-
1
-
-
15744381713
-
Kinetic PCR analysis: real-time monitoring of DNA amplification reactions
-
Higuchi K, Fockler C, Dollinger G, Watson R, (1993) Kinetic PCR analysis: real-time monitoring of DNA amplification reactions. Biotechnology 11: 1026-1030.
-
(1993)
Biotechnology
, vol.11
, pp. 1026-1030
-
-
Higuchi, K.1
Fockler, C.2
Dollinger, G.3
Watson, R.4
-
2
-
-
43249099500
-
Twenty-five years of quantitative PCR for gene expression analysis
-
VanGuilder HD, Vrana KE, Freeman WM, (2008) Twenty-five years of quantitative PCR for gene expression analysis. BioTechniques 44: 619-626.
-
(2008)
BioTechniques
, vol.44
, pp. 619-626
-
-
VanGuilder, H.D.1
Vrana, K.E.2
Freeman, W.M.3
-
3
-
-
77649235913
-
How to do successful gene expression analysis using real-time PCR
-
Derveaux S, Vandesompele J, Hellemans J, (2010) How to do successful gene expression analysis using real-time PCR. Methods 50: 227-230.
-
(2010)
Methods
, vol.50
, pp. 227-230
-
-
Derveaux, S.1
Vandesompele, J.2
Hellemans, J.3
-
4
-
-
21344471138
-
Real-time RT-PCR normalisation; strategies and considerations
-
Huggett JF, Dheda K, Bustin SA, Zumla A, (2005) Real-time RT-PCR normalisation; strategies and considerations. Genes Immun 6: 279-284.
-
(2005)
Genes Immun
, vol.6
, pp. 279-284
-
-
Huggett, J.F.1
Dheda, K.2
Bustin, S.A.3
Zumla, A.4
-
5
-
-
57749121941
-
Refining our standards
-
Martin C, (2008) Refining our standards. The Plant Cell 20: 1727.
-
(2008)
The Plant Cell
, vol.20
, pp. 1727
-
-
Martin, C.1
-
6
-
-
0036668567
-
Quantification of mRNA using real-time reverse transcription PCR (RT-PCR): trends and problems
-
Bustin SA, (2002) Quantification of mRNA using real-time reverse transcription PCR (RT-PCR): trends and problems. Journal of Molecular Endocrinology 29: 23-39.
-
(2002)
Journal of Molecular Endocrinology
, vol.29
, pp. 23-39
-
-
Bustin, S.A.1
-
7
-
-
3142615272
-
Validation of housekeeping genes for normalizing RNA expression in real-time PCR
-
Dheda K, Huggett JF, Bustin SA, Johnson MA, Rook G, et al. (2004) Validation of housekeeping genes for normalizing RNA expression in real-time PCR. BioTechniques 37: 112-119, 112-114, 116, 118-119.
-
(2004)
BioTechniques
, vol.37
, pp. 112-119
-
-
Dheda, K.1
Huggett, J.F.2
Bustin, S.A.3
Johnson, M.A.4
Rook, G.5
-
8
-
-
27644563899
-
The implications of using an inappropriate reference gene for real-time reverse transcription PCR data normalization
-
Dheda K, Huggett JF, Chang JS, Kim LU, Bustin SA, et al. (2005) The implications of using an inappropriate reference gene for real-time reverse transcription PCR data normalization. Analytical Biochemistry 344: 141-143.
-
(2005)
Analytical Biochemistry
, vol.344
, pp. 141-143
-
-
Dheda, K.1
Huggett, J.F.2
Chang, J.S.3
Kim, L.U.4
Bustin, S.A.5
-
9
-
-
0346728757
-
Guideline to reference gene selection for quantitative real-time PCR
-
Radonić A, Thulke S, Mackay IM, Landt O, Siegert W, et al. (2004) Guideline to reference gene selection for quantitative real-time PCR. Biochemical and Biophysical Research Communication 313: 856-862.
