-
1
-
-
72849144434
-
Sequencing technologies - The next generation
-
Metzker ML (2010) Sequencing technologies - the next generation. Nat Rev Genet 11:31-46.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 31-46
-
-
Metzker, M.L.1
-
2
-
-
18344364097
-
The Orbitrap: A new mass spectrometer
-
DOI 10.1002/jms.856
-
Hu Q, Noll RJ, Li H, Makarov A, Hardman M et al. (2005) The Orbitrap: a new mass spectrometer. J Mass Spectrom 40: 430-443. (Pubitemid 40637866)
-
(2005)
Journal of Mass Spectrometry
, vol.40
, Issue.4
, pp. 430-443
-
-
Hu, Q.1
Noll, R.J.2
Li, H.3
Makarov, A.4
Hardman, M.5
Cooks, R.G.6
-
3
-
-
80052769923
-
Mass spectrometry-based proteomics using q exactive, a high-performance benchtop quadrupole orbitrap mass spectrometer
-
Mill
-
Michalski A, Damoc E, Hauschild JP, Lange O, Wieghaus A et al. (2011) Mass spectrometry-based proteomics using Q Exactive, a high-performance benchtop quadrupole Orbitrap mass spectrometer. Mol Cell Proteomics 10: Mill.
-
(2011)
Mol Cell Proteomics
, vol.10
-
-
Michalski, A.1
Damoc, E.2
Hauschild, J.P.3
Lange, O.4
Wieghaus, A.5
-
4
-
-
22244441812
-
The genome of the African trypanosome Trypanosoma brucei
-
DOI 10.1126/science.1112642
-
Berriman M, Ghedin E, Hertz-Fowler C, Blandin G, Renauld H et al. (2005) The genome of the African trypanosome Trypanosoma brucei. Science 309: 416-422. (Pubitemid 40994676)
-
(2005)
Science
, vol.309
, Issue.5733
, pp. 416-422
-
-
Berriman, M.1
Ghedin, E.2
Hertz-Fowler, C.3
Blandin, G.4
Renauld, H.5
Bartholomeu, D.C.6
Lennard, N.J.7
-
5
-
-
83055168329
-
Whole genome sequencing of multiple leishmania donovani clinical isolates provides insights into population structure and mechanisms of drug resistance
-
Downing T, Imamura H, Decuypere S, Clark TG, Coombs GH et al. (2011) Whole genome sequencing of multiple Leishmania donovani clinical isolates provides insights into population structure and mechanisms of drug resistance. Genome Res 21: 2143-2156.
-
(2011)
Genome Res
, vol.21
, pp. 2143-2156
-
-
Downing, T.1
Imamura, H.2
Decuypere, S.3
Clark, T.G.4
Coombs, G.H.5
-
6
-
-
84858277631
-
Infection: Whole genome sequencing of schistosoma baematobium
-
Fenner A (2012) Infection: Whole genome sequencing of Schistosoma baematobium. Nat Rev Urol 9: 121.
-
(2012)
Nat Rev Urol
, vol.9
, pp. 121
-
-
Fenner, A.1
-
7
-
-
0037015614
-
Genome sequence of the human malaria parasite plasmodium falciparum
-
Gardner MJ, Hall N, Fung E, White O, Berriman M et al. (2002) Genome sequence of the human malaria parasite Plasmodium falciparum. Nature 419: 498-511.
-
(2002)
Nature
, vol.419
, pp. 498-511
-
-
Gardner, M.J.1
Hall, N.2
Fung, E.3
White, O.4
Berriman, M.5
-
8
-
-
77952329013
-
The genome sequence of trypanosoma brucei gambiense, causative agent of chronic human african trypanosomiasis
-
Jackson AP, Sanders M, Berry A, McQuillan J, Aslett MA et al. (2010) The genome sequence of Trypanosoma brucei gambiense, causative agent of chronic human african trypanosomiasis. PLoS Negl Trop Dis 4: e658.
