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Volumn 172, Issue 3, 2010, Pages 331-342

Structural and functional characterisation of the chlorite dismutase from the nitrite-oxidizing bacterium " Candidatus Nitrospira defluvii": Identification of a catalytically important amino acid residue

Author keywords

(Per)chlorate bioremediation; 3D structure; Candidatus Nitrospira defluvii; Catalytic mechanism; Chlorite dismutase; Enzyme kinetics; Heme proteins; Site directed mutagenesis; Structure based alignment

Indexed keywords

AMINO ACID; ARGININE; BACTERIAL ENZYME; CHLORIDE; CHLORITE DISMUTASE; HEME; HYPOCHLORITE; MUTANT PROTEIN; OXYGEN; PERCHLORATE; UNCLASSIFIED DRUG;

EID: 77958161524     PISSN: 10478477     EISSN: 10958657     Source Type: Journal    
DOI: 10.1016/j.jsb.2010.06.014     Document Type: Article
Times cited : (78)

References (31)
  • 2
    • 0023653927 scopus 로고
    • Simultaneous determination of hemes a, b, and c from pyridine hemochrome spectra
    • Berry E.A., Trumpower B.L. Simultaneous determination of hemes a, b, and c from pyridine hemochrome spectra. Anal. Biochem. 1987, 161:1-15.
    • (1987) Anal. Biochem. , vol.161 , pp. 1-15
    • Berry, E.A.1    Trumpower, B.L.2
  • 3
    • 58949093219 scopus 로고    scopus 로고
    • The chemistry and biochemistry of heme c: functional bases for covalent attachment
    • Bowman S.E., Bren K.L. The chemistry and biochemistry of heme c: functional bases for covalent attachment. Nat. Prod. Rep. 2008, 25:1118-1130.
    • (2008) Nat. Prod. Rep. , vol.25 , pp. 1118-1130
    • Bowman, S.E.1    Bren, K.L.2
  • 4
    • 0028103275 scopus 로고
    • The CCP4 suite: programs for protein crystallography
    • CCP4
    • CCP4 The CCP4 suite: programs for protein crystallography. Acta Cryst. D 1994, 50:760-763.
    • (1994) Acta Cryst. D , vol.50 , pp. 760-763
  • 5
    • 3142726522 scopus 로고    scopus 로고
    • Microbial perchlorate reduction: rocket-fueled metabolism
    • Coates J.D., Achenbach L.A. Microbial perchlorate reduction: rocket-fueled metabolism. Nat. Rev. Microbiol. 2004, 2:569-580.
    • (2004) Nat. Rev. Microbiol. , vol.2 , pp. 569-580
    • Coates, J.D.1    Achenbach, L.A.2
  • 7
    • 3242886389 scopus 로고    scopus 로고
    • MOLPROBITY: structure validation and all-atom contact analysis for nucleic acids and their complexes
    • Davis I.W., Murray L.W., Richardson J.S., Richardson D.C. MOLPROBITY: structure validation and all-atom contact analysis for nucleic acids and their complexes. Nucl. Acids Res. 2004, 32:W615-W619.
    • (2004) Nucl. Acids Res. , vol.32
    • Davis, I.W.1    Murray, L.W.2    Richardson, J.S.3    Richardson, D.C.4
  • 8
    • 49249102611 scopus 로고    scopus 로고
    • Cloning, expression, purification, crystallization and preliminary X-ray diffraction analysis of chlorite dismutase: a detoxifying enzyme producing molecular oxygen
    • de Geus D.C., Thomassen E.A., van der Feltz C.L., Abrahams J.P. Cloning, expression, purification, crystallization and preliminary X-ray diffraction analysis of chlorite dismutase: a detoxifying enzyme producing molecular oxygen. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 2008, 64:730-732.
    • (2008) Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. , vol.64 , pp. 730-732