-
(2004)
Biochemical and Biophysical Research Communication
, vol.313
, pp. 856-862
-
-
Radonić, A.1
Thulke, S.2
Mackay, I.M.3
Landt, O.4
Siegert, W.5
-
10
-
-
0142182172
-
House keeping genes and gene expression analysis in transplant recipients: a note of caution
-
Gibbs PJ, Cameron C, Tan LC, Sadek SA, Howell WM, (2003) House keeping genes and gene expression analysis in transplant recipients: a note of caution. Transplant Immunology 12: 89-97.
-
(2003)
Transplant Immunology
, vol.12
, pp. 89-97
-
-
Gibbs, P.J.1
Cameron, C.2
Tan, L.C.3
Sadek, S.A.4
Howell, W.M.5
-
11
-
-
47249141242
-
The lack of a systematic validation of reference genes: a serious pitfall undervalued in reverse transcription-polymerase chain reaction (RT-PCR) analysis in plants
-
Gutierrez L, Mauriat M, Gunin S, Pelloux J, Lefebvre J, et al. (2008) The lack of a systematic validation of reference genes: a serious pitfall undervalued in reverse transcription-polymerase chain reaction (RT-PCR) analysis in plants. Plant Biotechnology Journal 6: 609-618.
-
(2008)
Plant Biotechnology Journal
, vol.6
, pp. 609-618
-
-
Gutierrez, L.1
Mauriat, M.2
Gunin, S.3
Pelloux, J.4
Lefebvre, J.5
-
12
-
-
57749113093
-
Towards a Systematic Validation of References in Real-Time RT-PCR
-
Gutierrez L, Mauriat M, Pelloux J, Bellini C, Van Wuytswinkel O, (2008) Towards a Systematic Validation of References in Real-Time RT-PCR. The Plant Cell 20: 1734-1735.
-
(2008)
The Plant Cell
, vol.20
, pp. 1734-1735
-
-
Gutierrez, L.1
Mauriat, M.2
Pelloux, J.3
Bellini, C.4
Van Wuytswinkel, O.5
-
14
-
-
67650930085
-
Normalization of qRT-PCR data: the necessity of adopting a systematic, experimental conditions-specific, validation of references
-
Guenin S, Mauriat M, Pelloux J, Van Wuytswinkel O, Bellini C, et al. (2009) Normalization of qRT-PCR data: the necessity of adopting a systematic, experimental conditions-specific, validation of references. Journal of Experimental Botany 60: 487-493.
-
(2009)
Journal of Experimental Botany
, vol.60
, pp. 487-493
-
-
Guenin, S.1
Mauriat, M.2
Pelloux, J.3
Van Wuytswinkel, O.4
Bellini, C.5
-
15
-
-
17344392308
-
A new mathematical model for relative quantification in real-time RT-PCR
-
Pfaffl MW, (2001) A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Research 29 (9):: e45.
-
(2001)
Nucleic Acids Research
, vol.29
, Issue.9
-
-
Pfaffl, M.W.1
-
16
-
-
0035710746
-
Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2-ΔΔCT Method
-
Livak KJ, Schmittgen TD, (2001) Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2-ΔΔCT Method. Methods 25: 402-408.
-
(2001)
Methods
, vol.25
, pp. 402-408
-
-
Livak, K.J.1
Schmittgen, T.D.2
-
17
-
-
45449087921
-
qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data
-
Hellemans J, Mortier G, De Paepe AD, Speleman F, Vandesompele J, (2007) qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data. Genome Biology 8: R19.
-
(2007)
Genome Biology
, vol.8
-
-
Hellemans, J.1
Mortier, G.2
De Paepe, A.D.3
Speleman, F.4
Vandesompele, J.5
-
18
-
-
64149097786
-
The MIQE Guidelines: Minimum Information for Publication of Quantitative Real-Time PCR Experiments
-
Bustin SA, Benes V, Garson J, Hellemans J, Huggett JF, et al. (2009) The MIQE Guidelines: Minimum Information for Publication of Quantitative Real-Time PCR Experiments. Clinical Chemistry 55: 611-622.