-
(2010)
PLoS Negl Trop Dis
, vol.4
-
-
Jackson, A.P.1
Sanders, M.2
Berry, A.3
McQuillan, J.4
Aslett, M.A.5
-
9
-
-
34347339518
-
Comparative genomic analysis of three Leishmania species that cause diverse human disease
-
DOI 10.1038/ng2053, PII NG2053
-
Peacock CS, Seeger K, Harris D, Murphy L, Ruiz JC et al. (2007) Comparative genomic analysis of three Leishmania species that cause diverse human disease. Nat Genet 39: 839-847. (Pubitemid 47014491)
-
(2007)
Nature Genetics
, vol.39
, Issue.7
, pp. 839-847
-
-
Peacock, C.S.1
Seeger, K.2
Harris, D.3
Murphy, L.4
Ruiz, J.C.5
Quail, M.A.6
Peters, N.7
Adlem, E.8
Tivey, A.9
Aslett, M.10
Kerhornou, A.11
Ivens, A.12
Fraser, A.13
Rajandream, M.-A.14
Carver, T.15
Norbertczak, H.16
Chillingworth, T.17
Hance, Z.18
Jagels, K.19
Moule, S.20
Ormond, D.21
Rutter, S.22
Squares, R.23
Whitehead, S.24
Rabbinowitsch, E.25
Arrowsmith, C.26
White, B.27
Thurston, S.28
Bringaud, F.29
Baldauf, S.L.30
Faulconbridge, A.31
Jeffares, D.32
Depledge, D.P.33
Oyola, S.O.34
Hilley, J.D.35
Brito, L.O.36
Tosi, L.R.O.37
Barrell, B.38
Cruz, A.K.39
Mottram, J.C.40
Smith, D.F.41
Berriman, M.42
more..
-
10
-
-
76249110141
-
Eating at the table of another: Metabolomics of host-parasite interactions
-
Kafsack BF, Llinas M (2010) Eating at the table of another: metabolomics of host-parasite interactions. Cell Host Microbe 7: 90-99.
-
(2010)
Cell Host Microbe
, vol.7
, pp. 90-99
-
-
Kafsack, B.F.1
Llinas, M.2
-
11
-
-
4344670208
-
Metabonomic investigations in mice infected with Schistosoma mansoni: An approach for biomarker identification
-
DOI 10.1073/pnas.0404878101
-
Wang Y, Holmes E, Nicholson JK, Cloarec O, Chollet J et al. (2004) Metabonomic investigations in mice infected with Schistosoma mansoni: an approach for biomarker identification. Proc Natl Acad SciUS A 101: 12676-12681. (Pubitemid 39122082)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.34
, pp. 12676-12681
-
-
Wang, Y.1
Holmes, E.2
Nicholson, J.K.3
Cloarec, O.4
Chollet, J.5
Tanner, M.6
Singer, B.H.7
Utzinger, J.8
-
12
-
-
84883702315
-
Metabolomic systems biology of protozoan parasites
-
In: Suhre K, editors Springer Science + Business Media
-
Breitling R, Bakker BM, Barrett MP, Decuypere S, Dujardin JC (2012) Metabolomic systems biology of protozoan parasites. In: Suhre K, editors.Genetics Meets Metabolomics: from experiment to Systems Biology Springer Science + Business Media 73-84.
-
(2012)
Genetics Meets Metabolomics: From experiment to Systems Biology
, pp. 73-84
-
-
Breitling, R.1
Bakker, B.M.2
Barrett, M.P.3
Decuypere, S.4
Dujardin, J.C.5
-
13
-
-
77957318915
-
The potential of metabolomics for leishmania research in the post-genomics era
-
Scheltema RA, Decuypere S, t'Kindt R, Dujardin JC, Coombs GH et al. (2010) The potential of metabolomics for Leishmania research in the post-genomics era. Parasitology 137: 1291-1302.
-
(2010)
Parasitology
, vol.137
, pp. 1291-1302
-
-
Scheltema, R.A.1
Decuypere, S.2
T'Kindt, R.3
Dujardin, J.C.4
Coombs, G.H.5
-
14
-
-
84861725756
-
Gene expression regulation in trypanosomatids
-
De Gaudenzi JG, Noe G, Campo VA, Frasch AC, Cassola A (2011) Gene expression regulation in trypanosomatids. Essays Biochem 51: 31-46.
-
(2011)
Essays Biochem
, vol.51
, pp. 31-46
-
-
De Gaudenzi, J.G.1
Noe, G.2
Campo, V.A.3
Frasch, A.C.4
Cassola, A.5
-
15
-
-
79959747779
-
Lights and shadows on gene organization and regulation of gene expression in leishmania
-
Requena JM (2011) Lights and shadows on gene organization and regulation of gene expression in Leishmania. Front Biosci 16: 2069-2085.
-
(2011)
Front Biosci
, vol.16
, pp. 2069-2085
-
-
Requena, J.M.1
-
16
-
-
51149093061
-
Molecular crosstalks in leishmania-sandfly-host relationships
-
Volf P, Hostomska J, Rohousova I (2008) Molecular crosstalks in Leishmania-sandfly-host relationships. Parasite 15: 237-243.
