Pseudomonas chloritidismutans sp. nov., a non-denitrifying, chlorate-reducing bacterium

International Journal of Systematic and Evolutionary Microbiology

Volumn 52, Issue 6, 2002, Pages 2183-2190

  Wolterink, A F W M ^a   Jonker, A B ^a   Kengen, S W M ^a   Stams, A J M ^a  

^a WAGENINGEN UNIVERSITY   (Netherlands)

Author keywords

Chlorate reduction; Chlorite dismutation; Denitrification; Pseudomonas chlorotidismutans sp. nov.

Indexed keywords

BROMATE; CELL EXTRACT; CHLORATE; DNA 16S; NITRATE; NITRATE REDUCTASE; OXYGEN; PERCHLORATE; RIBOSOME DNA;

BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATE; BIOREACTOR; CHROMOSOME PAIRING; CONTROLLED STUDY; DENITRIFICATION; DNA DNA HYBRIDIZATION; DNA SEQUENCE; ELECTRON TRANSPORT; ENZYME ACTIVITY; GENOTYPE PHENOTYPE CORRELATION; GRAM NEGATIVE FACULTATIVELY ANAEROBIC RODS; HETERODUPLEX ANALYSIS; MICROBIAL BIOMASS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; PSEUDOMONAS; PSEUDOMONAS CHLORITIDISMUTANS; PSEUDOMONAS STUTZERI; REVIEW; SPECIES DIFFERENCE; TYPE STRAIN;

BIOREACTORS; CHLORATES; DNA, BACTERIAL; DNA, RIBOSOMAL; MICROSCOPY, ELECTRON; MOLECULAR SEQUENCE DATA; OXIDATION-REDUCTION; PHENOTYPE; PHYLOGENY; PSEUDOMONAS; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SPECIES SPECIFICITY;

BACTERIA (MICROORGANISMS); NEGIBACTERIA; PSEUDOMONAS; PSEUDOMONAS CHLORITIDISMUTANS; PSEUDOMONAS STUTZERI;

EID: 0036866550     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.02102-0     Document Type: Review

References (49)