-
(2009)
Clinical Chemistry
, vol.55
, pp. 611-622
-
-
Bustin, S.A.1
Benes, V.2
Garson, J.3
Hellemans, J.4
Huggett, J.F.5
-
19
-
-
77956673889
-
MIQE precis: Practical implementation of minimum standard guidelines for fluorescence-based quantitative real-time PCR experiments
-
Bustin SA, Beaulieu J, Huggett J, Jaggi R, Kibenge F, et al. (2010) MIQE precis: Practical implementation of minimum standard guidelines for fluorescence-based quantitative real-time PCR experiments. BMC Molecular Biology 11: 74.
-
(2010)
BMC Molecular Biology
, vol.11
, pp. 74
-
-
Bustin, S.A.1
Beaulieu, J.2
Huggett, J.3
Jaggi, R.4
Kibenge, F.5
-
20
-
-
84884260874
-
-
USDA-NASS (2013) Noncitrus Fruits and Nuts 2012 Preliminary Summary
-
USDA-NASS (2013) Noncitrus Fruits and Nuts 2012 Preliminary Summary.
-
-
-
-
21
-
-
85050938439
-
Blueberry
-
In: Folta KM, Kole C, editors. Enfield, NH: Science Publishers
-
Rowland LJ, Hancock JF, Bassil NV (2011) Blueberry. In: Folta KM, Kole C, editors. Genetics, Genomics and Breeding of Berries. Enfield, NH: Science Publishers. pp. 1-40.
-
(2011)
Genetics, Genomics and Breeding of Berries
, pp. 1-40
-
-
Rowland, L.J.1
Hancock, J.F.2
Bassil, N.V.3
-
22
-
-
84859137126
-
Generation and analysis of blueberry transcriptome sequences from leaves, developing fruit, and flower buds from cold acclimation through deacclimation
-
Rowland L, Alkharouf N, Darwish O, Ogden E, Polashock J, et al. (2012) Generation and analysis of blueberry transcriptome sequences from leaves, developing fruit, and flower buds from cold acclimation through deacclimation. BMC Plant Biology 12: 46.
-
(2012)
BMC Plant Biology
, vol.12
, pp. 46
-
-
Rowland, L.1
Alkharouf, N.2
Darwish, O.3
Ogden, E.4
Polashock, J.5
-
23
-
-
84871933682
-
Reference gene selection for RT-qPCR analysis of Chrysanthemum lavandulifolium during its flowering stages
-
Fu J, Wang Y, Huang H, Zhang C, Dai S, (2013) Reference gene selection for RT-qPCR analysis of Chrysanthemum lavandulifolium during its flowering stages. Molecular Breeding 31: 205-215.
-
(2013)
Molecular Breeding
, vol.31
, pp. 205-215
-
-
Fu, J.1
Wang, Y.2
Huang, H.3
Zhang, C.4
Dai, S.5
-
24
-
-
84861529088
-
Transcriptome analysis and gene expression atlas for Panicum hallii var. filipes, a diploid model for biofuel research
-
Meyer E, Logan TL, Juenger TE, (2012) Transcriptome analysis and gene expression atlas for Panicum hallii var. filipes, a diploid model for biofuel research. The Plant Journal 70: 879-890.
-
(2012)
The Plant Journal
, vol.70
, pp. 879-890
-
-
Meyer, E.1
Logan, T.L.2
Juenger, T.E.3
-
25
-
-
77955214742
-
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome
-
Severin A, Woody J, Bolon Y-T, Joseph B, Diers B, et al. (2010) RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome. BMC Plant Biology 10: 160.
-
(2010)
BMC Plant Biology
, vol.10
, pp. 160
-
-
Severin, A.1
Woody, J.2
Bolon, Y.-T.3
Joseph, B.4
Diers, B.5
-
26
-
-
32644481938
-
Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis
-
Czechowski T, Stitt M, Altmann T, Udvardi MK, Scheible W-R, (2005) Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiol 139: 5-17.
