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Volumn 8, Issue 9, 2013, Pages

Comparative Sequence and Structure Analysis Reveals the Conservation and Diversity of Nucleotide Positions and Their Associated Tertiary Interactions in the Riboswitches

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; LIGAND BINDING; NUCLEOTIDE SEQUENCE; PROTEIN DATA BANK; RIBOSWITCH; RNA STRUCTURE; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; STRUCTURE ANALYSIS; TERTIARY MOTIF;

EID: 84883529362     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0073984     Document Type: Article
Times cited : (16)

References (72)
  • 2
    • 66549094626 scopus 로고    scopus 로고
    • The long and the short of riboswitches
    • Serganov A, (2009) The long and the short of riboswitches. Curr Opin Struct Biol 19: 251-259.
    • (2009) Curr Opin Struct Biol , vol.19 , pp. 251-259
    • Serganov, A.1
  • 3
    • 20444478991 scopus 로고    scopus 로고
    • Riboswitches as versatile gene control elements
    • Tucker BJ, Breaker RR, (2005) Riboswitches as versatile gene control elements. Curr Opin Struct Biol 15: 342-348.
    • (2005) Curr Opin Struct Biol , vol.15 , pp. 342-348
    • Tucker, B.J.1    Breaker, R.R.2
  • 4
    • 37849045636 scopus 로고    scopus 로고
    • Riboswitch control of gene expression in plants by splicing and alternative 3′ end processing of mRNAs
    • Wachter A, Tunc-Ozdemir M, Grove BC, Green PJ, Shintani DK, et al. (2007) Riboswitch control of gene expression in plants by splicing and alternative 3′ end processing of mRNAs. Plant Cell 19: 3437-3450.
    • (2007) Plant Cell , vol.19 , pp. 3437-3450
    • Wachter, A.1    Tunc-Ozdemir, M.2    Grove, B.C.3    Green, P.J.4    Shintani, D.K.5
  • 5
    • 58049217240 scopus 로고    scopus 로고
    • Riboswitch RNAs: using RNA to sense cellular metabolism
    • Henkin TM, (2008) Riboswitch RNAs: using RNA to sense cellular metabolism. Genes Dev 22: 3383-3390.
    • (2008) Genes Dev , vol.22 , pp. 3383-3390
    • Henkin, T.M.1
  • 6
    • 27144527479 scopus 로고    scopus 로고
    • Regulation of bacterial gene expression by riboswitches
    • Winkler WC, Breaker RR, (2005) Regulation of bacterial gene expression by riboswitches. Annu Rev Microbiol 59: 487-517.
    • (2005) Annu Rev Microbiol , vol.59 , pp. 487-517
    • Winkler, W.C.1    Breaker, R.R.2
  • 7
    • 1642586299 scopus 로고    scopus 로고
    • Control of gene expression by a natural metabolite-responsive ribozyme
    • Winkler WC, Nahvi A, Roth A, Collins JA, Breaker RR, (2004) Control of gene expression by a natural metabolite-responsive ribozyme. Nature 428: 281-286.
    • (2004) Nature , vol.428 , pp. 281-286
    • Winkler, W.C.1    Nahvi, A.2    Roth, A.3    Collins, J.A.4    Breaker, R.R.5
  • 8
    • 38049025288 scopus 로고    scopus 로고
    • Chemical basis of glycine riboswitch cooperativity
    • Kwon M, Strobel SA, (2008) Chemical basis of glycine riboswitch cooperativity. RNA 14: 25-34.
    • (2008) RNA , vol.14 , pp. 25-34
    • Kwon, M.1    Strobel, S.A.2
  • 9
    • 5044234799 scopus 로고    scopus 로고
    • A glycine-dependent riboswitch that uses cooperative binding to control gene expression
    • Mandal M, Lee M, Barrick JE, Weinberg Z, Emilsson GM, et al. (2004) A glycine-dependent riboswitch that uses cooperative binding to control gene expression. Science 306: 275-279.
    • (2004) Science , vol.306 , pp. 275-279
    • Mandal, M.1    Lee, M.2    Barrick, J.E.3    Weinberg, Z.4    Emilsson, G.M.5
  • 10
    • 72149126118 scopus 로고    scopus 로고
    • A switch in time: detailing the life of a riboswitch
    • Garst AD, Batey RT, (2009) A switch in time: detailing the life of a riboswitch. Biochim Biophys Acta 1789: 584-591.
