang, L.7
He, C.-X.8
-
77
-
-
39849096995
-
Regulation of progenitor cell proliferation and granulocyte function by microRNA-223
-
Johnnidis JB, Harris MH, Wheeler RT, Stehling-Sun S, Lam MH, Kirak O, Brummelkamp TR, Fleming MD, Camargo FD. 2008. Regulation of progenitor cell proliferation and granulocyte function by microRNA-223. Nature 451:1125-1129.
-
(2008)
Nature
, vol.451
, pp. 1125-1129
-
-
Johnnidis, J.B.1
Harris, M.H.2
Wheeler, R.T.3
Stehling-Sun, S.4
Lam, M.H.5
Kirak, O.6
Brummelkamp, T.R.7
Fleming, M.D.8
Camargo, F.D.9
-
78
-
-
77958497213
-
Heads up! How the intestinal epithelium safeguards mucosal barrier immunity through the inflammasome and beyond.
-
Cario E. 2010. Heads up! How the intestinal epithelium safeguards mucosal barrier immunity through the inflammasome and beyond. Curr. Opin. Gastroenterol. 26:583-590.
-
(2010)
Curr. Opin. Gastroenterol.
, vol.26
, pp. 583-590
-
-
Cario, E.1
|