-
2
-
-
11144254100
-
Quantifying reproducibility for differential proteomics: Noise analysis for protein liquid chromatography-mass spectrometry of human serum
-
Anderle, M., Roy, S., Lin, H., Becker, C., & Joho, K. (2011). Quantifying reproducibility for differential proteomics: Noise analysis for protein liquid chromatography-mass spectrometry of human serum. Bioinformatics, 20, 3575-3582.
-
(2011)
Bioinformatics
, vol.20
, pp. 3575-3582
-
-
Anderle, M.1
Roy, S.2
Lin, H.3
Becker, C.4
Joho, K.5
-
3
-
-
0037225727
-
Contrast normalization of oligonucleotide arrays
-
Astrand, M. (2003). Contrast normalization of oligonucleotide arrays. Journal of Computational Biology, 10, 95-102.
-
(2003)
Journal of Computational Biology
, vol.10
, pp. 95-102
-
-
Astrand, M.1
-
4
-
-
0037316303
-
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
-
Bolstad, B. M., Irizarry, R. A., Astrand, M., & Speed, T. P. (2003). A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics, 19, 185-193.
-
(2003)
Bioinformatics
, vol.19
, pp. 185-193
-
-
Bolstad, B.M.1
Irizarry, R.A.2
Astrand, M.3
Speed, T.P.4
-
5
-
-
41949108590
-
Metabolic profiling as a tool for understanding mechanisms of toxicity
-
Clarke, C. J., & Haselden, J. N. (2008). Metabolic profiling as a tool for understanding mechanisms of toxicity. Toxicologic Pathology, 36, 140-147.
-
(2008)
Toxicologic Pathology
, vol.36
, pp. 140-147
-
-
Clarke, C.J.1
Haselden, J.N.2
-
6
-
-
84947318637
-
Locally weighted regression-An approach to regression-analysis by local fitting
-
Cleveland, W. S., & Devlin, S. J. (1988). Locally weighted regression-An approach to regression-analysis by local fitting. Journal of the American Statistical Association, 83, 596-610.
-
(1988)
Journal of the American Statistical Association
, vol.83
, pp. 596-610
-
-
Cleveland, W.S.1
Devlin, S.J.2
-
7
-
-
20044366919
-
1H NMR data sets
-
1H NMR data sets. Analytical Chemistry, 77, 1282-1289.
-
(2005)
Analytical Chemistry
, vol.77
, pp. 1282-1289
-
-
Cloarec, O.1
Dumas, M.-E.2
Craig, A.3
Barton, R.4
Trygg, J.5
Hudson, J.6
-
8
-
-
12244293657
-
1H NMR spectroscopic metabonomic studies
-
1H NMR spectroscopic metabonomic studies. Analytical Chemistry, 77, 517-526.
-
(2005)
Analytical Chemistry
, vol.77
, pp. 517-526
-
-
Cloarec, O.1
Dumas, M.E.2
Trygg, J.3
Craig, A.4
Barton, R.H.5
Lindon, J.C.6
-
9
-
-
77957839768
-
1H-NMR spectra
-
1H-NMR spectra. Analytical and Bioanalytical Chemistry, 398, 1781-1790.
-
(2010)
Analytical and Bioanalytical Chemistry
, vol.398
, pp. 1781-1790
-
-
de Meyer, T.1
Sinnaeve, D.2
van Gasse, B.3
Rietzschel, E.-R.4
de Buyzere, M.L.5
Langlois, M.R.6
-
11
-
-
79952200874
-
NMR and MS methods for metabolomics
-
Dieterle, F., Riefke, B., Schlotterbeck, G., Ross, A., Senn, H., & Amberg, A. (2011). NMR and MS methods for metabolomics. Methods in Molecular Biology, 691, 385-415.
-
(2011)
Methods in Molecular Biology
, vol.691
, pp. 385-415
-
-
Dieterle, F.1
Riefke, B.2
Schlotterbeck, G.3
Ross, A.4
Senn, H.5
Amberg, A.6
-
13
-
-
0036376993
-
Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments
-
Dudoit, S., Yang, Y. H., Callow, M. J., & Speed, T. P. (2002). Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments. Statistica Sinica, 12, 111-139.
