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Volumn 135, Issue 2, 2008, Pages 183-194

Gene expression profiling of Leishmania (Leishmania) donovani: Overcoming technical variation and exploiting biological variation

Author keywords

Comparative expression profiling isolates; Leishmania (Leishmania) donovani; Standardization; Variation gene expression

Indexed keywords

AMASTIGOTE; ANIMAL CELL; ARTICLE; CELL DIFFERENTIATION; ENVIRONMENTAL FACTOR; GENE EXPRESSION PROFILING; GENE FUNCTION; GENETIC VARIABILITY; INTERMETHOD COMPARISON; LEISHMANIA DONOVANI; METHODOLOGY; MOUSE; NONHUMAN; PARASITE DEVELOPMENT; PARASITE ISOLATION; PRIORITY JOURNAL; PROMASTIGOTE; PROTOZOAL GENETICS;

EID: 38549101978     PISSN: 00311820     EISSN: 14698161     Source Type: Journal    
DOI: 10.1017/S0031182007003782     Document Type: Article
Times cited : (21)

References (39)
  • 1
    • 2342467942 scopus 로고    scopus 로고
    • Expression profiling using random genomic DNA microarrays identifies differentially expressed genes associated with three major developmental stages of the protozoan parasite Leishmania major
    • Akopyants, N. S., Matlib, R. S., Bukanova, E. N., Smeds, M. R., Brownstein, B. H., Stormo, G. D. and Beverley, S. M. (2004). Expression profiling using random genomic DNA microarrays identifies differentially expressed genes associated with three major developmental stages of the protozoan parasite Leishmania major. Molecular and Biochemical Parasitology 136, 71-86.
    • (2004) Molecular and Biochemical Parasitology , vol.136 , pp. 71-86
    • Akopyants, N.S.1    Matlib, R.S.2    Bukanova, E.N.3    Smeds, M.R.4    Brownstein, B.H.5    Stormo, G.D.6    Beverley, S.M.7
  • 4
    • 0027175178 scopus 로고
    • Leishmania mexicana: Induction of metacyclogenesis by cultivation of promastigotes at acidic pH
    • Bates, P. A. and Tetley, L. (1993). Leishmania mexicana: induction of metacyclogenesis by cultivation of promastigotes at acidic pH. Experimental Parasitology 76, 412-423.
    • (1993) Experimental Parasitology , vol.76 , pp. 412-423
    • Bates, P.A.1    Tetley, L.2
  • 5
    • 21044454794 scopus 로고    scopus 로고
    • Aquaporins from pathogenic protozoan parasites: Structure, function and potential for chemotherapy
    • Beitz, E. (2005). Aquaporins from pathogenic protozoan parasites: structure, function and potential for chemotherapy. Biology of the Cell 97, 373-383.
    • (2005) Biology of the Cell , vol.97 , pp. 373-383
    • Beitz, E.1
  • 6
    • 0037205486 scopus 로고    scopus 로고
    • A common mechanism of stage-regulated gene expression in Leishmania mediated by a conserved 3′-untranslated region element
    • Boucher, N., Wu, Y., Dumas, C., Dube, M., Sereno, D., Breton, M. and Papadopoulou, B. (2002). A common mechanism of stage-regulated gene expression in Leishmania mediated by a conserved 3′-untranslated region element. The Journal of Biological Chemistry 277, 19511-19520.
    • (2002) The Journal of Biological Chemistry , vol.277 , pp. 19511-19520
    • Boucher, N.1    Wu, Y.2    Dumas, C.3    Dube, M.4    Sereno, D.5    Breton, M.6    Papadopoulou, B.7
  • 7
    • 0242402131 scopus 로고    scopus 로고
    • Transcription in kinetoplastid protozoa: Why be normal?
    • Campbell, D. A., Thomas, S. and Sturm, N. R. (2003). Transcription in kinetoplastid protozoa: why be normal? Microbes and Infection 5, 1231-1240.
    • (2003) Microbes and Infection , vol.5 , pp. 1231-1240
    • Campbell, D.A.1    Thomas, S.2    Sturm, N.R.3
  • 8
    • 0038342438 scopus 로고    scopus 로고
    • Unique gene expression profiles of human macrophages and dendritic cells to phylogenetically distinct parasites
