-
1
-
-
15244363334
-
The origin of naturally occurring perchlorate: The role of atmospheric processes
-
Dasgupta PK, Martinelango PK, Jackson WA, Anderson TA, Tian K, Tock RW, Rajagopalan S. 2005. The origin of naturally occurring perchlorate: the role of atmospheric processes. Environ. Sci. Technol. 39: 1569-1575.
-
(2005)
Environ. Sci. Technol.
, vol.39
, pp. 1569-1575
-
-
Dasgupta, P.K.1
Martinelango, P.K.2
Jackson, W.A.3
Anderson, T.A.4
Tian, K.5
Tock, R.W.6
Rajagopalan, S.7
-
2
-
-
78449238658
-
Natural chlorate in the environment: Application of a new IC-ESI/MS/MS method with a Cl18O3-internal standard
-
Balaji Rao BR, Hatzinger PB, Böhlke JK, Sturchio NC, Andraski BJ, Eckardt FD, Jackson W. 2010. Natural chlorate in the environment: application of a new IC-ESI/MS/MS method with a Cl18O3-internal standard. Environ. Sci. Technol. 44:8429-8434.
-
(2010)
Environ. Sci. Technol.
, vol.44
, pp. 8429-8434
-
-
Balaji Rao, B.R.1
Hatzinger, P.B.2
Böhlke, J.K.3
Sturchio, N.C.4
Andraski, B.J.5
Eckardt, F.D.6
Jackson, W.7
-
3
-
-
79551491420
-
Perchlorate sources, source identification and analytical methods
-
In Stroo HF, Ward CH (ed), Springer Verlag, New York, NY
-
Aziz CE, Hatzinger PB. 2009. Perchlorate sources, source identification and analytical methods, p-55-78. In Stroo HF, Ward CH (ed), In situ bioremediation of perchlorate in groundwater. Springer Verlag, New York, NY.
-
(2009)
In situ bioremediation of perchlorate in groundwater
, pp. 55-78
-
-
Aziz, C.E.1
Hatzinger, P.B.2
-
4
-
-
20044379052
-
Perchlorate biodegradation for water treatment
-
Hatzinger PB. 2005. Perchlorate biodegradation for water treatment. Environ. Sci. Technol. 39:239A-247A.
-
(2005)
Environ. Sci. Technol.
, vol.39
-
-
Hatzinger, P.B.1
-
5
-
-
3142726522
-
Microbial perchlorate reduction: Rocket-fuelled metabolism
-
Coates JD, Achenbach LA. 2004. Microbial perchlorate reduction: rocket-fuelled metabolism. Nat. Rev. Microbiol. 2:569-580.
-
(2004)
Nat. Rev. Microbiol.
, vol.2
, pp. 569-580
-
-
Coates, J.D.1
Achenbach, L.A.2
-
6
-
-
0032710938
-
Ubiquity and diversity of dissimilatory (per)chloratereducing bacteria
-
Coates JD, Michaelidou U, Bruce RA, O'Connor SM, Crespi JN, Achen-bach LA. 1999. Ubiquity and diversity of dissimilatory (per)chloratereducing bacteria. Appl. Environ. Microbiol. 65:5234-5241.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 5234-5241
-
-
Coates, J.D.1
Michaelidou, U.2
Bruce, R.A.3
O'Connor, S.M.4
Crespi, J.N.5
Achen-bach, L.A.6
-
7
-
-
77956226109
-
(Per)chlorate reduction by an acetogenic bacterium, Sporomusa sp., isolated from an underground gas storage
-
Balk M, Mehboob F, van Gelder AH, Rijpstra WI, Damsté JS, Stams AJ. 2010. (Per)chlorate reduction by an acetogenic bacterium, Sporomusa sp., isolated from an underground gas storage. Appl. Microbiol. Biotechnol. 88:595-603.
-
(2010)
Appl. Microbiol. Biotechnol
, vol.88
, pp. 595-603
-
-
Balk, M.1
Mehboob, F.2
van Gelder, A.H.3
Rijpstra, W.I.4
Damsté, J.S.5
Stams, A.J.6
-
8
-
-
38349103353
-
(Per)chlorate reduction by the thermophilic bacterium Moorella perchloratireducens sp. nov., isolated from underground gas storage
-
Balk M, van Gelder T, Weelink SA, Stams AJ. 2008. (Per)chlorate reduction by the thermophilic bacterium Moorella perchloratireducens sp. nov., isolated from underground gas storage. Appl. Environ. Microbiol. 74:403-409.
