메뉴 건너뛰기




Volumn 70, Issue 5, 2012, Pages 879-890

Transcriptome analysis and gene expression atlas for Panicum hallii var. filipes, a diploid model for biofuel research

Author keywords

biofuels; gene atlas; gene expression; Panicum; RNA Seq; transcriptome

Indexed keywords

AGRONOMIC TRAITS; BIOMASS PRODUCTIONS; CELL WALL COMPOSITION; DROUGHT TOLERANCES; EXPRESSION PROFILE; GENE EXPRESSION ANALYSIS; GENETIC STUDIES; LIGNIN BIOSYNTHESIS; PANICUM; PHENYLPROPANOID PATHWAYS; RNA-SEQ; SUBSTANTIAL VARIATIONS; SWITCHGRASS; TRANSCRIPTOME ANALYSIS; TRANSCRIPTOMES;

EID: 84861529088     PISSN: 09607412     EISSN: 1365313X     Source Type: Journal    
DOI: 10.1111/j.1365-313X.2012.04938.x     Document Type: Article
Times cited : (38)

References (42)
  • 1
    • 77958471357 scopus 로고    scopus 로고
    • Differential expression analysis for sequence count data
    • Anders, S., and, Huber, W., (2010) Differential expression analysis for sequence count data. Genome Biol. 11, R106.
    • (2010) Genome Biol. , vol.11
    • Anders, S.1    Huber, W.2
  • 3
    • 80055080319 scopus 로고    scopus 로고
    • Comparative transcriptomics of Eastern African cichlid fishes shows signs of positive selection and a large contribution of untranslated regions to genetic diversity
    • Baldo, L., Santos, M.E., and, Salzburger, W., (2011) Comparative transcriptomics of Eastern African cichlid fishes shows signs of positive selection and a large contribution of untranslated regions to genetic diversity. Genome Biol. Evol. 3, 443-455.
    • (2011) Genome Biol. Evol. , vol.3 , pp. 443-455
    • Baldo, L.1    Santos, M.E.2    Salzburger, W.3
  • 5
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini, Y., and, Hochberg, Y., (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Statist. Soc. B, 57, 289-300.
    • (1995) J. R. Statist. Soc. B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 6
    • 79960242685 scopus 로고    scopus 로고
    • Identification of genes involved in cell wall biogenesis in grasses by differential gene expression profiling of elongating and non-elongating maize internodes
    • Bosch, M., Mayer, C.D., Cookson, A., and, Donnison, I.S., (2011) Identification of genes involved in cell wall biogenesis in grasses by differential gene expression profiling of elongating and non-elongating maize internodes. J. Exp. Bot. 62, 3545-3561.
    • (2011) J. Exp. Bot. , vol.62 , pp. 3545-3561
    • Bosch, M.1    Mayer, C.D.2    Cookson, A.3    Donnison, I.S.4
  • 7
    • 36549029334 scopus 로고    scopus 로고
    • Molecular breeding of switchgrass for use as a biofuel crop
    • DOI 10.1016/j.gde.2007.08.012, PII S0959437X07001633, Genomes and Evolution
    • Bouton, J.H., (2007) Molecular breeding of switchgrass for use as a biofuel crop. Curr. Opin. Genet. Dev. 17, 553-558. (Pubitemid 350184306)
    • (2007) Current Opinion in Genetics and Development , vol.17 , Issue.6 , pp. 553-558
    • Bouton, J.H.1
  • 9
    • 78650978686 scopus 로고    scopus 로고
    • Update on mechanisms of plant cell wall biosynthesis: How plants make cellulose and other (1 4)- -d-glycans
    • Carpita, N.C., (2011) Update on mechanisms of plant cell wall biosynthesis: how plants make cellulose and other (1 4)- -d-glycans. Plant Physiol. 155, 171-184.
    • (2011) Plant Physiol. , vol.155 , pp. 171-184
    • Carpita, N.C.1
  • 11
    • 34447319626 scopus 로고    scopus 로고
    • Lignin modification improves fermentable sugar yields for biofuel production