-
(2008)
Parasite
, vol.15
, pp. 237-243
-
-
Volf, P.1
Hostomska, J.2
Rohousova, I.3
-
18
-
-
49349112856
-
Redox control in trypanosomatids, parasitic protozoa with trypanothione-based thiol metabolism
-
Krauth-Siegel RL, Comini MA (2008) Redox control in trypanosomatids, parasitic protozoa with trypanothione-based thiol metabolism. Biochim Biophys Acta 1780: 1236-1248.
-
(2008)
Biochim Biophys Acta
, vol.1780
, pp. 1236-1248
-
-
Krauth-Siegel, R.L.1
Comini, M.A.2
-
19
-
-
0038646796
-
Thiol-based redox metabolism of protozoan parasites
-
DOI 10.1016/S1471-4922(03)00141-7
-
Muller S, Liebau E, Walter RD, Krauth-Siegel RL (2003) Thiol-based redox metabolism of protozoan parasites. Trends Parasitol 19: 320-328. (Pubitemid 36829189)
-
(2003)
Trends in Parasitology
, vol.19
, Issue.7
, pp. 320-328
-
-
Muller, S.1
Liebau, E.2
Walter, R.D.3
Krauth-Siegel, R.L.4
-
20
-
-
84899470652
-
Drug-resistant microorganisms with a higher fitness - Can medicines boost pathogens?
-
doi:10.3109/1040841X.2012.716818
-
Vanaerschot M, Decuypere S, Berg M, Roy S, Dujardin JC (2012) Drug-resistant microorganisms with a higher fitness - can medicines boost pathogens? Critical Reviews in Microbiology, doi:10.3109/1040841X.2012.716818
-
(2012)
Critical Reviews in Microbiology
-
-
Vanaerschot, M.1
Decuypere, S.2
Berg, M.3
Roy, S.4
Dujardin, J.C.5
-
21
-
-
22244437571
-
The genome of the kinetoplastid parasite, Leishmania major
-
DOI 10.1126/science.1112680
-
Ivens AC, Peacock CS, Worthey EA, Murphy L, Aggarwal G et al. (2005) The genome of the kinetoplastid parasite, Leishmania major. Science 309: 436-442. (Pubitemid 40994677)
-
(2005)
Science
, vol.309
, Issue.5733
, pp. 436-442
-
-
Ivens, A.C.1
Peacock, C.S.2
Worthey, E.A.3
Murphy, L.4
Aggarwal, G.5
Berriman, M.6
Sisk, E.7
Rajandream, M.-A.8
-
22
-
-
77957751346
-
Transcriptomics throughout the life cycle of leishmania infantum: High down-regulation rate in the amastigote stage
-
Alcolea PJ, Alonso A, Gomez MJ, Moreno I, Dominguez M et al. (2010) Transcriptomics throughout the life cycle of Leishmania infantum: high down-regulation rate in the amastigote stage. Int J Parasitol 40: 1497-1516.
-
(2010)
Int J Parasitol
, vol.40
, pp. 1497-1516
-
-
Alcolea, P.J.1
Alonso, A.2
Gomez, M.J.3
Moreno, I.4
Dominguez, M.5
-
24
-
-
84855272387
-
Metabolic variation during development in culture of leishmania donovani promastigotes
-
Silva AM, Cordeiro-da-Silva A, Coombs GH (2011) Metabolic variation during development in culture of Leishmania donovani promastigotes. PLoS NeglTrop Dis 5: el451.
-
(2011)
PLoS NeglTrop Dis
, vol.5
-
-
Silva, A.M.1
Cordeiro-da-Silva, A.2
Coombs, G.H.3
-
25
-
-
78649776458
-
Metabolomics to unveil and understand phenotypic diversity between pathogen populations
-
t'Kindt R, Scheltema RA, Jankevics A, Brunker K, Rijal S et al. (2010) Metabolomics to unveil and understand phenotypic diversity between pathogen populations. PLoS Negl Trop Dis 4: e904.
-
(2010)
PLoS Negl Trop Dis
, vol.4
-
-
T'Kindt, R.1
Scheltema, R.A.2
Jankevics, A.3
Brunker, K.4
Rijal, S.5
-
26
-
-
13244249953
-
Chemical derivatization and mass spectral libraries in metabolic profiling by GC/MS and LC/MS/MS
-
DOI 10.1093/jxb/eri069, Making Sense of the Metabolome
-
Halket JM, Waterman D, Przyborowska AM, Patel RK, Fraser PD et al. (2005) Chemical derivatization and mass spectral libraries in metabolic profiling by GC/MS and LC/MS/MS. J Exp Bot 56: 219-243. (Pubitemid 40181128)
-
(2005)
Journal of Experimental Botany
, vol.56
, Issue.410
, pp. 219-243
-
-
Halket, J.M.1
Waterman, D.2
Przyborowska, A.M.3
Patel, R.K.P.4
Fraser, P.D.5
Bramley, P.M.6
-
27
-
-
77249175352
-
Knowledge discovery in metabolomics: An overview of ms data handling
-
Boccard J, Veuthey JL, Rudaz S (2010) Knowledge discovery in metabolomics: an overview of MS data handling. J Sep Sci 33: 290-304.