-
(2005)
Plant Physiol
, vol.139
, pp. 5-17
-
-
Czechowski, T.1
Stitt, M.2
Altmann, T.3
Udvardi, M.K.4
Scheible, W.-R.5
-
28
-
-
33847643776
-
Quantification of mRNA using real-time RT-PCR
-
Nolan T, Hands RE, Bustin SA, (2006) Quantification of mRNA using real-time RT-PCR. Nature Protocols 1: 1559-1582.
-
(2006)
Nature Protocols
, vol.1
, pp. 1559-1582
-
-
Nolan, T.1
Hands, R.E.2
Bustin, S.A.3
-
29
-
-
44949231424
-
Analyzing real-time PCR data by the comparative CT method
-
Schmittgen TD, Livak K, (2008) Analyzing real-time PCR data by the comparative CT method. Nature Protocols 3: 1101-1108.
-
(2008)
Nature Protocols
, vol.3
, pp. 1101-1108
-
-
Schmittgen, T.D.1
Livak, K.2
-
30
-
-
80054056014
-
Characterization of the 3′:5′ ratio for reliable determination of RNA quality
-
Die JV, Obrero AN, González-Verdejo CI, Román B, (2011) Characterization of the 3′:5′ ratio for reliable determination of RNA quality. Analytical Biochemistry 419: 336-338.
-
(2011)
Analytical Biochemistry
, vol.419
, pp. 336-338
-
-
Die, J.V.1
Obrero, A.N.2
González-Verdejo, C.I.3
Román, B.4
-
31
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ, (1990) Basic local alignment search tool. Journal of Molecular Biology 215: 403-410.
-
(1990)
Journal of Molecular Biology
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
32
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker M, (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Research 31: 3406-3415.
-
(2003)
Nucleic Acids Research
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
-
33
-
-
0037435395
-
Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data
-
Ramakers C, Ruijter JM, Deprez RHL, Moorman AFM, (2003) Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data. Neuroscience Letters 339 (1):: 62-66.
-
(2003)
Neuroscience Letters
, vol.339
, Issue.1
, pp. 62-66
-
-
Ramakers, C.1
Ruijter, J.M.2
Deprez, R.H.L.3
Moorman, A.F.M.4
-
34
-
-
77955393165
-
Experimental comparison of relative RT-qPCR quantification approaches for gene expression studies in poplar
-
Regier N, Frey B, (2010) Experimental comparison of relative RT-qPCR quantification approaches for gene expression studies in poplar. BMC Molecular Biology 11: 57.
-
(2010)
BMC Molecular Biology
, vol.11
, pp. 57
-
-
Regier, N.1
Frey, B.2
-
35
-
-
1942475192
-
Real-time RT-PCR profiling of over 1400 Arabidopsistranscription factors: unprecedented sensitivity reveals novel root- and shoot-specific genes
-
Czechowski T, Bari RP, Stitt M, Scheible W-R, Udvardi MK, (2004) Real-time RT-PCR profiling of over 1400 Arabidopsistranscription factors: unprecedented sensitivity reveals novel root- and shoot-specific genes. Plant J 38: 366-379.
-
(2004)
Plant J
, vol.38
, pp. 366-379
-
-
Czechowski, T.1
Bari, R.P.2
Stitt, M.3
Scheible, W.-R.4
Udvardi, M.K.5
-
36
-
-
0037129827
-
Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
-
Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, et al. (2002) Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biology 3: RESEARCH0034.
-
(2002)
Genome Biology
, vol.3
-
-
Vandesompele, J.1
De Preter, K.2
Pattyn, F.3
Poppe, B.4
Van Roy, N.5
-
37
-
-
79960869920
-
A Guideline to Family-Wide Comparative State-of-the-Art Quantitative RT-PCR Analysis Exemplified with a Brassicaceae Cross-Species Seed Germination Case Study
-
Graeber K, Linkies A, Wood ATA, Leubner-Metzger G, (2011) A Guideline to Family-Wide Comparative State-of-the-Art Quantitative RT-PCR Analysis Exemplified with a Brassicaceae Cross-Species Seed Germination Case Study. THE PLANT CELL ONLINE 23: 2045-2063.