    • Chen, F., and, Dixon, R.A., (2007) Lignin modification improves fermentable sugar yields for biofuel production. Nat. Biotechnol. 25, 759-762.
    • (2007) Nat. Biotechnol. , vol.25 , pp. 759-762
    • Chen, F.1    Dixon, R.A.2
  • 12
    • 78650468948 scopus 로고    scopus 로고
    • Genome-size variation in switchgrass (Panicum virgatum): Flow cytometry and cytology reveal rampant aneuploidy
    • Costich, D.E.F., Sheehan, B., Casler, M.J., Buckler, M.D., and, Edward, S., (2010) Genome-size variation in switchgrass (Panicum virgatum): flow cytometry and cytology reveal rampant aneuploidy. Plant Gen. 3, 130-141.
    • (2010) Plant Gen. , vol.3 , pp. 130-141
    • Costich, D.E.F.1    Sheehan, B.2    Casler, M.J.3    Buckler, M.D.4    Edward, S.5
  • 13
    • 79959300621 scopus 로고    scopus 로고
    • Applications of next generation sequencing in molecular ecology of non-model organisms
    • Ekblom, R., and, Galindo, J., (2011) Applications of next generation sequencing in molecular ecology of non-model organisms. Heredity, 107, 1-15.
    • (2011) Heredity , vol.107 , pp. 1-15
    • Ekblom, R.1    Galindo, J.2
  • 14
    • 77953215952 scopus 로고    scopus 로고
    • Xylan biosynthesis: News from the grass
    • Faik, A., (2010) Xylan biosynthesis: news from the grass. Plant Physiol. 153, 396-402.
    • (2010) Plant Physiol. , vol.153 , pp. 396-402
    • Faik, A.1
  • 16
    • 0036011082 scopus 로고    scopus 로고
    • Rewriting the lignin roadmap
    • DOI 10.1016/S1369-5266(02)00257-1
    • Humphreys, J.M., and, Chapple, C., (2002) Rewriting the lignin roadmap. Curr. Opin. Plant Biol. 5, 224-229. (Pubitemid 34452069)
    • (2002) Current Opinion in Plant Biology , vol.5 , Issue.3 , pp. 224-229
    • Humphreys, J.M.1    Chapple, C.2
  • 18
    • 77956277181 scopus 로고    scopus 로고
    • Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq
    • Lu, T., Lu, G., Fan, D., Zhu, C., Li, W., Zhao, Q., Feng, Q., Zhao, Y., Guo, Y., and, Li, W., (2010) Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq. Genome Res. 20, 1238.
    • (2010) Genome Res. , vol.20 , pp. 1238
    • Lu, T.1    Lu, G.2    Fan, D.3    Zhu, C.4    Li, W.5    Zhao, Q.6    Feng, Q.7    Zhao, Y.8    Guo, Y.9    Li, W.10
  • 20
    • 80052099023 scopus 로고    scopus 로고
    • Profiling gene expression responses of coral larvae (Acropora millepora) to elevated temperature and settlement inducers using a novel RNA-Seq procedure
    • Meyer, E., Aglyamova, G.V., and, Matz, M.V., (2011) Profiling gene expression responses of coral larvae (Acropora millepora) to elevated temperature and settlement inducers using a novel RNA-Seq procedure. Mol. Ecol. 20, 3599-3616.
    • (2011) Mol. Ecol. , vol.20 , pp. 3599-3616
    • Meyer, E.1    Aglyamova, G.V.2    Matz, M.V.3
  • 21
    • 46249106990 scopus 로고    scopus 로고
    • Mapping and quantifying mammalian transcriptomes by RNA-Seq
    • DOI 10.1038/nmeth.1226, PII NMETH.1226
    • Mortazavi, A., Williams, B.A., McCue, K., Schaeffer, L., and, Wold, B., (2008) Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat. Methods, 5, 621-628. (Pubitemid 351911867)
    • (2008) Nature Methods , vol.5 , Issue.7 , pp. 621-628
    • Mortazavi, A.1    Williams, B.A.2    McCue, K.3    Schaeffer, L.4    Wold, B.5
  • 23
    • 78349233134 scopus 로고    scopus 로고
    • Complete switchgrass genetic maps reveal subgenome collinearity, preferential pairing and multilocus interactions
    • Okada, M., Lanzatella, C., Saha, M.C., Bouton, J., Wu, R., and, Tobias, C.M., (2010) Complete switchgrass genetic maps reveal subgenome collinearity, preferential pairing and multilocus interactions. Genetics, 185, 745.