-
(2008)
Appl. Environ. Microbiol
, vol.74
, pp. 403-409
-
-
Balk, M.1
van Gelder, T.2
Weelink, S.A.3
Stams, A.J.4
-
9
-
-
0032729246
-
Purification and characterization of (per)chlorate reductase from the chlorate-respiring strain GR-1
-
Kengen SW, Rikken GB, Hagen WR, van Ginkel CG, Stams AJ. 1999. Purification and characterization of (per)chlorate reductase from the chlorate-respiring strain GR-1. J. Bacteriol. 181:6706-6711.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 6706-6711
-
-
Kengen, S.W.1
Rikken, G.B.2
Hagen, W.R.3
van Ginkel, C.G.4
Stams, A.J.5
-
11
-
-
0038643135
-
Characterization of the chlorate reductase from Pseudomonas chloritidismutans
-
Wolterink AF, Schiltz E, Hagedoorn PL, Hagen WR, Kengen SW, Stams AJ. 2003. Characterization of the chlorate reductase from Pseudomonas chloritidismutans. J. Bacteriol. 185:3210-3213.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 3210-3213
-
-
Wolterink, A.F.1
Schiltz, E.2
Hagedoorn, P.L.3
Hagen, W.R.4
Kengen, S.W.5
Stams, A.J.6
-
12
-
-
20444387562
-
Enzymes responsible for chlorate reduction by Pseudomonas sp. are different from those used for perchlorate reduction by Azospira sp
-
Steinberg LM, Trimble JJ, Logan BE. 2005. Enzymes responsible for chlorate reduction by Pseudomonas sp. are different from those used for perchlorate reduction by Azospira sp. FEMS Microbiol. Lett. 247:153-159.
-
(2005)
FEMS Microbiol. Lett.
, vol.247
, pp. 153-159
-
-
Steinberg, L.M.1
Trimble, J.J.2
Logan, B.E.3
-
13
-
-
25444441166
-
Prediction of twin-arginine signal peptides
-
doi: 10.1186/1471-2105-6-167
-
Bendtsen JD, Nielsen H, Widdick D, Palmer T, Brunak S. 2005. Prediction of twin-arginine signal peptides. BMC Bioinformatics 6:167. doi: 10.1186/1471-2105-6-167.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 167
-
-
Bendtsen, J.D.1
Nielsen, H.2
Widdick, D.3
Palmer, T.4
Brunak, S.5
-
14
-
-
33748296263
-
Crystal structure of ethylbenzene dehydrogenase from Aromatoleum aromaticum
-
Kloer DP, Hagel C, Heider J, Schulz GE. 2006. Crystal structure of ethylbenzene dehydrogenase from Aromatoleum aromaticum. Structure 14:1377-1388.
-
(2006)
Structure
, vol.14
, pp. 1377-1388
-
-
Kloer, D.P.1
Hagel, C.2
Heider, J.3
Schulz, G.E.4
-
15
-
-
0041318860
-
Insights into the respiratory electron transfer pathway from the structure of nitrate reductase A
-
Bertero MG, Rothery RA, Palak M, Hou C, Lim D, Blasco F, Weiner JH, Strynadka NC. 2003. Insights into the respiratory electron transfer pathway from the structure of nitrate reductase A. Nat. Struct. Biol. 10: 681-687.
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 681-687
-
-
Bertero, M.G.1
Rothery, R.A.2
Palak, M.3
Hou, C.4
Lim, D.5
Blasco, F.6
Weiner, J.H.7
Strynadka, N.C.8
-
16
-
-
18144412396
-
The C subunit of Ideonella dechloratans chlorate reductase: Expression, purification, refolding, and heme reconstitution
-
Karlsson J, Nilsson T. 2005. The C subunit of Ideonella dechloratans chlorate reductase: expression, purification, refolding, and heme reconstitution. Protein Expr. Purif. 41:306-312.
-
(2005)
Protein Expr. Purif.
, vol.41
, pp. 306-312
-
-
Karlsson, J.1
Nilsson, T.2
-
17
-
-
0031979433
-
NarJ is a specific chaperone required for molybdenum cofactor assembly in nitrate reductase A of Escherichia coli
-
Blasco F, Dos Santos P, Magalon A, Frixon C, Guigliarelli B, Santini CL, Giordano G. 1998. NarJ is a specific chaperone required for molybdenum cofactor assembly in nitrate reductase A of Escherichia coli. Mol. Microbiol. 28:435-447.
-
(1998)
Mol. Microbiol.
, vol.28
, pp. 435-447
-
-
Blasco, F.1
Dos Santos, P.2
Magalon, A.3
Frixon, C.4
Guigliarelli, B.5
Santini, C.L.6
Giordano, G.7
-
18
-
-
33644872480
-
NarJ chaperone binds on two distinct sites of the aponitrate reductase of Escherichia coli to coordinate molybdenum cofactor insertion and assembly
-
Vergnes A, Pommier J, Toci R, Blasco F, Giordano G, Magalon A. 2006. NarJ chaperone binds on two distinct sites of the aponitrate reductase of Escherichia coli to coordinate molybdenum cofactor insertion and assembly. J. Biol. Chem. 281:2170-2176.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 2170-2176
-
-
Vergnes, A.1
Pommier, J.2
Toci, R.3
Blasco, F.4
Giordano, G.5
Magalon, A.6
-
19
-
-
82955168969
-
Identification of a perchlorate reduction genomic island with novel regulatory and metabolic genes
-
Melnyk RA, Engelbrektson A, Clark IC, Carlson HK, Byrne-Bailey K, Coates JD. 2011. Identification of a perchlorate reduction genomic island with novel regulatory and metabolic genes. Appl. Environ. Microbiol. 77: 7401-7404.