    • Chaussabel, D., Semnani, R. T., McDowell, M. A., Sacks, D., Sher, A. and Nutman, T. B. (2003). Unique gene expression profiles of human macrophages and dendritic cells to phylogenetically distinct parasites. Blood 102, 672-681.
    • (2003) Blood , vol.102 , pp. 672-681
    • Chaussabel, D.1    Semnani, R.T.2    McDowell, M.A.3    Sacks, D.4    Sher, A.5    Nutman, T.B.6
  • 9
    • 0037090528 scopus 로고    scopus 로고
    • Life without transcriptional control? From fly to man and back again
    • Clayton, C. E. (2002). Life without transcriptional control? From fly to man and back again. The EMBO Journal 21, 1881-1888.
    • (2002) The EMBO Journal , vol.21 , pp. 1881-1888
    • Clayton, C.E.1
  • 12
    • 1942423554 scopus 로고    scopus 로고
    • DNA microarray analysis of protozoan parasite gene expression: Outcomes correlate with mechanisms of regulation
    • Duncan, R. (2004). DNA microarray analysis of protozoan parasite gene expression: outcomes correlate with mechanisms of regulation. Trends in Parasitology 20, 211-215.
    • (2004) Trends in Parasitology , vol.20 , pp. 211-215
    • Duncan, R.1
  • 15
    • 0019838151 scopus 로고
    • Tubulin biosynthesis in the developmental cycle of a parasitic protozoan, Leishmania mexicana: Changes during differentiation of motile and nonmotile stages
    • Fong, D. and Chang, K. P. (1981). Tubulin biosynthesis in the developmental cycle of a parasitic protozoan, Leishmania mexicana: changes during differentiation of motile and nonmotile stages. Proceedings of the National Academy of Sciences, USA 78, 7624-7628.
    • (1981) Proceedings of the National Academy of Sciences, USA , vol.78 , pp. 7624-7628
    • Fong, D.1    Chang, K.P.2
  • 16
    • 0019518610 scopus 로고
    • A quick, simple method for purifying Leishmania mexicana amastigotes in large numbers
    • Hart, D. T., Vickerman, K. and Coombs, G. H. (1981). A quick, simple method for purifying Leishmania mexicana amastigotes in large numbers. Parasitology 82, 345-355.
    • (1981) Parasitology , vol.82 , pp. 345-355
    • Hart, D.T.1    Vickerman, K.2    Coombs, G.H.3
  • 18
    • 45449087921 scopus 로고    scopus 로고
    • qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data
    • Hellemans, J., Mortier, G., De Paepe, A., Speleman, F. and Vandesompele, J. (2007). qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data. Genome Biology 8, R19.
    • (2007) Genome Biology , vol.8
    • Hellemans, J.1    Mortier, G.2    De Paepe, A.3    Speleman, F.4    Vandesompele, J.5
  • 19
    • 33644828887 scopus 로고    scopus 로고
    • Expression profiling by whole-genome interspecies microarray hybridization reveals differential gene expression in procyclic promastigotes, lesion-derived amastigotes, and axenic amastigotes in Leishmania mexicana
    • Holzer, T. R., McMaster, W. R. and Forney, J. D. (2006). Expression profiling by whole-genome interspecies microarray hybridization reveals differential gene expression in procyclic promastigotes, lesion-derived amastigotes, and axenic amastigotes in Leishmania mexicana. Molecular and Biochemical Parasitology 146, 198-218.
    • (2006) Molecular and Biochemical Parasitology , vol.146 , pp. 198-218
    • Holzer, T.R.1    McMaster, W.R.2    Forney, J.D.3
  • 20
    • 26244433294 scopus 로고    scopus 로고
    • Transcriptional response of Candida albicans to nitric oxide and the role of the YHB1 gene in nitrosative stress and virulence
    • Hromatka, B. S., Noble, S. M. and Johnson, A. D. (2005). Transcriptional response of Candida albicans to nitric oxide and the role of the YHB1 gene in nitrosative stress and virulence. Molecular Biology of the Cell 16, 4814-4826.