-
(2010)
J Sep Sci
, vol.33
, pp. 290-304
-
-
Boccard, J.1
Veuthey, J.L.2
Rudaz, S.3
-
29
-
-
77957292714
-
Central carbon metabolism of leishmania parasites
-
Saunders EC, DE Souza DP, Naderer T, Sernee MF, Ralton JE et al. (2010) Central carbon metabolism of Leishmania parasites. Parasitology 137: 1303-1313.
-
(2010)
Parasitology
, vol.137
, pp. 1303-1313
-
-
Saunders, E.C.1
Souza, D.E.D.P.2
Naderer, T.3
Sernee, M.F.4
Ralton, J.E.5
-
30
-
-
33745597361
-
Progressive peak clustering in GC-MS Metabolomic experiments applied to Leishmania parasites
-
DOI 10.1093/bioinformatics/btl085
-
De Souza DP, Saunders EC, McConville MJ, Likic VA (2006) Progressive peak clustering in GC-MS Metabolomic experiments applied to Leishmania parasites. Bioinformatics 22: 1391-1396. (Pubitemid 43985276)
-
(2006)
Bioinformatics
, vol.22
, Issue.11
, pp. 1391-1396
-
-
De Souza, D.P.1
Saunders, E.C.2
McConville, M.J.3
Likic, V.A.4
-
31
-
-
79960978737
-
Isotopomer profiling of leishmania mexicana promastigotes reveals important roles for succinate fermentation and aspartate uptake in tricarboxylic acid cycle (tca) anaplerosis, glutamate synthesis, and growth
-
Saunders EC, Ng WW, Chambers JM, Ng M, Naderer T et al. (2011) Isotopomer profiling of Leishmania mexicana promastigotes reveals important roles for succinate fermentation and aspartate uptake in tricarboxylic acid cycle (TCA) anaplerosis, glutamate synthesis, and growth. J Biol Chem 286: 27706-27717.
-
(2011)
J Biol Chem
, vol.286
, pp. 27706-27717
-
-
Saunders, E.C.1
Ng, W.W.2
Chambers, J.M.3
Ng, M.4
Naderer, T.5
-
33
-
-
77954486157
-
Profiling of lipids in leishmania donovani using hydrophilic interaction chromatography in combination with fourier transform mass spectrometry
-
Zheng L, t'Kindt R, Decuypere S, von Freyend SJ, Coombs GH et al. (2010) Profiling of lipids in Leishmania donovani using hydrophilic interaction chromatography in combination with Fourier transform mass spectrometry. Rapid Commun Mass Spectrom 24: 2074-2082.
-
(2010)
Rapid Commun Mass Spectrom
, vol.24
, pp. 2074-2082
-
-
Zheng, L.1
T'Kindt, R.2
Decuypere, S.3
Von Freyend, S.J.4
Coombs, G.H.5
-
34
-
-
79959913950
-
Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry
-
Dunn WB, Broadhurst D, Begley P, Zelena E, Francis-Mclntyre S et al. (2011) Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry. Nat Protoc 6: 1060-1083.
-
(2011)
Nat Protoc
, vol.6
, pp. 1060-1083
-
-
Dunn, W.B.1
Broadhurst, D.2
Begley, P.3
Zelena, E.4
Francis-Mclntyre, S.5
-
35
-
-
38549101978
-
Gene expression profiling of Leishmania (Leishmania) donovani: Overcoming technical variation and exploiting biological variation
-
DOI 10.1017/S0031182007003782, PII S0031182007003782
-
Decuypere S, Vanaerschot M, Rijal S, Yardley V, Maes L et al. (2008) Gene expression profiling of Leishmania (Leishmania) donovani: overcoming technical variation and exploiting biological variation. Parasitology 135: 183-194. (Pubitemid 351156582)
-
(2008)
Parasitology
, vol.135
, Issue.2
, pp. 183-194
-
-
Decuypere, S.1
Vanaerschot, M.2
Rijal, S.3
Yardley, V.4
Maes, L.5
De Doncker, S.6
Chappuis, F.7
Dujardin, J.-C.8
-
36
-
-
84863682324
-
Untargeted metabolomics reveals a lack of synergy between nifurtimox and eflornithine against trypanosoma brucei
-
Vincent IM, Creek DJ, Burgess K, Woods DJ, Burchmore RJ et al. (2012) Untargeted metabolomics reveals a lack of synergy between nifurtimox and eflornithine against Trypanosoma brucei. PLoS Negl Trop Dis 6: el618.