-
(2011)
Appl. Environ. Microbiol.
, vol.77
, pp. 7401-7404
-
-
Melnyk, R.A.1
Engelbrektson, A.2
Clark, I.C.3
Carlson, H.K.4
Byrne-Bailey, K.5
Coates, J.D.6
-
21
-
-
0020014674
-
Bidirectional deletions associated with IS4
-
Habermann P, Starlinger P. 1982. Bidirectional deletions associated with IS4. Mol. Gen. Genet. 185:216-222.
-
(1982)
Mol. Gen. Genet.
, vol.185
, pp. 216-222
-
-
Habermann, P.1
Starlinger, P.2
-
22
-
-
0022394254
-
Dehalogenase genes of Pseudomonas putida PP3 on chromosomally located transposable elements
-
Slater JH, Weightman AJ, Hall BG. 1985. Dehalogenase genes of Pseudomonas putida PP3 on chromosomally located transposable elements. Mol. Biol. Evol. 2:557-567.
-
(1985)
Mol. Biol. Evol.
, vol.2
, pp. 557-567
-
-
Slater, J.H.1
Weightman, A.J.2
Hall, B.G.3
-
23
-
-
0025940311
-
Chlorobenzoate catabolic transposon Tn5271 is a composite class I element with flanking class II insertion sequences
-
Nakatsu C, Ng J, Singh R, Straus N, Wyndham C. 1991. Chlorobenzoate catabolic transposon Tn5271 is a composite class I element with flanking class II insertion sequences. Proc. Natl. Acad. Sci. USA 88:8312-8316.
-
(1991)
Proc. Natl. Acad. Sci. USA
, vol.88
, pp. 8312-8316
-
-
Nakatsu, C.1
Ng, J.2
Singh, R.3
Straus, N.4
Wyndham, C.5
-
24
-
-
77950658346
-
Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps
-
doi: 10.1186/gb-2010-11-4-r41
-
Tsai IJ, Otto TD, Berriman M. 2010. Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps. Genome Biol. 11:R41. doi: 10.1186/gb-2010-11-4-r41.
-
(2010)
Genome Biol.
, vol.11
-
-
Tsai, I.J.1
Otto, T.D.2
Berriman, M.3
-
25
-
-
0036889289
-
A third transposable element, ISPpu12, from the toluene-xylene catabolic plasmid pWW0 of Pseudomonas putida mt-2
-
Williams PA, Jones RM, Shaw LE. 2002. A third transposable element, ISPpu12, from the toluene-xylene catabolic plasmid pWW0 of Pseudomonas putida mt-2. J. Bacteriol. 184:6572-6580.
-
(2002)
J. Bacteriol.
, vol.184
, pp. 6572-6580
-
-
Williams, P.A.1
Jones, R.M.2
Shaw, L.E.3
-
26
-
-
0036889485
-
Transposition of DEH, a broad-host-range transposon flanked by ISPpu12, in Pseudomonas putida is associated with genomic rearrangements and dehalogenase gene silencing
-
Weightman AJ, Topping AW, Hill KE, Lee LL, Sakai K, Slater JH, Thomas AW. 2002. Transposition of DEH, a broad-host-range transposon flanked by ISPpu12, in Pseudomonas putida is associated with genomic rearrangements and dehalogenase gene silencing. J. Bacteriol. 184:6581-6591.
-
(2002)
J. Bacteriol.
, vol.184
, pp. 6581-6591
-
-
Weightman, A.J.1
Topping, A.W.2
Hill, K.E.3
Lee, L.L.4
Sakai, K.5
Slater, J.H.6
Thomas, A.W.7
-
27
-
-
33644873699
-
ISfinder: The reference centre for bacterial insertion sequences
-
doi: 10.1093/nar/gkj014
-
Siguier P, Perochon J, Lestrade L, Mahillon J, Chandler M. 2006. ISfinder: the reference centre for bacterial insertion sequences. Nucleic Acids Res. 34:D32-D36. doi: 10.1093/nar/gkj014.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Siguier, P.1
Perochon, J.2
Lestrade, L.3
Mahillon, J.4
Chandler, M.5
-
28
-
-
0028303763
-
Ideonella dechloratans gen. nov., sp. nov., a new bacterium capable of growing anaerobically with chlorate as an electron acceptor
-
Malmqvist Å, Welander T, Moore E, Ternström A, Molin G, Stenström IM. 1994. Ideonella dechloratans gen. nov., sp. nov., a new bacterium capable of growing anaerobically with chlorate as an electron acceptor. Syst. Appl. Microbiol. 17:58-64.
-
(1994)
Syst. Appl. Microbiol
, vol.17
, pp. 58-64
-
-
Malmqvist, A.1
Welander, T.2
Moore, E.3
Ternström, A.4
Molin, G.5
Stenström, I.M.6
-
29
-
-
0037184266
-
Cloning, characterisation, and expression of a novel gene encoding chlorite dismutase from Ideonella dechloratans
-
Thorell HD, Karlsson J, Portelius E, Nilsson T. 2002. Cloning, characterisation, and expression of a novel gene encoding chlorite dismutase from Ideonella dechloratans. Biochim. Biophys. Acta 1577:445-451.