-
(2011)
THE PLANT CELL ONLINE
, vol.23
, pp. 2045-2063
-
-
Graeber, K.1
Linkies, A.2
Wood, A.T.A.3
Leubner-Metzger, G.4
-
38
-
-
77950500656
-
Cross-species approaches to seed dormancy and germination: conservation and biodiversity of ABA-regulated mechanisms and the Brassicaceae DOG1 genes
-
Graeber K, Linkies A, Müller K, Wunchova A, Rott A, et al. (2010) Cross-species approaches to seed dormancy and germination: conservation and biodiversity of ABA-regulated mechanisms and the Brassicaceae DOG1 genes. Plant Molecular Biology 73: 67-87.
-
(2010)
Plant Molecular Biology
, vol.73
, pp. 67-87
-
-
Graeber, K.1
Linkies, A.2
Müller, K.3
Wunchova, A.4
Rott, A.5
-
39
-
-
74249122245
-
Peroxidases identified in a subtractive cDNA library approach show tissue-specific transcript abundance and enzyme activity during seed germination of Lepidium sativum
-
Linkies A, Schuster-Sherpa U, Tintelnot S, Leubner-Metzger G, Müller K, (2010) Peroxidases identified in a subtractive cDNA library approach show tissue-specific transcript abundance and enzyme activity during seed germination of Lepidium sativum. Journal of Experimental Botany 61: 491-502.
-
(2010)
Journal of Experimental Botany
, vol.61
, pp. 491-502
-
-
Linkies, A.1
Schuster-Sherpa, U.2
Tintelnot, S.3
Leubner-Metzger, G.4
Müller, K.5
-
40
-
-
80955143016
-
An efficient RNA isolation procedure and identification of reference genes for normalization of gene expression in blueberry
-
Vashisth T, Johnson L, Malladi A, (2011) An efficient RNA isolation procedure and identification of reference genes for normalization of gene expression in blueberry. Plant Cell Reports 30: 2167-2176.
-
(2011)
Plant Cell Reports
, vol.30
, pp. 2167-2176
-
-
Vashisth, T.1
Johnson, L.2
Malladi, A.3
-
41
-
-
77951622939
-
From genome studies to agricultural biotechnology: closing the gap between basic plant science and applied agriculture
-
Cook DR, Varshney RK, (2010) From genome studies to agricultural biotechnology: closing the gap between basic plant science and applied agriculture. Current Opinion in Plant Biology 13: 115-118.
-
(2010)
Current Opinion in Plant Biology
, vol.13
, pp. 115-118
-
-
Cook, D.R.1
Varshney, R.K.2
-
42
-
-
84867642501
-
De novo sequencing and comparative analysis of the blueberry transcriptome to discover putative genes related to antioxidants
-
Li X, Sun H, Pei J, Dong Y, Wang F, et al. (2012) De novo sequencing and comparative analysis of the blueberry transcriptome to discover putative genes related to antioxidants. Gene 511: 54-61.
-
(2012)
Gene
, vol.511
, pp. 54-61
-
-
Li, X.1
Sun, H.2
Pei, J.3
Dong, Y.4
Wang, F.5
-
43
-
-
84855253928
-
Gene Expression and Metabolite Profiling of Developing Highbush Blueberry Fruit Indicates Transcriptional Regulation of Flavonoid Metabolism and Activation of Abscisic Acid Metabolism
-
Zifkin M, Jin A, Ozga JA, Zaharia LI, Schernthaner JP, et al. (2012) Gene Expression and Metabolite Profiling of Developing Highbush Blueberry Fruit Indicates Transcriptional Regulation of Flavonoid Metabolism and Activation of Abscisic Acid Metabolism. Plant Physiology 158: 200-224.