-
(2012)
PLoS Negl Trop Dis
, vol.6
-
-
Vincent, I.M.1
Creek, D.J.2
Burgess, K.3
Woods, D.J.4
Burchmore, R.J.5
-
37
-
-
46749087881
-
Metabolomic profiling using Orbitrap Fourier transform mass spectrometry with hydrophilic interaction chromatography: A method with wide applicability to analysis of biomolecules
-
DOI 10.1002/rcm.3564
-
Kamleh A, Barrett MP, Wildridge D, Burchmore RJ, Scheltema RA et al. (2008) Metabolomic profiling using Orbitrap Fourier transform mass spectrometry with hydrophilic interaction chromatography: a method with wide applicability to analysis of biomolecules. Rapid Commun Mass Spectrom 22: 1912-1918. (Pubitemid 351947757)
-
(2008)
Rapid Communications in Mass Spectrometry
, vol.22
, Issue.12
, pp. 1912-1918
-
-
Kamleh, A.1
Barrett, M.P.2
Wildridge, D.3
Burchmore, R.J.S.4
Scheltema, R.A.5
Watson, D.G.6
-
38
-
-
80054756992
-
Semi-targeted analysis of metabolites using capillary-flow ion chromatography coupled to high-resolution mass spectrometry
-
Burgess K, Creek D, Dewsbury R Cook K, Barrett MP (2011) Semi-targeted analysis of metabolites using capillary-flow ion chromatography coupled to high-resolution mass spectrometry. Rapid Commun Mass Spectrom 25: 3447-3452.
-
(2011)
Rapid Commun Mass Spectrom
, vol.25
, pp. 3447-3452
-
-
Burgess, K.1
Creek, D.2
Dewsbury R Cook, K.3
Barrett, M.P.4
-
39
-
-
78049351897
-
Towards an unbiased metabolic profiling of protozoan parasites: Optimisation of a leishmania sampling protocol for hilic-orbitrap analysis
-
t'Kindt R, Jankevics A, Scheltema RA, Zheng L, Watson DG et al. (2010) Towards an unbiased metabolic profiling of protozoan parasites: optimisation of a Leishmania sampling protocol for HILIC-orbitrap analysis. Anal Bioanal Chem 398: 2059-2069.
-
(2010)
Anal Bioanal Chem
, vol.398
, pp. 2059-2069
-
-
T'Kindt, R.1
Jankevics, A.2
Scheltema, R.A.3
Zheng, L.4
Watson, D.G.5
-
40
-
-
84856213382
-
Identification of phospholipid species affected by miltefosine action in leishmania donovani cultures using lc-elsd, lc-esi/ms, and multivariate data analysis
-
Imbert L, Ramos RG, Libong D, Abreu S, Loiseau PM et al. (2012) Identification of phospholipid species affected by miltefosine action in Leishmania donovani cultures using LC-ELSD, LC-ESI/MS, and multivariate data analysis. Anal Bioanal Chem 402: 1169-1182.
-
(2012)
Anal Bioanal Chem
, vol.402
, pp. 1169-1182
-
-
Imbert, L.1
Ramos, R.G.2
Libong, D.3
Abreu, S.4
Loiseau, P.M.5
-
41
-
-
41849111818
-
A gc-tof-ms study of the stability of serum and urine metabolomes during the uk biobank sample collection and preparation protocols
-
Dunn WB, Broadhurst D, Ellis DI, Brown M, Halsall A et al. (2008) A GC-TOF-MS study of the stability of serum and urine metabolomes during the UK Biobank sample collection and preparation protocols. Int J Epidemiol 37 Suppl 1: i23-i30.
-
(2008)
Int J Epidemiol 37 Suppl
, vol.1
-
-
Dunn, W.B.1
Broadhurst, D.2
Ellis, D.I.3
Brown, M.4
Halsall, A.5
-
42
-
-
34548146614
-
Within-day reproducibility of an HPLC-MS-based method for metabonomic analysis: Application to human urine
-
DOI 10.1021/pr070183p
-
Gika HG, Theodoridis GA, Wingate JE, Wilson ID (2007) Within-day reproducibility of an HPLC-MS-based method for metabonomic analysis: application to human urine. J Proteome Res 6: 3291-3303. (Pubitemid 47310213)
-
(2007)
Journal of Proteome Research
, vol.6
, Issue.8
, pp. 3291-3303
-
-
Gika, H.G.1
Theodoridis, G.A.2
Wingate, J.E.3
Wilson, I.D.4
-
43
-
-
82755162446
-
The impact of delayed storage on the measured proteome and metabolome of human cerebrospinal fluid
-
Rosenling T, Stoop MP, Smolinska A, Muilwijk B, Coulier L et al. (2011) The impact of delayed storage on the measured proteome and metabolome of human cerebrospinal fluid. Clin Chem 57: 1703-1711.