-
(2002)
Biochim. Biophys. Acta
, vol.1577
, pp. 445-451
-
-
Thorell, H.D.1
Karlsson, J.2
Portelius, E.3
Nilsson, T.4
-
30
-
-
77956178000
-
Characterization of a cytochrome c gene located at the gene cluster for chlorate respiration in Ideonella dechloratans
-
Bohlin J, Bäcklund AS, Gustavsson N, Wahlberg S, Nilsson T. 2010. Characterization of a cytochrome c gene located at the gene cluster for chlorate respiration in Ideonella dechloratans. Microbiol. Res. 165: 450-457.
-
(2010)
Microbiol. Res.
, vol.165
, pp. 450-457
-
-
Bohlin, J.1
Bäcklund, A.S.2
Gustavsson, N.3
Wahlberg, S.4
Nilsson, T.5
-
31
-
-
80052550083
-
Genome sequences of Alicycliphilus denitrificans strains BC and K601T
-
Oosterkamp MJ, Veuskens T, Plugge CM, Langenhoff AA, Gerritse J, Van Berkel WJ, Pieper DH, Junca H, Goodwin LA, Daligault HE, Bruce DC, Detter JC, Tapia R, Han CS, Land ML, Hauser LJ, Smidt H, Stams AJ. 2011. Genome sequences of Alicycliphilus denitrificans strains BC and K601T. J. Bacteriol. 193:5028-5029.
-
(2011)
J. Bacteriol.
, vol.193
, pp. 5028-5029
-
-
Oosterkamp, M.J.1
Veuskens, T.2
Plugge, C.M.3
Langenhoff, A.A.4
Gerritse, J.5
van Berkel, W.J.6
Pieper, D.H.7
Junca, H.8
Goodwin, L.A.9
Daligault, H.E.10
Bruce, D.C.11
Detter, J.C.12
Tapia, R.13
Han, C.S.14
Land, M.L.15
Hauser, L.J.16
Smidt, H.17
Stams, A.J.18
-
32
-
-
0037096131
-
Evidence of perchlorate (ClO4-) reduction in plant tissues (poplar tree) using radio-labeled 36ClO4
-
Van Aken B, Schnoor JL. 2002. Evidence of perchlorate (ClO4-) reduction in plant tissues (poplar tree) using radio-labeled 36ClO4. Environ. Sci. Technol. 36:2783-2788.
-
(2002)
Environ. Sci. Technol.
, vol.36
, pp. 2783-2788
-
-
van Aken, B.1
Schnoor, J.L.2
-
33
-
-
0019774547
-
Excision of the 40kb segment of the TOL plasmid from Pseudomonas putida mt-2 involves direct repeats
-
Meulien P, Downing RG, Broda P. 1981. Excision of the 40kb segment of the TOL plasmid from Pseudomonas putida mt-2 involves direct repeats. Mol. Gen. Genet. 184:97-101.
-
(1981)
Mol. Gen. Genet.
, vol.184
, pp. 97-101
-
-
Meulien, P.1
Downing, R.G.2
Broda, P.3
-
35
-
-
0036866550
-
Pseudomonas chloritidismutans sp. nov., A non-denitrifying, chlorate-reducing bacterium
-
Wolterink AF, Jonker AB, Kengen SW, Stams AJ. 2002. Pseudomonas chloritidismutans sp. nov., A non-denitrifying, chlorate-reducing bacterium. Int. J. Syst. Evol. Microbiol. 52:2183-2190.
-
(2002)
Int. J. Syst. Evol. Microbiol
, vol.52
, pp. 2183-2190
-
-
Wolterink, A.F.1
Jonker, A.B.2
Kengen, S.W.3
Stams, A.J.4
-
36
-
-
26244452576
-
Dechloromonas hortensis sp. nov. and strain ASK-1, two novel (per)chlorate-reducing bacteria, and taxonomic description of strain GR-1
-
Wolterink A, Kim S, Muusse M, Kim IS, Roholl PJ, van Ginkel CG, Stams AJ, Kengen SW. 2005. Dechloromonas hortensis sp. nov. and strain ASK-1, two novel (per)chlorate-reducing bacteria, and taxonomic description of strain GR-1. Int. J. Syst. Evol. Microbiol. 55:2063-2068.
-
(2005)
Int. J. Syst. Evol. Microbiol.
, vol.55
, pp. 2063-2068
-
-
Wolterink, A.1
Kim, S.2
Muusse, M.3
Kim, I.S.4
Roholl, P.J.5
van Ginkel, C.G.6
Stams, A.J.7
Kengen, S.W.8
-
37
-
-
0346056945
-
Chlorate and nitrate reduction pathways are separately induced in the perchlorate-respiring bacterium Dechlorosoma sp. KJ and the chlorate-respiring bacterium Pseudomonas sp. PDA
-
Xu J, Trimble JJ, Steinberg L, Logan BE. 2004. Chlorate and nitrate reduction pathways are separately induced in the perchlorate-respiring bacterium Dechlorosoma sp. KJ and the chlorate-respiring bacterium Pseudomonas sp. PDA. Water Res. 38:673-680.