-
(2012)
Plant Physiology
, vol.158
, pp. 200-224
-
-
Zifkin, M.1
Jin, A.2
Ozga, J.A.3
Zaharia, L.I.4
Schernthaner, J.P.5
-
44
-
-
84884673963
-
Advents of genomics in blueberry
-
doi 10.1007/s11032-013-9893-1
-
Die JV, Rowland LJ, (2013) Advents of genomics in blueberry. Molecular Breeding doi:10.1007/s11032-013-9893-1.
-
(2013)
Molecular Breeding
-
-
Die, J.V.1
Rowland, L.J.2
-
45
-
-
79961014660
-
Standardisation and reporting for nucleic acid quantification
-
Huggett J, Bustin SA, (2011) Standardisation and reporting for nucleic acid quantification. Accreditation and Quality Assurance 16: 399-405.
-
(2011)
Accreditation and Quality Assurance
, vol.16
, pp. 399-405
-
-
Huggett, J.1
Bustin, S.A.2
-
46
-
-
84868032308
-
RNA quality assessment: a view from plant qPCR studies
-
Die JV, Román B, (2012) RNA quality assessment: a view from plant qPCR studies. Journal of Experimental Botany 63: 6069-6077.
-
(2012)
Journal of Experimental Botany
, vol.63
, pp. 6069-6077
-
-
Die, J.V.1
Román, B.2
-
47
-
-
84865060842
-
Selection and Validation of Endogenous Reference Genes for qRT-PCR Analysis in Leafy Spurge Euphorbia esula
-
Chao WS, Doǧramaci M, Foley ME, Horvath DP, Anderson JV, (2012) Selection and Validation of Endogenous Reference Genes for qRT-PCR Analysis in Leafy Spurge Euphorbia esula. PLoS ONE 7: e42839.
-
(2012)
PLoS ONE
, vol.7
-
-
Chao, W.S.1
Doǧramaci, M.2
Foley, M.E.3
Horvath, D.P.4
Anderson, J.V.5
-
48
-
-
84855902041
-
Identification of Reference Genes for RT-qPCR Expression Analysis in Arabidopsis and Tomato Seeds
-
Dekkers BJW, Willems L, Bassel GW, van Bolderen-Veldkamp RP, Ligterink W, et al. (2012) Identification of Reference Genes for RT-qPCR Expression Analysis in Arabidopsis and Tomato Seeds. Plant and Cell Physiology 53: 28-37.
-
(2012)
Plant and Cell Physiology
, vol.53
, pp. 28-37
-
-
Dekkers, B.J.W.1
Willems, L.2
Bassel, G.W.3
van Bolderen-Veldkamp, R.P.4
Ligterink, W.5
-
49
-
-
84875048643
-
Careful Selection of Reference Genes Is Required for Reliable Performance of RT-qPCR in Human Normal and Cancer Cell Lines
-
Jacob F, Guertler R, Naim S, Nixdorf S, Fedier A, et al. (2013) Careful Selection of Reference Genes Is Required for Reliable Performance of RT-qPCR in Human Normal and Cancer Cell Lines. PLoS ONE 8: e59180.
-
(2013)
PLoS ONE
, vol.8
-
-
Jacob, F.1
Guertler, R.2
Naim, S.3
Nixdorf, S.4
Fedier, A.5
-
50
-
-
46849114099
-
Antisense inhibition of a pectate lyase gene supports a role for pectin depolymerization in strawberry fruit softening
-
Santiago-Doménech N, Jiménez-Bemúdez S, Matas AJ, Rose JKC, Muñoz-Blanco J, et al. (2008) Antisense inhibition of a pectate lyase gene supports a role for pectin depolymerization in strawberry fruit softening. Journal of Experimental Botany 59: 2769-2779.
-
(2008)
Journal of Experimental Botany
, vol.59
, pp. 2769-2779
-
-
Santiago-Doménech, N.1
Jiménez-Bemúdez, S.2
Matas, A.J.3
Rose, J.K.C.4
Muñoz-Blanco, J.5
|