    • (2005) Molecular Biology of the Cell , vol.16 , pp. 4814-4826
    • Hromatka, B.S.1    Noble, S.M.2    Johnson, A.D.3
  • 23
    • 6344234341 scopus 로고    scopus 로고
    • Transcription initiation and termination on Leishmania major chromosome 3
    • Martinez-Calvillo, S., Nguyen, D., Stuart, K. and Myler, P. J. (2004). Transcription initiation and termination on Leishmania major chromosome 3. Eukaryotic Cell 3, 506-517.
    • (2004) Eukaryotic Cell , vol.3 , pp. 506-517
    • Martinez-Calvillo, S.1    Nguyen, D.2    Stuart, K.3    Myler, P.J.4
  • 24
    • 31344439714 scopus 로고    scopus 로고
    • Overexpression of genes of the cell wall stimulon in clinical isolates of Staphylococcus aureus exhibiting vancomycin-intermediate-S. aureus-type resistance to vancomycin
    • McAleese, F., Wu, S. W., Sieradzki, K., Dunman, P., Murphy, E., Projan, S. and Tomasz, A. (2006). Overexpression of genes of the cell wall stimulon in clinical isolates of Staphylococcus aureus exhibiting vancomycin-intermediate-S. aureus-type resistance to vancomycin. Journal of Bacteriology 188, 1120-1133.
    • (2006) Journal of Bacteriology , vol.188 , pp. 1120-1133
    • McAleese, F.1    Wu, S.W.2    Sieradzki, K.3    Dunman, P.4    Murphy, E.5    Projan, S.6    Tomasz, A.7
  • 25
    • 33745725868 scopus 로고    scopus 로고
    • A combined proteomic and transcriptomic approach to the study of stage differentiation in Leishmania infantum
    • McNicoll, F., Drummelsmith, J., Muller, M., Madore, E., Boilard, N., Ouellette, M. and Papadopoulou, B. (2006). A combined proteomic and transcriptomic approach to the study of stage differentiation in Leishmania infantum. Proteomics 6, 3567-3581.
    • (2006) Proteomics , vol.6 , pp. 3567-3581
    • McNicoll, F.1    Drummelsmith, J.2    Muller, M.3    Madore, E.4    Boilard, N.5    Ouellette, M.6    Papadopoulou, B.7
  • 27
    • 0026708826 scopus 로고
    • A developmentally regulated cysteine proteinase gene of Leishmania mexicana
    • Mottram, J. C., Robertson, C. D., Coombs, G. H. and Barry, J. D. (1992). A developmentally regulated cysteine proteinase gene of Leishmania mexicana. Molecular Microbiology 6, 1925-1932.
    • (1992) Molecular Microbiology , vol.6 , pp. 1925-1932
    • Mottram, J.C.1    Robertson, C.D.2    Coombs, G.H.3    Barry, J.D.4
  • 29
    • 0023625566 scopus 로고
    • Studies on intracellular killing of Leishmania major and lysis of host macrophages by immune lymphoid cells in vitro
    • Pham, T. V. and Mauel, J. (1987). Studies on intracellular killing of Leishmania major and lysis of host macrophages by immune lymphoid cells in vitro. Parasite Immunology 9, 721-736.
    • (1987) Parasite Immunology , vol.9 , pp. 721-736
    • Pham, T.V.1    Mauel, J.2
  • 31
    • 0024390249 scopus 로고
    • Metacyclogenesis in Leishmania promastigotes
    • Sacks, D. L. (1989). Metacyclogenesis in Leishmania promastigotes. Experimental Parasitology 69, 100-103.
    • (1989) Experimental Parasitology , vol.69 , pp. 100-103
    • Sacks, D.L.1
  • 32
    • 33846259286 scopus 로고    scopus 로고
    • Analysis of the Leishmania donovani transcriptome reveals an ordered progression of transient and permanent changes in gene expression during differentiation
    • Saxena, A., Lahav, T., Holland, N., Aggarwal, G., Anupama, A., Huang, Y., Volpin, H., Myler, P. J. and Zilberstein, D. (2007). Analysis of the Leishmania donovani transcriptome reveals an ordered progression of transient and permanent changes in gene expression during differentiation. Molecular and Biochemical Parasitology 152, 53-65.
    • (2007) Molecular and Biochemical Parasitology , vol.152 , pp. 53-65