-
(2004)
Water Res.
, vol.38
, pp. 673-680
-
-
Xu, J.1
Trimble, J.J.2
Steinberg, L.3
Logan, B.E.4
-
38
-
-
30844460335
-
Genotype versus phenotype in the circumscription of bacterial species: The case of Pseudomonas stutzeri and Pseudomonas chloritidismutans
-
Cladera AM, García-Valdés E, Lalucat J. 2006. Genotype versus phenotype in the circumscription of bacterial species: the case of Pseudomonas stutzeri and Pseudomonas chloritidismutans. Arch. Microbiol. 184: 353-361.
-
(2006)
Arch. Microbiol.
, vol.184
, pp. 353-361
-
-
Cladera, A.M.1
García-Valdés, E.2
Lalucat, J.3
-
39
-
-
0034830306
-
Properties of a thermostable nitrate reductase from the hyperthermophilic archaeon Pyrobaculum aerophilum
-
Afshar S, Johnson E, de Vries S, Schröder I. 2001. Properties of a thermostable nitrate reductase from the hyperthermophilic archaeon Pyrobaculum aerophilum. J. Bacteriol. 183:5491-5495.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 5491-5495
-
-
Afshar, S.1
Johnson, E.2
de Vries, S.3
Schröder, I.4
-
40
-
-
0034708409
-
Purification and characterization of dissimilatory nitrate reductase from a denitrifying halophilic archaeon, Haloarcula marismortui
-
Yoshimatsu K, Sakurai T, Fujiwara T. 2000. Purification and characterization of dissimilatory nitrate reductase from a denitrifying halophilic archaeon, Haloarcula marismortui. FEBS Lett. 470:216-220.
-
(2000)
FEBS Lett.
, vol.470
, pp. 216-220
-
-
Yoshimatsu, K.1
Sakurai, T.2
Fujiwara, T.3
-
41
-
-
0025333241
-
Periplasmic and membranebound respiratory nitrate reductases in Thiosphaera pantotropha. The periplasmic enzyme catalyzes the first step in aerobic denitrification
-
Bell LC, Richardson DJ, Ferguson SJ. 2001. Periplasmic and membranebound respiratory nitrate reductases in Thiosphaera pantotropha. The periplasmic enzyme catalyzes the first step in aerobic denitrification. FEBS Lett. 265:85-87.
-
(2001)
FEBS Lett.
, vol.265
, pp. 85-87
-
-
Bell, L.C.1
Richardson, D.J.2
Ferguson, S.J.3
-
42
-
-
0023906754
-
Nitrate respiration in relation to facultative metabolism in enterobacteria
-
Stewart V. 1988. Nitrate respiration in relation to facultative metabolism in enterobacteria. Microbiol. Rev. 52:190-232.
-
(1988)
Microbiol. Rev.
, vol.52
, pp. 190-232
-
-
Stewart, V.1
-
43
-
-
0000043258
-
Perchlorate chemistry: Implications for analysis and remediation
-
Urbansky ET. 1998. Perchlorate chemistry: implications for analysis and remediation. Bioremediat. J. 2:81-85.
-
(1998)
Bioremediat. J.
, vol.2
, pp. 81-85
-
-
Urbansky, E.T.1
-
44
-
-
35448931242
-
Look on the positive side! The orientation, identification and bioenergetics of archaeal membrane-bound nitrate reductases
-
Martinez-Espinosa RM, Dridge EJ, Bonete MJ, Butt JN, Butler CS, Sargent F, Richardson DJ. 2007. Look on the positive side! The orientation, identification and bioenergetics of archaeal membrane-bound nitrate reductases. FEMS Microbiol. Lett. 276:129-139.
-
(2007)
FEMS Microbiol. Lett.
, vol.276
, pp. 129-139
-
-
Martinez-Espinosa, R.M.1
Dridge, E.J.2
Bonete, M.J.3
Butt, J.N.4
Butler, C.S.5
Sargent, F.6
Richardson, D.J.7
-
45
-
-
0030036323
-
Dimethylsulfide: Acceptor oxidoreductase from Rhodobacter sulfidophilus
-
Hanlon SP, Toh TH, Solomon PS, Holt RA, McEwan AG. 2004. Dimethylsulfide: acceptor oxidoreductase from Rhodobacter sulfidophilus. Eur. J. Biochem. 239:391-396.
-
(2004)
Eur. J. Biochem.
, vol.239
, pp. 391-396
-
-
Hanlon, S.P.1
Toh, T.H.2
Solomon, P.S.3
Holt, R.A.4
McEwan, A.G.5
-
46
-
-
52949088250
-
Environmental genomics reveals a functional chlorite dismutase in the nitrite oxidizing bacterium "Candidatus Nitrospira defluvii. "
-
Maixner F, Wagner M, Lücker S, Pelletier E, Schmitz-Esser S, Hace K, Spieck E, Konrat R, Le Paslier D, Daims H. 2008. Environmental genomics reveals a functional chlorite dismutase in the nitrite oxidizing bacterium "Candidatus Nitrospira defluvii. " Environ. Microbiol. 10: 3043-3056.