    • (2009) Biochim Biophys Acta , vol.1789 , pp. 584-591
    • Garst, A.D.1    Batey, R.T.2
  • 11
    • 34548454557 scopus 로고    scopus 로고
    • Structural features of metabolite-sensing riboswitches
    • Wakeman CA, Winkler WC, Dann CE, (2007) Structural features of metabolite-sensing riboswitches. Trends Biochem Sci 32: 415-424.
    • (2007) Trends Biochem Sci , vol.32 , pp. 415-424
    • Wakeman, C.A.1    Winkler, W.C.2    Dann, C.E.3
  • 12
    • 36248982074 scopus 로고    scopus 로고
    • Mutational analysis of the purine riboswitch aptamer domain
    • Gilbert SD, Love CE, Edwards AL, Batey RT, (2007) Mutational analysis of the purine riboswitch aptamer domain. Biochemistry 46: 13297-13309.
    • (2007) Biochemistry , vol.46 , pp. 13297-13309
    • Gilbert, S.D.1    Love, C.E.2    Edwards, A.L.3    Batey, R.T.4
  • 15
    • 0031552350 scopus 로고    scopus 로고
    • Solution structure of the HIV-2 TAR-argininamide complex
    • Brodsky AS, Williamson JR, (1997) Solution structure of the HIV-2 TAR-argininamide complex. J Mol Biol 267: 624-639.
    • (1997) J Mol Biol , vol.267 , pp. 624-639
    • Brodsky, A.S.1    Williamson, J.R.2
  • 16
    • 0029613238 scopus 로고
    • Molecular recognition in the bovine immunodeficiency virus Tat peptide-TAR RNA complex
    • Ye X, Kumar RA, Patel DJ, (1995) Molecular recognition in the bovine immunodeficiency virus Tat peptide-TAR RNA complex. Chem Biol 2: 827-840.
    • (1995) Chem Biol , vol.2 , pp. 827-840
    • Ye, X.1    Kumar, R.A.2    Patel, D.J.3
  • 17
    • 0030475417 scopus 로고    scopus 로고
    • Deep penetration of an alpha-helix into a widened RNA major groove in the HIV-1 rev peptide-RNA aptamer complex
    • Ye X, Gorin A, Ellington AD, Patel DJ, (1996) Deep penetration of an alpha-helix into a widened RNA major groove in the HIV-1 rev peptide-RNA aptamer complex. Nat Struct Biol 3: 1026-1033.
    • (1996) Nat Struct Biol , vol.3 , pp. 1026-1033
    • Ye, X.1    Gorin, A.2    Ellington, A.D.3    Patel, D.J.4
  • 19
    • 10644250950 scopus 로고    scopus 로고
    • Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs
    • Serganov A, Yuan YR, Pikovskaya O, Polonskaia A, Malinina L, et al. (2004) Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem Biol 11: 1729-1741.
    • (2004) Chem Biol , vol.11 , pp. 1729-1741
    • Serganov, A.1    Yuan, Y.R.2    Pikovskaya, O.3    Polonskaia, A.4    Malinina, L.5
  • 20
    • 33745628336 scopus 로고    scopus 로고
    • Structure of the S-adenosylmethionine riboswitch regulatory mRNA element
    • Montange RK, Batey RT, (2006) Structure of the S-adenosylmethionine riboswitch regulatory mRNA element. Nature 441: 1172-1175.
    • (2006) Nature , vol.441 , pp. 1172-1175
    • Montange, R.K.1    Batey, R.T.2
  • 21
    • 53549089576 scopus 로고    scopus 로고
    • Crystal structures of the SAM-III/S(MK) riboswitch reveal the SAM-dependent translation inhibition mechanism
    • Lu C, Smith AM, Fuchs RT, Ding F, Rajashankar K, et al. (2008) Crystal structures of the SAM-III/S(MK) riboswitch reveal the SAM-dependent translation inhibition mechanism. Nat Struct Mol Biol 15: 1076-1083.