    • (2010) Genetics , vol.185 , pp. 745
    • Okada, M.1    Lanzatella, C.2    Saha, M.C.3    Bouton, J.4    Wu, R.5    Tobias, C.M.6
  • 24
    • 77950337763 scopus 로고    scopus 로고
    • Plant cell wall polymers as precursors for biofuels
    • Pauly, M., and, Keegstra, K., (2010) Plant cell wall polymers as precursors for biofuels. Curr. Opin. Plant Biol. 13, 304-311.
    • (2010) Curr. Opin. Plant Biol. , vol.13 , pp. 304-311
    • Pauly, M.1    Keegstra, K.2
  • 25
    • 5344244656 scopus 로고    scopus 로고
    • R Development Core Team. Vienna, Austria: R Foundation for Statistical Computing.
    • R Development Core Team (2008) R: A Language and Environment for Statistical Computing. Vienna, Austria: R Foundation for Statistical Computing.
    • (2008) R: A Language and Environment for Statistical Computing
  • 26
    • 49649106060 scopus 로고    scopus 로고
    • Genomics of cellulosic biofuels
    • Rubin, E.M., (2008) Genomics of cellulosic biofuels. Nature, 454, 841-845.
    • (2008) Nature , vol.454 , pp. 841-845
    • Rubin, E.M.1
  • 30
    • 77955898246 scopus 로고    scopus 로고
    • Advances in modifying lignin for enhanced biofuel production
    • Simmons, B.A., Loqué, D., and, Ralph, J., (2010) Advances in modifying lignin for enhanced biofuel production. Curr. Opin. Plant Biol. 13, 312-319.
    • (2010) Curr. Opin. Plant Biol. , vol.13 , pp. 312-319
    • Simmons, B.A.1    Loqué, D.2    Ralph, J.3
  • 36
    • 41149167170 scopus 로고    scopus 로고
    • Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing
    • DOI 10.1111/j.1365-294X.2008.03666.x
    • Vera, J.C., Wheat, C.W., Fescemyer, H.W., Frilander, M.J., Crawford, D.L., Hanski, I., and, Marden, J.H., (2008) Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing. Mol. Ecol. 17, 1636-1647. (Pubitemid 351441703)
    • (2008) Molecular Ecology , vol.17 , Issue.7 , pp. 1636-1647
    • Vera, J.C.1    Wheat, C.W.2    Fescemyer, H.W.3    Frilander, M.J.4    Crawford, D.L.5    Hanski, I.6    Marden, J.H.7
  • 37
    • 43849088205 scopus 로고    scopus 로고
    • Unique aspects of the grass cell wall
    • Vogel, J., (2008) Unique aspects of the grass cell wall. Curr. Opin. Plant Biol. 11, 301-307.
    • (2008) Curr. Opin. Plant Biol. , vol.11 , pp. 301-307
    • Vogel, J.1
  • 39
  • 40
    • 0033229970 scopus 로고    scopus 로고
    • The economics of ribosome biosynthesis in yeast
    • DOI 10.1016/S0968-0004(99)01460-7, PII S0968000499014607
    • Warner, J.R., (1999) The economics of ribosome biosynthesis in yeast. Trends Biochem. Sci. 24, 437-440. (Pubitemid 29528205)
    • (1999) Trends in Biochemical Sciences , vol.24 , Issue.11 , pp. 437-440
    • Warner, J.R.1
  • 42
    • 79960848474 scopus 로고    scopus 로고
    • Post-glacial evolution of Panicum virgatum: Centers of diversity and gene pools revealed by SSR markers and cpDNA sequences
    • Zhang, Y., Zalapa, J.E., Jakubowski, A.R., Price, D.L., Acharya, A., Wei, Y., Brummer, E.C., Kaeppler, S.M., and, Casler, M.D., (2011) Post-glacial evolution of Panicum virgatum: centers of diversity and gene pools revealed by SSR markers and cpDNA sequences. Genetica, 139, 933-948.
    • (2011) Genetica , vol.139 , pp. 933-948
    • Zhang, Y.1    Zalapa, J.E.2    Jakubowski, A.R.3    Price, D.L.4    Acharya, A.5    Wei, Y.6    Brummer, E.C.7    Kaeppler, S.M.8    Casler, M.D.9


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.