-
(2008)
Enviro. Microbiol.
, vol.10
, pp. 3043-3056
-
-
Maixner, F.1
Wagner, M.2
Lücker, S.3
Pelletier, E.4
Schmitz-Esser, S.5
Hace, K.6
Spieck, E.7
Konrat, R.8
Le Paslier, D.9
Daims, H.10
-
47
-
-
4644239140
-
Metabolic primers for detection of (per)chlorate-reducing bacteria in the environment and phylogenetic analysis of cld gene sequences
-
Bender KS, Rice MR, Fugate WH, Coates JD, Achenbach LA. 2004. Metabolic primers for detection of (per)chlorate-reducing bacteria in the environment and phylogenetic analysis of cld gene sequences. Appl. Environ. Microbiol. 70:5651-5658.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 5651-5658
-
-
Bender, K.S.1
Rice, M.R.2
Fugate, W.H.3
Coates, J.D.4
Achenbach, L.A.5
-
48
-
-
79956072032
-
Unexpected diversity of chlorite dismutases: A catalytically efficient dimeric enzyme from Nitrobacter winogradskyi
-
Mlynek G, Sjöblom B, Kostan J, Füreder S, Maixner F, Gysel K, Furtmüller PG, Obinger C, Wagner M, Daims H, Djinović-Carugo K. 2011. Unexpected diversity of chlorite dismutases: a catalytically efficient dimeric enzyme from Nitrobacter winogradskyi. J. Bacteriol. 193: 2408-2417.
-
(2011)
J. Bacteriol.
, vol.193
, pp. 2408-2417
-
-
Mlynek, G.1
Sjöblom, B.2
Kostan, J.3
Füreder, S.4
Maixner, F.5
Gysel, K.6
Furtmüller, P.G.7
Obinger, C.8
Wagner, M.9
Daims, H.10
Djinović-Carugo, K.11
-
49
-
-
77956480280
-
Structural features promoting dioxygen production by Dechloromonas aromatica chlorite dismutase
-
Goblirsch BR, Streit BR, Dubois JL, Wilmot CM. 2010. Structural features promoting dioxygen production by Dechloromonas aromatica chlorite dismutase. J. Biol. Inorg. Chem. 15:879-888.
-
(2010)
J. Biol. Inorg. Chem.
, vol.15
, pp. 879-888
-
-
Goblirsch, B.R.1
Streit, B.R.2
Dubois, J.L.3
Wilmot, C.M.4
-
50
-
-
61449229684
-
Purification and characterization of a chlorite dismutase from Pseudomonas chloritidismutans
-
Mehboob F, Wolterink AF, Vermeulen AJ, Jiang B, Hagedoorn PL, Stams AJ, Kengen SW. 2009. Purification and characterization of a chlorite dismutase from Pseudomonas chloritidismutans. FEMS Microbiol. Lett. 293:115-121.
-
(2009)
FEMS Microbiol. Lett.
, vol.293
, pp. 115-121
-
-
Mehboob, F.1
Wolterink, A.F.2
Vermeulen, A.J.3
Jiang, B.4
Hagedoorn, P.L.5
Stams, A.J.6
Kengen, S.W.7
-
51
-
-
61549109224
-
Crystal structure of chlorite dismutase, a detoxifying enzyme producing molecular oxygen
-
De Geus DC, Thomassen EA, Hagedoorn PL, Pannu NS, van Duijn E, Abrahams JP. 2009. Crystal structure of chlorite dismutase, a detoxifying enzyme producing molecular oxygen. J. Mol. Biol. 387:192-206.
-
(2009)
J. Mol. Biol.
, vol.387
, pp. 192-206
-
-
de Geus, D.C.1
Thomassen, E.A.2
Hagedoorn, P.L.3
Pannu, N.S.4
van Duijn, E.5
Abrahams, J.P.6
-
52
-
-
77958161524
-
Structural and functional characterisation of the chlorite dismutase from the nitrite-oxidizing bacterium Candidatus Nitrospira defluvii identification of a catalytically important amino acid residue
-
Kostan J, Sjöblom B, Maixner F, Mlynek G, Furtmüller PG, Obinger C, Wagner M, Daims H, Djinović-Carugo K. 2010. Structural and functional characterisation of the chlorite dismutase from the nitrite-oxidizing bacterium Candidatus Nitrospira defluvii identification of a catalytically important amino acid residue. J. Struct. Biol. 172:331-342.
-
(2010)
J. Struct. Biol.
, vol.172
, pp. 331-342
-
-
Kostan, J.1
Sjöblom, B.2
Maixner, F.3
Mlynek, G.4
Furtmüller, P.G.5
Obinger, C.6
Wagner, M.7
Daims, H.8
Djinović-Carugo, K.9
-
53
-
-
77953297724
-
Quinol-cytochrome c oxidoreductase and cytochrome C4 mediate electron transfer during selenate respiration in Thauera selenatis
-
Lowe EC, Bydder S, Hartshorne RS, Tape HL, Dridge EJ, Debieux CM, Paszkiewicz K, Singleton I, Lewis RJ, Santini JM, Richardson DJ, Butler CS. 2010. Quinol-cytochrome c oxidoreductase and cytochrome C4 mediate electron transfer during selenate respiration in Thauera selenatis. J. Biol. Chem. 285:18433-18442.