    • (2008) Nat Struct Mol Biol , vol.15 , pp. 1076-1083
    • Lu, C.1    Smith, A.M.2    Fuchs, R.T.3    Ding, F.4    Rajashankar, K.5
  • 22
    • 62049086072 scopus 로고    scopus 로고
    • Cocrystal structure of a class I preQ1 riboswitch reveals a pseudoknot recognizing an essential hypermodified nucleobase
    • Klein DJ, Edwards TE, Ferre-D'Amare AR, (2009) Cocrystal structure of a class I preQ1 riboswitch reveals a pseudoknot recognizing an essential hypermodified nucleobase. Nat Struct Mol Biol 16: 343-344.
    • (2009) Nat Struct Mol Biol , vol.16 , pp. 343-344
    • Klein, D.J.1    Edwards, T.E.2    Ferre-D'Amare, A.R.3
  • 23
    • 55249114833 scopus 로고    scopus 로고
    • Structural insights into amino acid binding and gene control by a lysine riboswitch
    • Serganov A, Huang L, Patel DJ, (2008) Structural insights into amino acid binding and gene control by a lysine riboswitch. Nature 455: 1263-1267.
    • (2008) Nature , vol.455 , pp. 1263-1267
    • Serganov, A.1    Huang, L.2    Patel, D.J.3
  • 24
    • 62249156218 scopus 로고    scopus 로고
    • Coenzyme recognition and gene regulation by a flavin mononucleotide riboswitch
    • Serganov A, Huang L, Patel DJ, (2009) Coenzyme recognition and gene regulation by a flavin mononucleotide riboswitch. Nature 458: 233-237.
    • (2009) Nature , vol.458 , pp. 233-237
    • Serganov, A.1    Huang, L.2    Patel, D.J.3
  • 25
    • 33745635350 scopus 로고    scopus 로고
    • Structural basis for gene regulation by a thiamine pyrophosphate-sensing riboswitch
    • Serganov A, Polonskaia A, Phan AT, Breaker RR, Patel DJ, (2006) Structural basis for gene regulation by a thiamine pyrophosphate-sensing riboswitch. Nature 441: 1167-1171.
    • (2006) Nature , vol.441 , pp. 1167-1171
    • Serganov, A.1    Polonskaia, A.2    Phan, A.T.3    Breaker, R.R.4    Patel, D.J.5
  • 26
    • 79952444960 scopus 로고    scopus 로고
    • Insights into metalloregulation by M-box riboswitch RNAs via structural analysis of manganese-bound complexes
    • Ramesh A, Wakeman CA, Winkler WC, (2011) Insights into metalloregulation by M-box riboswitch RNAs via structural analysis of manganese-bound complexes. J Mol Biol 407: 556-570.
    • (2011) J Mol Biol , vol.407 , pp. 556-570
    • Ramesh, A.1    Wakeman, C.A.2    Winkler, W.C.3
  • 28
    • 84864451579 scopus 로고    scopus 로고
    • NASSAM: a server to search for and annotate tertiary interactions and motifs in three-dimensional structures of complex RNA molecules
    • Hamdani HY, Appasamy SD, Willett P, Artymiuk PJ, Firdaus-Raih M (2012) NASSAM: a server to search for and annotate tertiary interactions and motifs in three-dimensional structures of complex RNA molecules. Nucleic Acids Res.
    • (2012) Nucleic Acids Res
    • Hamdani, H.Y.1    Appasamy, S.D.2    Willett, P.3    Artymiuk, P.J.4    Firdaus-Raih, M.5
  • 29
    • 84864039860 scopus 로고    scopus 로고
    • Novel base triples in RNA structures revealed by graph theoretical searching methods
    • Firdaus-Raih M, Harrison AM, Willett P, Artymiuk PJ, (2011) Novel base triples in RNA structures revealed by graph theoretical searching methods. BMC Bioinformatics 12Suppl 13: S2.
    • (2011) BMC Bioinformatics , vol.12
    • Firdaus-Raih, M.1    Harrison, A.M.2    Willett, P.3    Artymiuk, P.J.4
  • 32
    • 0036314898 scopus 로고    scopus 로고
    • Sequence and structural conservation in RNA ribose zippers
    • Tamura M, Holbrook SR, (2002) Sequence and structural conservation in RNA ribose zippers. J Mol Biol 320: 455-474.
    • (2002) J Mol Biol , vol.320 , pp. 455-474
    • Tamura, M.1    Holbrook, S.R.2
  • 33
    • 0035423087 scopus 로고    scopus 로고
    • The kink-turn: a new RNA secondary structure motif
    • Klein DJ, Schmeing TM, Moore PB, Steitz TA, (2001) The kink-turn: a new RNA secondary structure motif. EMBO J 20: 4214-4221.