1. Achenbach, L. A., Michaelidou, U., Bruce, R. A., Fryman, J. & Coates, J. D. (2001). Dechloromonas agitata gen. nov., sp. nov. and Dechlorosoma suillum gen. nov., sp. nov., two novel environmentally dominant (per)chlorate-reducing bacteria and their phylogenetic position. Int J Syst Evol Microbiol 51, 527-533.
2. Agaev, R., Danilov, V., Khachaturov, V., Kasymov, B. & Tishabaev, B. (1986). The toxicity to warm-blooded animals and fish of new defoliants based on sodium and magnesium chlorates. Uzb Biol Zh 1, 40-43.
3. Bennasar, A., Rosselló-Mora, R., Lalucat, J. & Moore, E. R. B. (1996). 16S rRNA gene sequence analysis relative to genomovars of Pseudomonas stutzeri and proposal of Pseudomonas balearica sp. nov. Int J Syst Bacteriol 46, 200-205.
4. Bergan, T. (1981). Human- and animal-pathogenic members of the genus Pseudomonas. In The Prokaryotes, pp. 688-693. Edited by M. P. Starr, H. Stolp, H. G. Trüper, A. Balows & H. G. Schlegel. Berlin: Springer.
5. Bradford, M. M. (1976). A rapid and sensitive method for the quantitation of microgram quantities of proteins utilizing the principle of protein-dye binding. Anal Biochem 72, 248-254.
6. Breznak, J. A. & Costilow, R. N. (1994). Physiological factors in growth. In Methods for General and Molecular Bacteriology, pp. 139-141. Edited by P. Gerhardt, R. G. E. Murray, W. A. Woods & N. R. Krieg. Washington, DC: American Society for Microbiology.
7. Bruce, R. A., Achenbach, L. A. & Coates, J. D. (1999). Reduction of (per)chlorate by a novel organism isolated from paper mill waste. Environ Microbiol 1, 319-329.
8. Cashion, P., Holder-Franklin, M. A., McCully, J. & Franklin, M. (1977). A rapid method for the base ratio determination of bacterial DNA. Anal Biochem 81, 461-466.
9. Coates, J. D., Bruce, R. A., Patrick, J. & Achenbach, L. A. (1999). Hydrocarbon bioremediative potential of (per)chlorate-reducing bacteria. Bioremed J 3, 323-334.
10. Condie, L. (1986). Toxicological problems associated with chlorine dioxide. J Am Water Works Assoc 78, 73-78.
11. Coyle, C. L., Zumft, W. G., Kroneck, P. M. H., Körner, H. & Jakob, W. (1985). Nitrous oxide reductase from denitrifying Pseudomonas perfectomarina. Purification and properties of a novel multicopper enzyme. Eur J Biochem 153, 459-467.
12. De Groot, G. N. & Stouthamer, A. H. (1969). Regulation of reductase formation in Proteus mirabilis. I. Formation of reductases and enzymes of the formic hydrogenase complex in the wild type and in chlorate-resistant mutants. Arch Microbiol 66, 220-233.
13. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
14. Escara, J. F. & Hutton, J. R. (1980). Thermal stability and renaturation of DNA in dimethyl sulfoxide solutions: acceleration of the renaturation rate. Biopolymers 19, 1315-1327.
15. Germgard, U., Teder, A. & Tormund, D. (1981). Chlorate formation during chlorine dioxide bleaching of softwood kraft pulp. Paperi Puu 3, 127-133.
16. Ginard, M., Lalucat, J., Tümmler, B. & Römling, U. (1997). Genome organization of Pseudomonas stutzeri and resulting taxonomic and evolutionary considerations. Int J Syst Bacteriol 47, 132-143.
17. Guasp, C., Moore, E. R. B., Lalucat, J. & Bennasar, A. (2000). Utility of internally transcribed 16S-23S rDNA spacer regions for the definition of Pseudomonas stutzeri genomovars and other Pseudomonas species. Int J Syst Evol Microbiol 50, 1629-1639.
18. Hochstein, L. I. & Tomlinson, G. A. (1988). The enzymes associated with denitrification. Annu Rev Microbiol 42, 231-261.
19. Hungate, R. E. (1969). A roll tube method for cultivation of strict anaerobes. Methods Microbiol 3B, 117-132.
20. Huß, V. A. R., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192.
21. Jahnke, K.-D. (1992). Basic computer program for evaluation of spectroscopic DNA renaturation data from GILFORD System 2600 spectrometer on a PC/XT/AT type personal computer. J Microbiol Methods, 15, 61-73.
22. Kengen, S. W. M., Rikken, G. B., Hagen, W. R., van Ginkel, C. G. & Stams, A. J. M. (1999). Purification and characterization of (per) chlorate reductase from the chlorate-respiring strain GR-1. J Bacteriol 181, 6706-6711.
23. Logan, B. E. (1998). A review of chlorate- and perchlorate-respiring microorganisms. Bioremed J 2, 69-79.