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 18433-18442
-
-
Lowe, E.C.1
Bydder, S.2
Hartshorne, R.S.3
Tape, H.L.4
Dridge, E.J.5
Debieux, C.M.6
Paszkiewicz, K.7
Singleton, I.8
Lewis, R.J.9
Santini, J.M.10
Richardson, D.J.11
Butler, C.S.12
-
54
-
-
0036016822
-
Molecular analysis of dimethyl sulphide dehydrogenase from Rhodovulum sulfidophilum: Its place in the dimethyl sulphoxide reductase family of microbial molybdopterin-containing enzymes
-
McDevitt CA, Hugenholtz P, Hanson GR, McEwan AG. 2002. Molecular analysis of dimethyl sulphide dehydrogenase from Rhodovulum sulfidophilum: its place in the dimethyl sulphoxide reductase family of microbial molybdopterin-containing enzymes. Mol. Microbiol. 44: 1575-1587.
-
(2002)
Mol. Microbiol.
, vol.44
, pp. 1575-1587
-
-
McDevitt, C.A.1
Hugenholtz, P.2
Hanson, G.R.3
McEwan, A.G.4
-
56
-
-
79960364988
-
Purification and characterization of a soluble cytochrome c capable of delivering electrons to chlorate reductase in Ideonella dechloratans
-
Bäcklund AS, Nilsson T. 2011. Purification and characterization of a soluble cytochrome c capable of delivering electrons to chlorate reductase in Ideonella dechloratans. FEMS Microbiol. Lett. 321:115-120.
-
(2011)
FEMS Microbiol. Lett.
, vol.321
, pp. 115-120
-
-
Bäcklund, A.S.1
Nilsson, T.2
-
57
-
-
79959931985
-
HMMER web server: Interactive sequence similarity searching
-
doi: 10.1093/nar/gkr367
-
Finn RD, Clements J, Eddy SR. 2011. HMMER web server: interactive sequence similarity searching. Nucleic Acids Res. 39:W29-W37. doi: 10.1093/nar/gkr367.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Finn, R.D.1
Clements, J.2
Eddy, S.R.3
-
58
-
-
0035900575
-
Two c-type cytochromes, NirM and NirC, encoded in the nir gene cluster of Pseudomonas aeruginosa act as electron donors for nitrite reductase
-
Hasegawa N, Arai H, Igarashi Y. 2001. Two c-type cytochromes, NirM and NirC, encoded in the nir gene cluster of Pseudomonas aeruginosa act as electron donors for nitrite reductase. Biochem. Biophys. Res. Commun. 288:1223-1230.
-
(2001)
Biochem. Biophys. Res. Commun.
, vol.288
, pp. 1223-1230
-
-
Hasegawa, N.1
Arai, H.2
Igarashi, Y.3
-
59
-
-
84864082365
-
Expression of chlorite dismutase and chlorate reductase in the presence of oxygen and/or chlorate as the terminal electron acceptor in Ideonella dechloratans
-
Lindqvist MH, Johansson N, Nilsson T, Rova M. 2012. Expression of chlorite dismutase and chlorate reductase in the presence of oxygen and/or chlorate as the terminal electron acceptor in Ideonella dechloratans. Appl. Environ. Microbiol. 78:4380-4385.
-
(2012)
Appl. Environ. Microbiol.
, vol.78
, pp. 4380-4385
-
-
Lindqvist, M.H.1
Johansson, N.2
Nilsson, T.3
Rova, M.4
-
60
-
-
84860467728
-
Characterization of a novel ArsR-like regulator encoded by Rv2034 in Mycobacterium tuberculosis
-
doi: 10.1371/journal.pone.0036255
-
Gao CH, Yang M, He ZG. 2012. Characterization of a novel ArsR-like regulator encoded by Rv2034 in Mycobacterium tuberculosis. PLoS One 7:e36255. doi: 10.1371/journal.pone.0036255.
-
(2012)
PLoS One
, vol.7
-
-
Gao, C.H.1
Yang, M.2
He, Z.G.3
-
61
-
-
84861898310
-
IMG: The integrated microbial genomes database and comparative analysis system
-
doi: 10.1093/nar/gkr1044
-
Markowitz VM, Chen IMA, Palaniappan K, Chu K, Szeto E, Grechkin Y, Ratner A, Jacob B, Huang J, Williams P, Huntemann M, Anderson I, Mavromatis K, Ivanova NN, Kyrpides NC. 2011. IMG: the integrated microbial genomes database and comparative analysis system. Nucleic Acids Res. 40:D115-D122. doi: 10.1093/nar/gkr1044.
-
(2011)
Nucleic Acids Res.