    • (2001) EMBO J , vol.20 , pp. 4214-4221
    • Klein, D.J.1    Schmeing, T.M.2    Moore, P.B.3    Steitz, T.A.4
  • 34
    • 0028168585 scopus 로고
    • Characterization of a "kissing" hairpin complex derived from the human immunodeficiency virus genome
    • Chang KY, Tinoco I Jr, (1994) Characterization of a "kissing" hairpin complex derived from the human immunodeficiency virus genome. Proc Natl Acad Sci U S A 91: 8705-8709.
    • (1994) Proc Natl Acad Sci U S A , vol.91 , pp. 8705-8709
    • Chang, K.Y.1    Tinoco Jr., I.2
  • 35
    • 0028921811 scopus 로고
    • Frequent use of the same tertiary motif by self-folding RNAs
    • Costa M, Michel F, (1995) Frequent use of the same tertiary motif by self-folding RNAs. EMBO J 14: 1276-1285.
    • (1995) EMBO J , vol.14 , pp. 1276-1285
    • Costa, M.1    Michel, F.2
  • 36
    • 0022423219 scopus 로고
    • A new principle of RNA folding based on pseudoknotting
    • Pleij CW, Rietveld K, Bosch L, (1985) A new principle of RNA folding based on pseudoknotting. Nucleic Acids Res 13: 1717-1731.
    • (1985) Nucleic Acids Res , vol.13 , pp. 1717-1731
    • Pleij, C.W.1    Rietveld, K.2    Bosch, L.3
  • 37
    • 0043123152 scopus 로고    scopus 로고
    • Tools for the automatic identification and classification of RNA base pairs
    • Yang H, Jossinet F, Leontis N, Chen L, Westbrook J, et al. (2003) Tools for the automatic identification and classification of RNA base pairs. Nucleic Acids Res 31: 3450-3460.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3450-3460
    • Yang, H.1    Jossinet, F.2    Leontis, N.3    Chen, L.4    Westbrook, J.5
  • 39
    • 65549111754 scopus 로고    scopus 로고
    • Infernal 1.0: inference of RNA alignments
    • Nawrocki EP, Kolbe DL, Eddy SR, (2009) Infernal 1.0: inference of RNA alignments. Bioinformatics 25: 1335-1337.
    • (2009) Bioinformatics , vol.25 , pp. 1335-1337
    • Nawrocki, E.P.1    Kolbe, D.L.2    Eddy, S.R.3
  • 42
    • 66449089224 scopus 로고    scopus 로고
    • The structural basis for recognition of the PreQ0 metabolite by an unusually small riboswitch aptamer domain
    • Spitale RC, Torelli AT, Krucinska J, Bandarian V, Wedekind JE, (2009) The structural basis for recognition of the PreQ0 metabolite by an unusually small riboswitch aptamer domain. J Biol Chem 284: 11012-11016.
    • (2009) J Biol Chem , vol.284 , pp. 11012-11016
    • Spitale, R.C.1    Torelli, A.T.2    Krucinska, J.3    Bandarian, V.4    Wedekind, J.E.5
  • 43
    • 33744469562 scopus 로고    scopus 로고
    • Structure of the eukaryotic thiamine pyrophosphate riboswitch with its regulatory ligand
    • Thore S, Leibundgut M, Ban N, (2006) Structure of the eukaryotic thiamine pyrophosphate riboswitch with its regulatory ligand. Science 312: 1208-1211.
    • (2006) Science , vol.312 , pp. 1208-1211
    • Thore, S.1    Leibundgut, M.2    Ban, N.3
  • 44
    • 40249103230 scopus 로고    scopus 로고
    • Comprehensive features of natural and in vitro selected GNRA tetraloop-binding receptors
    • Geary C, Baudrey S, Jaeger L, (2008) Comprehensive features of natural and in vitro selected GNRA tetraloop-binding receptors. Nucleic Acids Res 36: 1138-1152.
    • (2008) Nucleic Acids Res , vol.36 , pp. 1138-1152
    • Geary, C.1    Baudrey, S.2    Jaeger, L.3
  • 45
    • 9244225713 scopus 로고    scopus 로고
    • Structure of a natural guanine-responsive riboswitch complexed with the metabolite hypoxanthine
    • Batey RT, Gilbert SD, Montange RK, (2004) Structure of a natural guanine-responsive riboswitch complexed with the metabolite hypoxanthine. Nature 432: 411-415.