    • de Geus, D.C.1    Thomassen, E.A.2    van der Feltz, C.L.3    Abrahams, J.P.4
  • 10
    • 77958195588 scopus 로고    scopus 로고
    • The PyMOL Molecular Graphics System on World Wide Web.
    • DeLano, W.L., 2000. The PyMOL Molecular Graphics System on World Wide Web. http://www.pymol.org.
    • (2000)
    • DeLano, W.L.1
  • 13
    • 77956480280 scopus 로고    scopus 로고
    • Structural features promoting dioxygen production by Dechloromonas aromatica chlorite dismutase. J. Biol. Inorg. Chem.
    • Goblirsch, B.R., Streit, B.R., Dubois, J.L., Wilmot, C.M., 2010. Structural features promoting dioxygen production by Dechloromonas aromatica chlorite dismutase. J. Biol. Inorg. Chem.
    • (2010)
    • Goblirsch, B.R.1    Streit, B.R.2    Dubois, J.L.3    Wilmot, C.M.4
  • 14
    • 0036403133 scopus 로고    scopus 로고
    • Spectroscopic characterization and ligand-binding properties of chlorite dismutase from the chlorate respiring bacterial strain GR-1
    • Hagedoorn P.L., De Geus D.C., Hagen W.R. Spectroscopic characterization and ligand-binding properties of chlorite dismutase from the chlorate respiring bacterial strain GR-1. Eur. J. Biochem. 2002, 269:4905-4911.
    • (2002) Eur. J. Biochem. , vol.269 , pp. 4905-4911
    • Hagedoorn, P.L.1    De Geus, D.C.2    Hagen, W.R.3
  • 15
    • 0027879008 scopus 로고
    • Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants
    • Kabsch W. Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants. J. Appl. Cryst. 1993, 26:795-800.
    • (1993) J. Appl. Cryst. , vol.26 , pp. 795-800
    • Kabsch, W.1
  • 16
    • 13444307044 scopus 로고    scopus 로고
    • Secondary-structure matching (SSM), a new tool for fast protein structure alignment in 3D
    • Krissinel E., Henrick K. Secondary-structure matching (SSM), a new tool for fast protein structure alignment in 3D. Acta Crystallogr. D Biol. Crystallogr. 2004, 60:2256-2268.
    • (2004) Acta Crystallogr. D Biol. Crystallogr. , vol.60 , pp. 2256-2268
    • Krissinel, E.1    Henrick, K.2
  • 17
    • 57349184076 scopus 로고    scopus 로고
    • Mechanism of and exquisite selectivity for O-O bond formation by the heme-dependent chlorite dismutase
    • Lee A.Q., Streit B.R., Zdilla M.J., Abu-Omar M.M., DuBois J.L. Mechanism of and exquisite selectivity for O-O bond formation by the heme-dependent chlorite dismutase. Proc. Natl. Acad. Sci. USA 2008, 105:15654-15659.
    • (2008) Proc. Natl. Acad. Sci. USA , vol.105 , pp. 15654-15659
    • Lee, A.Q.1    Streit, B.R.2    Zdilla, M.J.3    Abu-Omar, M.M.4    DuBois, J.L.5
  • 18
    • 33845873289 scopus 로고    scopus 로고
    • Interactive tree of life (iTOL): an online tool for phylogenetic tree display and annotation
    • Letunic I., Bork P. Interactive tree of life (iTOL): an online tool for phylogenetic tree display and annotation. Bioinformatics 2007, 23:127-128.
    • (2007) Bioinformatics , vol.23 , pp. 127-128
    • Letunic, I.1    Bork, P.2
  • 21
    • 0347383760 scopus 로고    scopus 로고
    • ARP/wARP and automatic interpretation of protein electron density maps
    • Morris R.J., Perrakis A., Lamzin V.S. ARP/wARP and automatic interpretation of protein electron density maps. Methods Enzymol. 2003, 374:229-244.