-
(2011)
Clin Chem
, vol.57
, pp. 1703-1711
-
-
Rosenling, T.1
Stoop, M.P.2
Smolinska, A.3
Muilwijk, B.4
Coulier, L.5
-
44
-
-
81255144050
-
Toward global metabolomics analysis with hydrophilic interaction liquid chromatography-mass spectrometry: Improved metabolite identification by retention time prediction
-
Creek DJ, Jankevics A, Breitling R, Watson DG, Barrett MP et al. (2011) Toward global metabolomics analysis with hydrophilic interaction liquid chromatography-mass spectrometry: improved metabolite identification by retention time prediction. Anal Chem 83: 8703-8710.
-
(2011)
Anal Chem
, vol.83
, pp. 8703-8710
-
-
Creek, D.J.1
Jankevics, A.2
Breitling, R.3
Watson, D.G.4
Barrett, M.P.5
-
45
-
-
82955187025
-
Metabolomic analysis of a synthetic metabolic switch in streptomyces coelicolorki(2)
-
Jankevics A, Merlo ME, de VM, Vonk RJ, Takano E et al. (2011) Metabolomic analysis of a synthetic metabolic switch in Streptomyces coelicolorKi(2). Proteomics 11: 4622-4631.
-
(2011)
Proteomics
, vol.11
, pp. 4622-4631
-
-
Jankevics, A.1
Merlo, M.E.2
De, V.M.3
Vonk, R.J.4
Takano, E.5
-
46
-
-
48949103703
-
Evaluation of the repeatability of ultra-performance liquid chromatography-tof-ms for global metabolic profiling of human urine samples
-
Gika HG, Macpherson E, Theodoridis GA, Wilson ID (2008) Evaluation of the repeatability of ultra-performance liquid chromatography-TOF-MS for global metabolic profiling of human urine samples. J Chromatogr B Analyt Technol Biomed Life Sci 871: 299-305.
-
(2008)
J Chromatogr B Analyt Technol Biomed Life Sci
, vol.871
, pp. 299-305
-
-
Gika, H.G.1
Macpherson, E.2
Theodoridis, G.A.3
Wilson, I.D.4
-
47
-
-
84860361428
-
Separating the wheat from the chaff: A prioritisation pipeline for the analysis of metabolomics datasets
-
Jankevics A, Merlo ME, de VM, Vonk RJ, Takano E et al. (2012) Separating the wheat from the chaff: a prioritisation pipeline for the analysis of metabolomics datasets. Metabolomics 8: 29-36.
-
(2012)
Metabolomics
, vol.8
, pp. 29-36
-
-
Jankevics, A.1
Merlo, M.E.2
De, V.M.3
Vonk, R.J.4
Takano, E.5
-
48
-
-
33749074122
-
A pragmatic and readily implemented quality control strategy for HPLC-MS and GC-MS-based metabonomic analysis
-
DOI 10.1039/b604498k
-
Sangster T, Major H, Plumb R, Wilson AJ, Wilson ID (2006) A pragmatic and readily implemented quality control strategy for HPLC-MS and GC-MS-based metabonomic analysis. Analyst 131: 1075-1078. (Pubitemid 44465534)
-
(2006)
Analyst
, vol.131
, Issue.10
, pp. 1075-1078
-
-
Sangster, T.1
Major, H.2
Plumb, R.3
Wilson, A.J.4
Wilson, I.D.5
-
49
-
-
77957323123
-
The potential of mass spectrometry for the global profiling of parasite metabolomes
-
Watson DG (2010) The potential of mass spectrometry for the global profiling of parasite metabolomes. Parasitology 137: 1409-1423.
-
(2010)
Parasitology
, vol.137
, pp. 1409-1423
-
-
Watson, D.G.1
-
50
-
-
79953010953
-
What are the obstacles for an integrated system for comprehensive interpretation of cross-platform metabolic profile data?
-
Kind T, Fiehn O (2009) What are the obstacles for an integrated system for comprehensive interpretation of cross-platform metabolic profile data? Bioanalysis 1: 1511-1514.