    • (2004) Nature , vol.432 , pp. 411-415
    • Batey, R.T.1    Gilbert, S.D.2    Montange, R.K.3
  • 46
    • 33747367748 scopus 로고    scopus 로고
    • Riboswitches: fold and function
    • Gilbert SD, Batey RT, (2006) Riboswitches: fold and function. Chem Biol 13: 805-807.
    • (2006) Chem Biol , vol.13 , pp. 805-807
    • Gilbert, S.D.1    Batey, R.T.2
  • 47
    • 34548726217 scopus 로고    scopus 로고
    • Ligand recognition determinants of guanine riboswitches
    • Mulhbacher J, Lafontaine DA, (2007) Ligand recognition determinants of guanine riboswitches. Nucleic Acids Res 35: 5568-5580.
    • (2007) Nucleic Acids Res , vol.35 , pp. 5568-5580
    • Mulhbacher, J.1    Lafontaine, D.A.2
  • 48
    • 0038210214 scopus 로고    scopus 로고
    • Riboswitches control fundamental biochemical pathways in Bacillus subtilis and other bacteria
    • Mandal M, Boese B, Barrick JE, Winkler WC, Breaker RR, (2003) Riboswitches control fundamental biochemical pathways in Bacillus subtilis and other bacteria. Cell 113: 577-586.
    • (2003) Cell , vol.113 , pp. 577-586
    • Mandal, M.1    Boese, B.2    Barrick, J.E.3    Winkler, W.C.4    Breaker, R.R.5
  • 49
    • 23744510923 scopus 로고    scopus 로고
    • A tertiary structural element in S box leader RNAs is required for S-adenosylmethionine-directed transcription termination
    • McDaniel BA, Grundy FJ, Henkin TM, (2005) A tertiary structural element in S box leader RNAs is required for S-adenosylmethionine-directed transcription termination. Mol Microbiol 57: 1008-1021.
    • (2005) Mol Microbiol , vol.57 , pp. 1008-1021
    • McDaniel, B.A.1    Grundy, F.J.2    Henkin, T.M.3
  • 50
    • 2342475659 scopus 로고    scopus 로고
    • Molecular basis of box C/D RNA-protein interactions; cocrystal structure of archaeal L7Ae and a box C/D RNA
    • Moore T, Zhang Y, Fenley MO, Li H, (2004) Molecular basis of box C/D RNA-protein interactions; cocrystal structure of archaeal L7Ae and a box C/D RNA. Structure 12: 807-818.
    • (2004) Structure , vol.12 , pp. 807-818
    • Moore, T.1    Zhang, Y.2    Fenley, M.O.3    Li, H.4
  • 51
    • 46349083026 scopus 로고    scopus 로고
    • The distributions, mechanisms, and structures of metabolite-binding riboswitches
    • Barrick JE, Breaker RR, (2007) The distributions, mechanisms, and structures of metabolite-binding riboswitches. Genome Biol 8: R239.
    • (2007) Genome Biol , vol.8
    • Barrick, J.E.1    Breaker, R.R.2
  • 52
    • 42149091618 scopus 로고    scopus 로고
    • Riboswitches that sense S-adenosylmethionine and S-adenosylhomocysteine
    • Wang JX, Breaker RR, (2008) Riboswitches that sense S-adenosylmethionine and S-adenosylhomocysteine. Biochem Cell Biol 86: 157-168.
    • (2008) Biochem Cell Biol , vol.86 , pp. 157-168
    • Wang, J.X.1    Breaker, R.R.2
  • 53
    • 22744455135 scopus 로고    scopus 로고
    • Pseudoknots: RNA structures with diverse functions
    • Staple DW, Butcher SE, (2005) Pseudoknots: RNA structures with diverse functions. PLoS Biol 3: e213.
    • (2005) PLoS Biol , vol.3
    • Staple, D.W.1    Butcher, S.E.2
  • 54
    • 32044442926 scopus 로고    scopus 로고
    • Evidence for a second class of S-adenosylmethionine riboswitches and other regulatory RNA motifs in alpha-proteobacteria
    • Corbino KA, Barrick JE, Lim J, Welz R, Tucker BJ, et al. (2005) Evidence for a second class of S-adenosylmethionine riboswitches and other regulatory RNA motifs in alpha-proteobacteria. Genome Biol 6: R70.