-
(2002)
Statistica Sinica
, vol.12
, pp. 111-139
-
-
Dudoit, S.1
Yang, Y.H.2
Callow, M.J.3
Speed, T.P.4
-
14
-
-
0012572299
-
A variance stabilizing transformation for gene-expression microarray data
-
Durbin, B. P., Hardin, J. S., Hawkins, D. M., & Rocke, D. M. (2002). A variance stabilizing transformation for gene-expression microarray data. Bioinformatics, 18 suppl. 1, S105-S110.
-
(2002)
Bioinformatics
, vol.18
, Issue.SUPPL. 1
-
-
Durbin, B.P.1
Hardin, J.S.2
Hawkins, D.M.3
Rocke, D.M.4
-
15
-
-
9944247186
-
Using chemometrics for navigating in the large data sets of genomics, proteomics, and metabonomics (gpm)
-
Eriksson, L., Antti, H., Gottfries, J., Holmes, E., Johansson, E., Lindgren, F., et al. (2004). Using chemometrics for navigating in the large data sets of genomics, proteomics, and metabonomics (gpm). Analytical and Bioanalytical Chemistry, 380, 419-429.
-
(2004)
Analytical and Bioanalytical Chemistry
, vol.380
, pp. 419-429
-
-
Eriksson, L.1
Antti, H.2
Gottfries, J.3
Holmes, E.4
Johansson, E.5
Lindgren, F.6
-
16
-
-
0038121709
-
Peak alignment of NMR signals by means of a genetic algorithm
-
Forshed, J., Schuppe-Koistinen, I., & Jacobsson, S. P. (2003). Peak alignment of NMR signals by means of a genetic algorithm. Analytica Chimica Acta, 487, 189.
-
(2003)
Analytica Chimica Acta
, vol.487
, pp. 189
-
-
Forshed, J.1
Schuppe-Koistinen, I.2
Jacobsson, S.P.3
-
17
-
-
57449094403
-
Urinary metabolite quantification employing 2D NMR spectroscopy
-
Gronwald, W., Klein, M. S., Kaspar, H., Fagerer, S., Nürnberger, N., Dettmer, K., et al. (2008). Urinary metabolite quantification employing 2D NMR spectroscopy. Analytical Chemistry, 80, 9288-9297.
-
(2008)
Analytical Chemistry
, vol.80
, pp. 9288-9297
-
-
Gronwald, W.1
Klein, M.S.2
Kaspar, H.3
Fagerer, S.4
Nürnberger, N.5
Dettmer, K.6
-
18
-
-
79956048615
-
Detection of autosomal polycystic kidney disease using NMR spectroscopic fingerprints of urine
-
Gronwald, W., Klein, M. S., Zeltner, R., Schulze, B.-D., Reinhold, S. W., Deutschmann, M., et al. (2011). Detection of autosomal polycystic kidney disease using NMR spectroscopic fingerprints of urine. Kidney International, 79, 1244-1253.
-
(2011)
Kidney International
, vol.79
, pp. 1244-1253
-
-
Gronwald, W.1
Klein, M.S.2
Zeltner, R.3
Schulze, B.-D.4
Reinhold, S.W.5
Deutschmann, M.6
-
19
-
-
0030611827
-
1H NMR spectroscopy characterisation of the complex metabolic pattern of urine from patients with inborn errors of metabolism: 2-hydroxyglutaric aciduria and maple syrup urine disease
-
1H NMR spectroscopy characterisation of the complex metabolic pattern of urine from patients with inborn errors of metabolism: 2-hydroxyglutaric aciduria and maple syrup urine disease. Journal of Pharmaceutical and Biomedical Analysis, 15, 1647-1659.
-
(1997)
Journal of Pharmaceutical and Biomedical Analysis
, vol.15
, pp. 1647-1659
-
-
Holmes, E.1
Foxall, P.J.D.2
Spraul, M.3
Farrant, R.D.4
Nicholson, J.K.5
Lindon, J.C.6
-
20
-
-
11244346557
-
Variance stabilisation applied to microarray data calibration and to the quantification of differential expression
-
Huber, W., Heydebreck, A. V., Sültmann, H., Poustka, A., & Vingron, M. (2002). Variance stabilisation applied to microarray data calibration and to the quantification of differential expression. Bioinformatics, 18, S96-S104.