24. Ludwig, W. & Strunk, O. (1996). ARB, a software environment for sequence data. Technische Universität München, Munich, Germany. http://www.mikro.biologie.tu-muenchen.de/pub/ARB
25. Malmqvist, A. T. & Welander, T. (1992). Anaerobic removal of chlorate from bleach effluents. Water Sci Technol 25, 237-242.
26. Malmqvist, A., Welander, T., Moore, E., Ternström, A., Molin, G. & Stenström, I.-M. (1994). Ideonella dechloratans, gen. nov., sp. nov., a new bacterium capable of growing anaerobically with chlorate as an electron acceptor. Syst Appl Microbiol 17, 58-64.
27. Matsubara, T., Frunzke, K. & Zumft, W. G. (1982). Modulation by copper of the products of nitrite respiration in Pseudomonas perfectomarinus. J Bacteriol 149, 816-823.
28. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
29. Oltmann, L. F., Reijnders, W. N. M. & Stouthamer, A. H. (1976). The correlation between the protein composition of cytoplasmic membranes and the formation of nitrate reductase A, chlorate reductase C and tetrathionate reductase in Proteus mirabilis wild type and some chlorate resistant mutants. Arch Microbiol 111, 37-43.
30. Palleroni, N. J., Doudoroff, M., Stanier, R. Y., Solánes, R. E. & Mandel, M. (1970). Taxonomy of the aerobic pseudomonads: the properties of the Pseudomonas stutzeri group. J Gen Microbiol 60, 215-231.
31. Plugge, C. M., Zoetendal, E. G. & Stams, A. J. M. (2000). Caloramotor coolhaasii sp. nov., a glutamate-degrading, moderately thermophilic anaerobe. Int J Syst Evol Microbiol 50, 1155-1162.
32. Rainey, F. A., Ward-Rainey, N., Kroppenstedt, R. M. & Stackebrandt, E. (1996). The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov. Int J Syst Bacteriol 46, 1088-1092.
33. Rikken, G. B., Kroon, A. G. M. & van Ginkel, C. G. (1996). Transformation of (per)chlorate into chloride by a newly isolated bacterium: reduction and dismutation. Appl Microbiol Biotechnol 45, 420-426.
34. Rosselló, R., García-Valdés, E., Lalucat, J. & Ursing, J. (1991). Genotypic and phenotypic diversity of P. stutzeri. Syst Appl Microbiol 14, 150-157.
35. Rosselló-Mora, R., Lalucat, J., Dott, W. & Kämpfer, P. (1994). Biochemical and chemotaxonomic characterization of Pseudomonas stutzeri genomovars. J Appl Bacteriol 76, 226-233.
36. Rosselló-Mora, R., Lalucat, J. & Moore, E. R. B. (1996). Strain JM300 represents a new genomovar within Pseudomonas stutzeri. Syst Appl Microbiol 19, 596-599.
37. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
38. Scholten, J. C. M. & Stams, A. J. M. (1995). The effect of sulfate and nitrate on methane formation in a freshwater sediment. Antonie van Leeuwenhoek 68, 309-315.
39. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
40. Stams, A. J. M., Van Dijk, J. B., Dijkema, C. & Plugge, C. M. (1993). Growth of syntrophic propionate-oxidizing bacteria with fumarate in the absence of methanogenic bacteria. Appl Environ Microbiol 59, 1114-1119.
41. Stanier, R. Y., Palleroni, N. J. & Doudoroff, M. (1966). The aerobic pseudomonads: a taxonomic study. J Gen Microbiol 43, 159-271.
42. Stolp, H. & Gadkari, D. (1981). Nonpathogenic members of the genus Pseudomonas.. In The Prokaryotes, pp. 719-741. Edited by M. P. Starr, H. Stolp, H. G. Trüper, A. Balows & H. G. Schlegel. Berlin: Springer.
43. van Ginkel, C. G., Rikken, G. B., Kroon, A. G. M. & Kengen, S. W. M. (1996). Purification and characterization of chlorite dismutase: a novel oxygen-generating enzyme. Arch Microbiol 166, 321-326.
44. Van Niel, C. B. & Allen, M. B. (1952). A note on Pseudomonas stutzeri. J Bacteriol 64, 413-422.
45. van Wijk, D. J. & Hutchinson, T. H. (1995). The ecotoxicity of chlorate to aquatic organisms: a critical review. Ecotoxicol Environ Saf 32, 244-253.
46. Wallace, W., Ward, T., Breen, A. & Attaway, H. (1996). Identification of an anaerobic bacterium which reduces perchlorate and chlorate as Wolinella succinogenes. J Ind Microbiol 16, 68-72.
47. Wallace, W., Beshear, S., Williams, D., Hospadar, S. & Owens, M. (1998). Perchlorate reduction by a mixed culture in an up-flow anaerobic fixed bed reactor. J Ind Microbiol Biotechnol 20, 126-131.
48. Wolin, E. A., Wolin, M. J. & Wolfe, R. S. (1963). Formation of methane by bacterial extracts. J Biol Chem 238, 2882-2886.
49. Zumft, W. G. (1997). Cell biology and molecular basis of denitrification. Microbiol Mol Biol Rev 61, 533-616.