    • Saxena, A.1    Lahav, T.2    Holland, N.3    Aggarwal, G.4    Anupama, A.5    Huang, Y.6    Volpin, H.7    Myler, P.J.8    Zilberstein, D.9
  • 33
    • 0037836064 scopus 로고    scopus 로고
    • Evaluation of differential gene expression in Leishmania major Friedlin procyclics and metacyclics using DNA microarray analysis
    • Saxena, A., Worthey, E. A., Yan, S., Leland, A., Stuart, K. D. and Myler, P. J. (2003). Evaluation of differential gene expression in Leishmania major Friedlin procyclics and metacyclics using DNA microarray analysis. Molecular and Biochemical Parasitology 129, 103-114.
    • (2003) Molecular and Biochemical Parasitology , vol.129 , pp. 103-114
    • Saxena, A.1    Worthey, E.A.2    Yan, S.3    Leland, A.4    Stuart, K.D.5    Myler, P.J.6
  • 34
    • 0028806048 scopus 로고
    • Quantitative monitoring of gene expression patterns with a complementary DNA microarray
    • Schena, M., Shalon, D., Davis, R. W. and Brown, P. O. (1995). Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270, 467-470.
    • (1995) Science , vol.270 , pp. 467-470
    • Schena, M.1    Shalon, D.2    Davis, R.W.3    Brown, P.O.4
  • 35
    • 0024078139 scopus 로고
    • Temperature effects on molecular processes which lead to stage differentiation in Leishmania
    • Shapira, M., McEwen, J. G. and Jaffe, C. L. (1988). Temperature effects on molecular processes which lead to stage differentiation in Leishmania. The EMBO Journal 7, 2895-2901.
    • (1988) The EMBO Journal , vol.7 , pp. 2895-2901
    • Shapira, M.1    McEwen, J.G.2    Jaffe, C.L.3
  • 36
    • 1642263324 scopus 로고    scopus 로고
    • Antigen genes for molecular epidemiology of leishmaniasis: Polymorphism of cysteine proteinase B and surface metalloprotease glycoprotein 63 in the Leishmania donovani complex
    • Tintaya, K. W., Ying, X., Dedet, J. P., Rijal, S., De Bolle, X. and Dujardin, J. C. (2004). Antigen genes for molecular epidemiology of leishmaniasis: polymorphism of cysteine proteinase B and surface metalloprotease glycoprotein 63 in the Leishmania donovani complex. The Journal of Infectious Diseases 189, 1035-1043.
    • (2004) The Journal of Infectious Diseases , vol.189 , pp. 1035-1043
    • Tintaya, K.W.1    Ying, X.2    Dedet, J.P.3    Rijal, S.4    De Bolle, X.5    Dujardin, J.C.6
  • 37
    • 0002976965 scopus 로고
    • Cultural and physiological observations on Trypanosoma rhodesiense and Trypanosoma gambiense
    • Tobie, E. J., Von Brand, T. and Mehlman, B. (1950). Cultural and physiological observations on Trypanosoma rhodesiense and Trypanosoma gambiense. Journal of Parasitology 36, 48-54.
    • (1950) Journal of Parasitology , vol.36 , pp. 48-54
    • Tobie, E.J.1    Von Brand, T.2    Mehlman, B.3
  • 38
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • research
    • Vandesompele, J., De Preter, K., Pattyn, F., Poppe, B., Van Roy, N., De Paepe, A. and Speleman, F. (2002). Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biology 3, research 0034.1-0034.11.
    • (2002) Genome Biology , vol.3
    • Vandesompele, J.1    De Preter, K.2    Pattyn, F.3    Poppe, B.4    Van Roy, N.5    De Paepe, A.6    Speleman, F.7
  • 39
    • 0031902841 scopus 로고    scopus 로고
    • Zakai, H. A., Chance, M. L. and Bates, P. A. (1998). In vitro stimulation of metacyclogenesis in Leishmania braziliensis, L. donovani, L. major and L. mexicana. Parasitology 116, 305-309.
    • Zakai, H. A., Chance, M. L. and Bates, P. A. (1998). In vitro stimulation of metacyclogenesis in Leishmania braziliensis, L. donovani, L. major and L. mexicana. Parasitology 116, 305-309.


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