-
(2002)
Bioinformatics
, vol.18
-
-
Huber, W.1
Heydebreck, A.V.2
Sültmann, H.3
Poustka, A.4
Vingron, M.5
-
21
-
-
12344280017
-
Summaries of Affymetrix GeneChip probe level data
-
Irizarry, R. A., Bolstad, B. M., Collin, F., Cope, L. M., Hobbs, B., & Speed, T. P. (2003). Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Research, 31, e15.
-
(2003)
Nucleic Acids Research
, vol.31
-
-
Irizarry, R.A.1
Bolstad, B.M.2
Collin, F.3
Cope, L.M.4
Hobbs, B.5
Speed, T.P.6
-
23
-
-
79952197936
-
Statistics in experimental design, preprocessing, and analysis of proteomics data
-
Jung, K. (2011). Statistics in experimental design, preprocessing, and analysis of proteomics data. Methods in Molecular Biology, 696, 259-272.
-
(2011)
Methods in Molecular Biology
, vol.696
, pp. 259-272
-
-
Jung, K.1
-
24
-
-
79952432828
-
Data variance and statistical significance in 2D-gel electrophoresis and DIGE experiments: Comparison of the effects of normalization methods
-
Keeping, A. J., & Collins, R. A. (2011). Data variance and statistical significance in 2D-gel electrophoresis and DIGE experiments: Comparison of the effects of normalization methods. Journal of Proteome Research, 10, 1353-1360.
-
(2011)
Journal of Proteome Research
, vol.10
, pp. 1353-1360
-
-
Keeping, A.J.1
Collins, R.A.2
-
25
-
-
79957516472
-
Discrimination of steatosis and NASH in mice using nuclear magnetic resonance spectroscopy
-
Klein, M. S., Dorn, C., Saugspier, M., Hellerbrand, C., Oefner, P. J., & Gronwald, W. (2011). Discrimination of steatosis and NASH in mice using nuclear magnetic resonance spectroscopy. Metabolomics, 7, 237-246.
-
(2011)
Metabolomics
, vol.7
, pp. 237-246
-
-
Klein, M.S.1
Dorn, C.2
Saugspier, M.3
Hellerbrand, C.4
Oefner, P.J.5
Gronwald, W.6
-
27
-
-
37249067514
-
13C NMR spectra
-
13C NMR spectra. Analytical Chemistry, 79, 9385-9390.
-
(2007)
Analytical Chemistry
, vol.79
, pp. 9385-9390
-
-
Lewis, I.A.1
Schommer, S.C.2
Hodis, B.3
Robb, K.A.4
Tonelli, M.5
Westler, W.M.6
-
28
-
-
17744413236
-
Model-based analysis of oligonucleotide arrays: Model validation, design issues and standard error application
-
research0032
-
Li, C., & Wong, W. H. (2001). Model-based analysis of oligonucleotide arrays: Model validation, design issues and standard error application. Genome Biology, 2, research0032.
-
(2001)
Genome Biology
, vol.2
-
-
Li, C.1
Wong, W.H.2
-
29
-
-
33846977711
-
Metabolomics in pharmaceutical R & D
-
Lindon, J. C., Holmes, E., & Nicholson, J. K. (2007). Metabolomics in pharmaceutical R & D. FEBS Journal, 274, 1140-1151.
-
(2007)
FEBS Journal
, vol.274
, pp. 1140-1151
-
-
Lindon, J.C.1
Holmes, E.2
Nicholson, J.K.3
-
30
-
-
79953696557
-
1H NMR and MRS data from different biofluids and tissue enhances recovery of biological information from individuals with HIV-1 infection
-
1H NMR and MRS data from different biofluids and tissue enhances recovery of biological information from individuals with HIV-1 infection. Journal of Proteome Research, 10, 1737-1745.