    • (2003) Methods Enzymol. , vol.374 , pp. 229-244
    • Morris, R.J.1    Perrakis, A.2    Lamzin, V.S.3
  • 23
    • 33644942172 scopus 로고    scopus 로고
    • Selective enrichment and molecular characterization of a previously uncultured Nitrospira-like bacterium from activated sludge
    • Spieck E., Hartwig C., McCormack I., Maixner F., Wagner M., Lipski A., Daims H. Selective enrichment and molecular characterization of a previously uncultured Nitrospira-like bacterium from activated sludge. Environ. Microbiol. 2006, 8:405-415.
    • (2006) Environ. Microbiol. , vol.8 , pp. 405-415
    • Spieck, E.1    Hartwig, C.2    McCormack, I.3    Maixner, F.4    Wagner, M.5    Lipski, A.6    Daims, H.7
  • 25
    • 43249130246 scopus 로고    scopus 로고
    • Chemical and steady-state kinetic analyses of a heterologously expressed heme dependent chlorite dismutase
    • Streit B.R., DuBois J.L. Chemical and steady-state kinetic analyses of a heterologously expressed heme dependent chlorite dismutase. Biochemistry 2008, 47:5271-5280.
    • (2008) Biochemistry , vol.47 , pp. 5271-5280
    • Streit, B.R.1    DuBois, J.L.2
  • 26
    • 0033991775 scopus 로고    scopus 로고
    • Oxidative cell damage in Kat-sod assay of oxyhalides as inorganic disinfection by-products and their occurrence by ozonation
    • Ueno H., Oishi K., Sayato Y., Nakamuro K. Oxidative cell damage in Kat-sod assay of oxyhalides as inorganic disinfection by-products and their occurrence by ozonation. Arch Environ. Contam. Toxicol. 2000, 38:1-6.
    • (2000) Arch Environ. Contam. Toxicol. , vol.38 , pp. 1-6
    • Ueno, H.1    Oishi, K.2    Sayato, Y.3    Nakamuro, K.4
  • 27
    • 0038210935 scopus 로고    scopus 로고
    • Advances in direct methods for protein crystallography
    • Uson I., Sheldrick G.M. Advances in direct methods for protein crystallography. Curr. Opin. Struct. Biol. 1999, 9:643-648.
    • (1999) Curr. Opin. Struct. Biol. , vol.9 , pp. 643-648
    • Uson, I.1    Sheldrick, G.M.2
  • 28
    • 0000560808 scopus 로고    scopus 로고
    • MOLREP: an automated program for molecular replacement
    • Vagin A., Teplyakov A. MOLREP: an automated program for molecular replacement. J. Appl. Cryst. 1997, 30:1022-1025.
    • (1997) J. Appl. Cryst. , vol.30 , pp. 1022-1025
    • Vagin, A.1    Teplyakov, A.2
  • 29
    • 0029801773 scopus 로고    scopus 로고
    • Purification and characterization of chlorite dismutase: a novel oxygen-generating enzyme
    • van Ginkel C.G., Rikken G.B., Kroon A.G., Kengen S.W. Purification and characterization of chlorite dismutase: a novel oxygen-generating enzyme. Arch. Microbiol. 1996, 166:321-326.
    • (1996) Arch. Microbiol. , vol.166 , pp. 321-326
    • van Ginkel, C.G.1    Rikken, G.B.2    Kroon, A.G.3    Kengen, S.W.4
  • 30
    • 0031823778 scopus 로고    scopus 로고
    • Toxicity of chlorate and chlorite to selected species of algae, bacteria, and fungi
    • van Wijk D.J., Kroon S.G., Garttener-Arends I.C. Toxicity of chlorate and chlorite to selected species of algae, bacteria, and fungi. Ecotoxicol. Environ. Saf 1998, 40:206-211.
    • (1998) Ecotoxicol. Environ. Saf , vol.40 , pp. 206-211
    • van Wijk, D.J.1    Kroon, S.G.2    Garttener-Arends, I.C.3


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