    • (2005) Genome Biol , vol.6
    • Corbino, K.A.1    Barrick, J.E.2    Lim, J.3    Welz, R.4    Tucker, B.J.5
  • 55
    • 34247181095 scopus 로고    scopus 로고
    • A riboswitch selective for the queuosine precursor preQ1 contains an unusually small aptamer domain
    • Roth A, Winkler WC, Regulski EE, Lee BW, Lim J, et al. (2007) A riboswitch selective for the queuosine precursor preQ1 contains an unusually small aptamer domain. Nat Struct Mol Biol 14: 308-317.
    • (2007) Nat Struct Mol Biol , vol.14 , pp. 308-317
    • Roth, A.1    Winkler, W.C.2    Regulski, E.E.3    Lee, B.W.4    Lim, J.5
  • 56
    • 34447528960 scopus 로고    scopus 로고
    • A loop loop interaction and a K-turn motif located in the lysine aptamer domain are important for the riboswitch gene regulation control
    • Blouin S, Lafontaine DA, (2007) A loop loop interaction and a K-turn motif located in the lysine aptamer domain are important for the riboswitch gene regulation control. RNA 13: 1256-1267.
    • (2007) RNA , vol.13 , pp. 1256-1267
    • Blouin, S.1    Lafontaine, D.A.2
  • 57
    • 79955604950 scopus 로고    scopus 로고
    • Folding of the lysine riboswitch: importance of peripheral elements for transcriptional regulation
    • Blouin S, Chinnappan R, Lafontaine DA, (2011) Folding of the lysine riboswitch: importance of peripheral elements for transcriptional regulation. Nucleic Acids Res 39: 3373-3387.
    • (2011) Nucleic Acids Res , vol.39 , pp. 3373-3387
    • Blouin, S.1    Chinnappan, R.2    Lafontaine, D.A.3
  • 58
    • 10644226734 scopus 로고    scopus 로고
    • Kissing-loop interaction in the 3′ end of the hepatitis C virus genome essential for RNA replication
    • Friebe P, Boudet J, Simorre JP, Bartenschlager R, (2005) Kissing-loop interaction in the 3′ end of the hepatitis C virus genome essential for RNA replication. J Virol 79: 380-392.
    • (2005) J Virol , vol.79 , pp. 380-392
    • Friebe, P.1    Boudet, J.2    Simorre, J.P.3    Bartenschlager, R.4
  • 59
    • 0038475947 scopus 로고    scopus 로고
    • On the occurrence of the T-loop RNA folding motif in large RNA molecules
    • Krasilnikov AS, Mondragon A, (2003) On the occurrence of the T-loop RNA folding motif in large RNA molecules. RNA 9: 640-643.
    • (2003) RNA , vol.9 , pp. 640-643
    • Krasilnikov, A.S.1    Mondragon, A.2
  • 60
    • 0036717041 scopus 로고    scopus 로고
    • Frequent occurrence of the T-loop RNA folding motif in ribosomal RNAs
    • Nagaswamy U, Fox GE, (2002) Frequent occurrence of the T-loop RNA folding motif in ribosomal RNAs. RNA 8: 1112-1119.
    • (2002) RNA , vol.8 , pp. 1112-1119
    • Nagaswamy, U.1    Fox, G.E.2
  • 61
    • 33847613460 scopus 로고    scopus 로고
    • The THI-box riboswitch, or how RNA binds thiamin pyrophosphate
    • Miranda-Rios J, (2007) The THI-box riboswitch, or how RNA binds thiamin pyrophosphate. Structure 15: 259-265.
    • (2007) Structure , vol.15 , pp. 259-265
    • Miranda-Rios, J.1
  • 62
    • 2342511433 scopus 로고    scopus 로고
    • New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control
    • Barrick JE, Corbino KA, Winkler WC, Nahvi A, Mandal M, et al. (2004) New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control. Proc Natl Acad Sci U S A 101: 6421-6426.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 6421-6426
    • Barrick, J.E.1    Corbino, K.A.2    Winkler, W.C.3    Nahvi, A.4    Mandal, M.5
  • 63
    • 34548253368 scopus 로고    scopus 로고
    • Structure and mechanism of a metal-sensing regulatory RNA
    • Dann CE, (2007) Structure and mechanism of a metal-sensing regulatory RNA. Cell 130: 878-892.