, vol.40
-
-
Markowitz, V.M.1
Chen, I.M.A.2
Palaniappan, K.3
Chu, K.4
Szeto, E.5
Grechkin, Y.6
Ratner, A.7
Jacob, B.8
Huang, J.9
Williams, P.10
Huntemann, M.11
Anderson, I.12
Mavromatis, K.13
Ivanova, N.N.14
Kyrpides, N.C.15
-
62
-
-
40549120596
-
The RAST server: Rapid annotations using subsystems technology
-
doi: 10.1186/1471-2164-9-75
-
Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O. 2008. The RAST server: rapid annotations using subsystems technology. BMC Genomics 9:75. doi: 10.1186/1471-2164-9-75.
-
(2008)
BMC Genomics
, vol.9
, pp. 75
-
-
Aziz, R.K.1
Bartels, D.2
Best, A.A.3
DeJongh, M.4
Disz, T.5
Edwards, R.A.6
Formsma, K.7
Gerdes, S.8
Glass, E.M.9
Kubal, M.10
Meyer, F.11
Olsen, G.J.12
Olson, R.13
Osterman, A.L.14
Overbeek, R.A.15
McNeil, L.K.16
Paarmann, D.17
Paczian, T.18
Parrello, B.19
Pusch, G.D.20
Reich, C.21
Stevens, R.22
Vassieva, O.23
Vonstein, V.24
Wilke, A.25
Zagnitko, O.26
more..
-
63
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
doi: 10.1186/gb-2009-10-3-r25
-
Langmead B, Trapnell C, Pop M, Salzberg SL. 2009. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10:R25. doi: 10.1186/gb-2009-10-3-r25.
-
(2009)
Genome Biol.
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
64
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
65
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
1000 Genome Project Data Processing Subgroup
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R, 1000 Genome Project Data Processing Subgroup. 2009. The sequence alignment/map format and SAMtools. Bioinformatics 25:2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
66
-
-
33644857839
-
GenomeDiagram: A python package for the visualization of large-scale genomic data
-
Pritchard L, White JA, Birch PR, Toth IK. 2006. GenomeDiagram: a python package for the visualization of large-scale genomic data. Bioinformatics 22:616-617.
-
(2006)
Bioinformatics
, vol.22
, pp. 616-617
-
-
Pritchard, L.1
White, J.A.2
Birch, P.R.3
Toth, I.K.4
-
67
-
-
84870431038
-
CD-HIT: Accelerated for clustering the next-generation sequencing data
-
Fu L, Niu B, Zhu Z, Wu S, Li W. 2012. CD-HIT: accelerated for clustering the next-generation sequencing data. Bioinformatics 28: 3150-3152.
-
(2012)
Bioinformatics
, vol.28
, pp. 3150-3152
-
-
Fu, L.1
Niu, B.2
Zhu, Z.3
Wu, S.4
Li, W.5
-
68
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
Castresana J. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol. Biol. Evol. 17:540-552.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 540-552
-
-
Castresana, J.1
-
69
-
-
77949718257
-
FastTree 2-approximately maximum-likelihood trees for large alignments
-
doi: 10.1371/journal.pone.0009490
-
Price MN, Dehal PS, Arkin AP. 2010. FastTree 2-approximately maximum-likelihood trees for large alignments. PLoS One 5:e9490. doi: 10.1371/journal.pone.0009490.
-
(2010)
PLoS One
, vol.5
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
70
-
-
18744382506
-
ProtTest: Selection of best-fit models of protein evolution
-
Abascal F, Zardoya R, Posada D. 2005. ProtTest: selection of best-fit models of protein evolution. Bioinformatics 21:2104-2105.
-
(2005)
Bioinformatics
, vol.21
, pp. 2104-2105
-
-
Abascal, F.1
Zardoya, R.2
Posada, D.3
-
71
-
-
33750403801
-
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688-2690.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
72
-
-
58149200948
-
The Ribosomal Database Project: Improved alignments and new tools for rRNA analysis
-
doi: 10.1093/nar/ gkp353
-
Cole JR, Wang Q, Cardenas E, Fish J, Chai B, Farris RJ, Kulam-Syed-Mohideen AS, McGarrell DM, Marsh T, Garrity GM, Tiedje JM. 2009. The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res. 37:D141-D145. doi: 10.1093/nar/ gkp353.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Cole, J.R.1
Wang, Q.2
Cardenas, E.3
Fish, J.4
Chai, B.5
Farris, R.J.6
Kulam-Syed-Mohideen, A.S.7
McGarrell, D.M.8
Marsh, T.9
Garrity, G.M.10
Tiedje, J.M.11
-
73
-
-
0034849408
-
MrBayes: Bayesian inference of phylogenetic trees
-
Huelsenbeck JP, Ronquist F. 2001. MrBayes: bayesian inference of phylogenetic trees. Bioinformatics 17:754-755.
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
74
-
-
0242696464
-
Purification and characterization of the selenate reductase from Thauera selenatis
-
Schröder I, Rech S, Krafft T, Macy JM. 1997. Purification and characterization of the selenate reductase from Thauera selenatis. J. Biol. Chem. 272:23765-23768.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 23765-23768
-
-
Schröder, I.1
Rech, S.2
Krafft, T.3
Macy, J.M.4
|