-
(2011)
Journal of Proteome Research
, vol.10
, pp. 1737-1745
-
-
Maher, A.D.1
Cysique, L.A.2
Brew, B.J.3
Rae, C.D.4
-
31
-
-
34548490763
-
Improved classification accuracy in 1- and 2-dimensional NMR metabolomics data using the variance stabilising generalised logarithm transformation
-
Parsons, H. M., Ludwig, C., Günther, U. L., & Viant, M. R. (2007). Improved classification accuracy in 1- and 2-dimensional NMR metabolomics data using the variance stabilising generalised logarithm transformation. BMC-Bioinformatics, 8, 234.
-
(2007)
BMC-Bioinformatics
, vol.8
, pp. 234
-
-
Parsons, H.M.1
Ludwig, C.2
Günther, U.L.3
Viant, M.R.4
-
32
-
-
27544491192
-
ROCR: Visualizing classifier performance in R
-
Sing, T., Sander, O., Beerenwinkel, N., & Lengauer, T. (2005). ROCR: Visualizing classifier performance in R. Bioinformatics, 21, 3940-3941.
-
(2005)
Bioinformatics
, vol.21
, pp. 3940-3941
-
-
Sing, T.1
Sander, O.2
Beerenwinkel, N.3
Lengauer, T.4
-
33
-
-
4544379591
-
Automatic alignment of individual peaks in large high-resolution spectral data sets
-
Stoyanova, R., Nicholls, A. W., Nicholson, J. K., Lindon, J. C., & Brown, T. R. (2004). Automatic alignment of individual peaks in large high-resolution spectral data sets. Journal of Magnetic Resonance, 170, 329-335.
-
(2004)
Journal of Magnetic Resonance
, vol.170
, pp. 329-335
-
-
Stoyanova, R.1
Nicholls, A.W.2
Nicholson, J.K.3
Lindon, J.C.4
Brown, T.R.5
-
34
-
-
33747019547
-
Centering, scaling, and transformations: Improving the biological information content of metabolomics data
-
van den Berg, R. A., Hoefsloot, H. C., Westerhuis, J. A., Smilde, A. K., & van der Werf, M. J. (2006). Centering, scaling, and transformations: Improving the biological information content of metabolomics data. BMC-Genomics, 7, 142.
-
(2006)
BMC-Genomics
, vol.7
, pp. 142
-
-
van den Berg, R.A.1
Hoefsloot, H.C.2
Westerhuis, J.A.3
Smilde, A.K.4
van der Werf, M.J.5
-
35
-
-
33644860703
-
Bias in error estimation when using cross-validation for model selection
-
Varma, S., & Simon, R. (2006). Bias in error estimation when using cross-validation for model selection. BMC-Bioinformatics, 7, 91.
-
(2006)
BMC-Bioinformatics
, vol.7
, pp. 91
-
-
Varma, S.1
Simon, R.2
-
37
-
-
75649113424
-
Computational approaches to metabolomics
-
Wishart, D. S. (2010). Computational approaches to metabolomics. Methods in Molecular Biology, 593, 283-313.
-
(2010)
Methods in Molecular Biology
, vol.593
, pp. 283-313
-
-
Wishart, D.S.1
-
38
-
-
0037200201
-
A new non-linear normalization method for reducing variability in DNA microarray experiments
-
research0048
-
Workman, C., Jensen, L. J., Jarmer, H., Berka, R., Gautier, L., Nielser, H. B., et al. (2002). A new non-linear normalization method for reducing variability in DNA microarray experiments. Genome Bioogy, 3, research0048.
-
(2002)
Genome Bioogy
, vol.3
-
-
Workman, C.1
Jensen, L.J.2
Jarmer, H.3
Berka, R.4
Gautier, L.5
Nielser, H.B.6
-
39
-
-
68049088805
-
1H NMR spectra for metabolic profiling
-
1H NMR spectra for metabolic profiling. Analytical Chemistry, 81, 6080-6088.
-
(2009)
Analytical Chemistry
, vol.81
, pp. 6080-6088
-
-
Zhang, S.1
Zheng, C.2
Lanza, I.R.3
Nair, K.S.4
Raftery, D.5
Vitek, O.6
|