-
(2009)
Bioanalysis
, vol.1
, pp. 1511-1514
-
-
Kind, T.1
Fiehn, O.2
-
51
-
-
60649089559
-
Highly sensitive feature detection for high resolution lc/ms
-
Tautenhahn R, Bottcher C, Neumann S (2008) Highly sensitive feature detection for high resolution LC/MS. BMC Bioinformatics 9: 504.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 504
-
-
Tautenhahn, R.1
Bottcher, C.2
Neumann, S.3
-
52
-
-
19344372094
-
The use of the Durbin-Watson criterion for noise and background reduction of complex liquid chromatography/mass spectrometry data and a new algorithm to determine sample differences
-
DOI 10.1016/j.chemolab.2004.10.008, PII S0169743904002643
-
Windig W (2004) The use of the Durbin-Watson criterion for noise and background reduction of complex liquid chromatography/mass spectrometry data and a new algorithm to determine sample differences. Chemometrics and Intelligent Laboratory Systems 77: 206-214. (Pubitemid 40720105)
-
(2005)
Chemometrics and Intelligent Laboratory Systems
, vol.77
, Issue.1-2 SPEC. ISS.
, pp. 206-214
-
-
Windig, W.1
-
53
-
-
84855402302
-
Camera: An integrated strategy for compound spectra extraction and annotation of liquid chromatography/mass spectrometry data sets
-
Kuhl C, Tautenhahn R, Bottcher C, Larson TR, Neumann S (2012) CAMERA: an integrated strategy for compound spectra extraction and annotation of liquid chromatography/mass spectrometry data sets. Anal Chem 84: 283-289.
-
(2012)
Anal Chem
, vol.84
, pp. 283-289
-
-
Kuhl, C.1
Tautenhahn, R.2
Bottcher, C.3
Larson, T.R.4
Neumann, S.5
-
54
-
-
79954519624
-
Automated workflows for accurate mass-based putative metabolite identification in lc/ms-derived metabolomic datasets
-
Brown M, Wedge DC, Goodacre R, Kell DB, Baker PN et al. (2011) Automated workflows for accurate mass-based putative metabolite identification in LC/MS-derived metabolomic datasets. Bioinformatics 27: 1108-1112.
-
(2011)
Bioinformatics
, vol.27
, pp. 1108-1112
-
-
Brown, M.1
Wedge, D.C.2
Goodacre, R.3
Kell, D.B.4
Baker, P.N.5
-
55
-
-
79953267955
-
Peakml/mzmatch: A file format, java library, r library, and tool-chain for mass spectrometry data analysis
-
Scheltema RA, Jankevics A, Jansen RC, Swertz MA, Breitling R (2011) PeakML/mzMatch: a file format, Java library, R library, and tool-chain for mass spectrometry data analysis. Anal Chem 83: 2786-2793.
-
(2011)
Anal Chem
, vol.83
, pp. 2786-2793
-
-
Scheltema, R.A.1
Jankevics, A.2
Jansen, R.C.3
Swertz, M.A.4
Breitling, R.5
-
56
-
-
77952302069
-
In silico fragmentation for computer assisted identification of metabolite mass spectra
-
Wolf S, Schmidt S, Muller-Hannemann M, Neumann S (2010) In silico fragmentation for computer assisted identification of metabolite mass spectra. BMC Bioinformatics 11: 148.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 148
-
-
Wolf, S.1
Schmidt, S.2
Muller-Hannemann, M.3
Neumann, S.4
-
57
-
-
32444446805
-
XCMS: Processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification
-
DOI 10.1021/ac051437y
-
Smith CA, Want EJ, O'Maille G, Abagyan R, Siuzdak G (2006) XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification. Anal Chem 78: 779-787. (Pubitemid 43228585)
-
(2006)
Analytical Chemistry
, vol.78
, Issue.3
, pp. 779-787
-
-
Smith, C.A.1
Want, E.J.2
O'Maille, G.3
Abagyan, R.4
Siuzdak, G.5
-
58
-
-
77954772536
-
Mzmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data
-
Pluskal T, Castillo S, Villar-Briones A, Oresic M (2010) MZmine 2: modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data. BMC Bioinformatics 11: 395.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 395
-
-
Pluskal, T.1
Castillo, S.2
Villar-Briones, A.3
Oresic, M.4
-
59
-
-
84859223223
-
Ideom: An excel interface for analysis of lc-ms-based metabolomics data
-
Creek DJ, Jankevics A, Burgess KE, Breitling R, Barrett MP (2012) IDEOM: an Excel interface for analysis of LC-MS-based metabolomics data. Bioinformatics 28: 1048-1049.