    • (2007) Cell , vol.130 , pp. 878-892
    • Dann, C.E.1
  • 64
    • 0029864853 scopus 로고    scopus 로고
    • Molecular recognition in the FMN-RNA aptamer complex
    • Fan P, Suri AK, Fiala R, Live D, Patel DJ, (1996) Molecular recognition in the FMN-RNA aptamer complex. J Mol Biol 258: 480-500.
    • (1996) J Mol Biol , vol.258 , pp. 480-500
    • Fan, P.1    Suri, A.K.2    Fiala, R.3    Live, D.4    Patel, D.J.5
  • 65
    • 0030752211 scopus 로고    scopus 로고
    • Interlocking structural motifs mediate molecular discrimination by a theophylline-binding RNA
    • Zimmermann GR, Jenison RD, Wick CL, Simorre JP, Pardi A, (1997) Interlocking structural motifs mediate molecular discrimination by a theophylline-binding RNA. Nat Struct Biol 4: 644-649.
    • (1997) Nat Struct Biol , vol.4 , pp. 644-649
    • Zimmermann, G.R.1    Jenison, R.D.2    Wick, C.L.3    Simorre, J.P.4    Pardi, A.5
  • 66
    • 0346457132 scopus 로고    scopus 로고
    • Recognition of planar and nonplanar ligands in the malachite green-RNA aptamer complex
    • Flinders J, DeFina SC, Brackett DM, Baugh C, Wilson C, et al. (2004) Recognition of planar and nonplanar ligands in the malachite green-RNA aptamer complex. Chembiochem 5: 62-72.
    • (2004) Chembiochem , vol.5 , pp. 62-72
    • Flinders, J.1    DeFina, S.C.2    Brackett, D.M.3    Baugh, C.4    Wilson, C.5
  • 67
    • 8644229237 scopus 로고    scopus 로고
    • Structure of the Tetrahymena ribozyme: base triple sandwich and metal ion at the active site
    • Guo F, Gooding AR, Cech TR, (2004) Structure of the Tetrahymena ribozyme: base triple sandwich and metal ion at the active site. Mol Cell 16: 351-362.
    • (2004) Mol Cell , vol.16 , pp. 351-362
    • Guo, F.1    Gooding, A.R.2    Cech, T.R.3
  • 68
    • 57049151833 scopus 로고    scopus 로고
    • Annotation of tertiary interactions in RNA structures reveals variations and correlations
    • Xin Y, Laing C, Leontis NB, Schlick T, (2008) Annotation of tertiary interactions in RNA structures reveals variations and correlations. RNA 14: 2465-2477.
    • (2008) RNA , vol.14 , pp. 2465-2477
    • Xin, Y.1    Laing, C.2    Leontis, N.B.3    Schlick, T.4
  • 69
    • 52949147108 scopus 로고    scopus 로고
    • The GANC tetraloop: a novel motif in the group IIC intron structure
    • Keating KS, Toor N, Pyle AM, (2008) The GANC tetraloop: a novel motif in the group IIC intron structure. J Mol Biol 383: 475-481.
    • (2008) J Mol Biol , vol.383 , pp. 475-481
    • Keating, K.S.1    Toor, N.2    Pyle, A.M.3
  • 70
    • 84255189090 scopus 로고    scopus 로고
    • The molecular interactions that stabilize RNA tertiary structure: RNA motifs, patterns, and networks
    • Butcher SE, Pyle AM, (2011) The molecular interactions that stabilize RNA tertiary structure: RNA motifs, patterns, and networks. Acc Chem Res 44: 1302-1311.
    • (2011) Acc Chem Res , vol.44 , pp. 1302-1311
    • Butcher, S.E.1    Pyle, A.M.2
  • 71
    • 0029796982 scopus 로고    scopus 로고
    • RNA tertiary structure mediation by adenosine platforms
    • Cate JH, Gooding AR, Podell E, Zhou K, Golden BL, et al. (1996) RNA tertiary structure mediation by adenosine platforms. Science 273: 1696-1699.
    • (1996) Science , vol.273 , pp. 1696-1699
    • Cate, J.H.1    Gooding, A.R.2    Podell, E.3    Zhou, K.4    Golden, B.L.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.