-
(2012)
Bioinformatics
, vol.28
, pp. 1048-1049
-
-
Creek, D.J.1
Jankevics, A.2
Burgess, K.E.3
Breitling, R.4
Barrett, M.P.5
-
60
-
-
84869425686
-
Stable isotope-assisted metabolomics for network-wide metabolic pathway elucidation
-
doi: 10.1021/ac3018795
-
Creek DJ, Chokkathukalam A, Jankevics A, Burgess K, Breitling R et al. (2012) Stable isotope-assisted metabolomics for network-wide metabolic pathway elucidation. Anal Chem, doi: 10.1021/ac3018795
-
(2012)
Anal Chem
-
-
Creek, D.J.1
Chokkathukalam, A.2
Jankevics, A.3
Burgess, K.4
Breitling, R.5
-
61
-
-
78649695759
-
Metabolomic analysis and visualization engine for lc-ms data
-
Melamud E, Vastag L, Rabinowitz JD (2010) Metabolomic analysis and visualization engine for LC-MS data. Anal Chem 82: 9818-9826.
-
(2010)
Anal Chem
, vol.82
, pp. 9818-9826
-
-
Melamud, E.1
Vastag, L.2
Rabinowitz, J.D.3
-
62
-
-
63649128102
-
Development of a robust and repeatable uplc-ms method for the long-term metabolomic study of human serum
-
Zelena E, Dunn WB, Broadhurst D, Francis-Mclntyre S, Carroll KM et al. (2009) Development of a robust and repeatable UPLC-MS method for the long-term metabolomic study of human serum. Anal Chem 81: 1357-1364.
-
(2009)
Anal Chem
, vol.81
, pp. 1357-1364
-
-
Zelena, E.1
Dunn, W.B.2
Broadhurst, D.3
Francis-Mclntyre, S.4
Carroll, K.M.5
-
63
-
-
33748490271
-
Chromatographic alignment of ESI-LC-MS proteomics data sets by ordered bijective interpolated warping
-
DOI 10.1021/ac0605344
-
Prince JT, Marcotte EM (2006) Chromatographic alignment of ESI-LC-MS proteomics data sets by ordered bijective interpolated warping. Anal Chem 78: 6140-6152. (Pubitemid 44360127)
-
(2006)
Analytical Chemistry
, vol.78
, Issue.17
, pp. 6140-6152
-
-
Prince, J.T.1
Marcotte, E.M.2
-
64
-
-
25444526868
-
Processing methods for differential analysis of lc/ms profile data
-
Katajamaa M, Oresic M (2005) Processing methods for differential analysis of LC/MS profile data. BMC Bioinformatics 6: 179.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 179
-
-
Katajamaa, M.1
Oresic, M.2
-
65
-
-
84860359421
-
State-of-the art data normalisation methods improve nmr-based metabolomic analysis
-
Kohl SM, Klein MS, Hochrein J, Oefner PJ, Spang R, Gronwald W (2011) State-of-the-art data normalisation methods improve NMR-based metabolomic analysis. Metabolomics 8: 146-160.
-
(2011)
Metabolomics
, vol.8
, pp. 146-160
-
-
Kohl, S.M.1
Klein, M.S.2
Hochrein, J.3
Oefner, P.J.4
Spang, R.5
Gronwald, W.6
-
66
-
-
68449099540
-
From isolation to integration, a systems biology approach for building the silicon cell
-
In: Alberghina L and Westerhoff, H. V., editors. Springer-Verlag
-
Snoep JL, Westerhoff HV (2005) From isolation to integration, a systems biology approach for building the Silicon Cell. In: Alberghina L and Westerhoff, H. V., editors.Systems Biology: Definitions and Perspectives. Topics in Current Genetics. Springer-Verlag 13-30.
-
(2005)
Systems Biology: Definitions and Perspectives. Topics in Current Genetics
, pp. 13-30
-
-
Snoep, J.L.1
Westerhoff, H.V.2
-
67
-
-
84862992009
-
Ce-esi-ms metabolic fingerprinting of leishmania resistance to antimony treatment
-
Canuto GA, Castilho-Martins EA, Tavares M, Lopez-Gonzalvez A, Rivas L et al. (2012) CE-ESI-MS metabolic fingerprinting of Leishmania resistance to antimony treatment. Electrophoresis 33: 1901-1910.
-
(2012)
Electrophoresis
, vol.33
, pp. 1901-1910
-
-
Canuto, G.A.1
Castilho-Martins, E.A.2
Tavares, M.3
Lopez-Gonzalvez, A.4
Rivas, L.5
|