Dechloromonas hortensis sp. nov. and strain ASK-1, two novel (per)chlorate-reducing bacteria, and taxonomic description of strain GR-1

International Journal of Systematic and Evolutionary Microbiology

Volumn 55, Issue 5, 2005, Pages 2063-2068

  Wolterink, Arthur ^a   Kim, Sungyoun ^b   Muusse, Margje ^a   Kim, In S ^b   Roholl, Paul J M ^c   van Ginkel, Cees G ^d   Stams, Alfons J M ^a   Kengen, Servé W M ^a  

^a WAGENINGEN UNIVERSITY   (Netherlands)

^b Gwangju Institute of Science and Technology (GIST)   (South Korea)

^c NATIONAL INSTITUTE FOR PUBLIC HEALTH AND THE ENVIRONMENT   (Netherlands)

^d AKZO NOBEL CENTRAL RESEARCH   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL RNA; PERCHLORATE; RIBOSOME RNA; RNA 16S;

ARTICLE; BACTERIAL STRAIN; BACTERIUM CULTURE; BACTERIUM ISOLATE; BACTERIUM ISOLATION; DECHLOROMONAS AGITATA; DECHLOROMONAS HORTENSIS; DECHLOROSOMA SUILLUM; DNA DNA HYBRIDIZATION; GENE SEQUENCE; GRAM NEGATIVE BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; PROTEOBACTERIA; PSEUDOMONAS; PSEUDOMONAS CHLORITIDISMUTANS; SEQUENCE ANALYSIS; STRAIN DIFFERENCE; TAXONOMY;

CHLORATES; DNA, BACTERIAL; DNA, RIBOSOMAL; GENES, RRNA; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; OXIDATION-REDUCTION; PERCHLORIC ACID; RHODOCYCLACEAE; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEWAGE; SOIL MICROBIOLOGY; SPECIES SPECIFICITY; WASTE DISPOSAL, FLUID; WATER POLLUTION, CHEMICAL;

AZOSPIRA ORYZAE; BACTERIA (MICROORGANISMS); DECHLOROMONAS; DECHLOROMONAS AGITATA; PROTEOBACTERIA; PSEUDOMONAS CHLORITIDISMUTANS;

EID: 26244452576     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.63404-0     Document Type: Article

References (36)

1. Achenbach, L. A., Michaelidou, U., Bruce, R. A., Fryman, J. & Coates, J. D. (2001). Dechloromonas agitata gen. nov., sp. nov. and Dechlorosoma suillum gen. nov., sp. nov., two novel environmentally dominant (per)chlorate-reducing bacteria and their phylogenetic position. Int J Syst Evol Microbiol 51, 527-533.
2. Bradford, M. M. (1976). A rapid and sensitive method for the quantification of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72, 248-254.
3. Cashion, P., Holder-Franklin, M. A., McCully, J. & Franklin, M. (1977). A rapid method for the base ratio determination of bacterial DNA. Anal Biochem 81, 461-466.
4. Coates, J. D. & Achenbach, L. A. (2004). Microbial perchlorate reduction: rocket-fueled metabolism. Nat Rev Microbiol 2, 569-580.
5. Coates, J. D., Michaelidou, U., Bruce, R. A., O'Connor, S. M., Crespi, J. N. & Achenbach, L. A. (1999). Ubiquity and diversity of dissimilatory (per)chlorate-reducing bacteria. Appl Environ Microbiol 65, 5234-5241.
6. Coyle, C. L., Zumft, W. G., Kroneck, P. M., Kornar, H. & Jakob, W. (1985). Nitrous oxide reductase from denitrifying Pseudomonas perfectomarina. Purification and properties of a novel multicopper enzyme. Eur J Biochem 153, 459-467.
7. Cummings, D. E., Caccavo, F., Jr, Spring, S. & Rosenweig, R. F. (1999). Ferribacterium limneticum, gen. nov., sp. nov., an Fe(III)-reducing microorganism isolated from mining-impacted freshwater lake sediments. Arch Microbiol 171, 183-188.
8. De Ley, L., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
9. Escara, J. F. & Hutton, J. R. (1980). Thermal stability and renaturation of DNA in dimethyl sulfoxide solutions: acceleration of the renaturation rate. Biopolymers 19, 1315-1327.
10. Hungate, R. E. (1969). A roll tube method for cultivation of strict anaerobes. Methods Microbiol 3B, 117-132.
11. Hurek, T. & Reinhold-Hurek, B. (1995). Identification of grass-associated and toluene-degrading diazotrophs, Azoarcus spp., by analyses of partial 16S ribosomal DNA sequences. Appl Environ Microbiol 61, 2257-2261.
12. Huß, V. A. R., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192.
13. Jahnke, K.-D. (1992). Basic computer program for evaluation of spectroscopic DNA renaturation data from Gilford System 2600 spectrometer on a PC/XT/AT type personal computer. J Microbiol Methods 15, 61-73.
14. Kengen, S. W. M., Rikken, G. B., Hagen, W. R., van Ginkel, C. G. & Stams, A. J. M. (1999). Purification and characterization of (per)chlorate reductase from the chlorate-respiring strain GR-1. J Bacteriol 181, 6706-6711.
15. Lovley, D. R. & Phillips, E. J. P. (1987). Rapid assay for microbially reducible ferric iron in aquatic sediments. Appl Environ Microbiol 53, 1536-1540.
16. Ludwig, W. & Strunk, O. (1996). ARB, a software environment for sequence data. http://www.arb-home.de/
17. Matsubara, T., Frunzke, K. & Zumft, W. G. (1982). Modulation by copper of the products of nitrite respiration in Pseudomonas perfectomarinus. J Bacteriol 149, 816-823.
18. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
19. Plugge, C. M., Zoetendal, E. G. & Stams, A. J. M. (2000). Caloramator coolhaasii sp. nov., a glutamate-degrading, moderately thermophilic anaerobe. Int J Syst Evol Microbiol 50, 1155-1162.
20. Rainey, F. A., Ward-Rainey, N., Kroppenstedt, R. M. & Stackebrandt, E. (1996). The genus Nocardiopsis represents a phylogenetically coherent taxon and distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov. Int J Syst Bacteriol 46, 1088-1092.
21. Reinhold-Hurek, B. & Hurek, T. (2000). Reassessment of the taxonomic structure of the diazotrophic genus Azoarcus sensu lato and description of three new genera and new species, Azovibrio restrictus gen. nov., sp. nov., Azospira oryzae gen. nov., sp. nov. and Azonexus fungiphilus gen. nov., sp. nov. Int J Syst Evol Microbiol 50, 649-659.
22. Renner, R. (1998). Perchlorate-tainted wells spur government action. Environ Sci Technol 32, 210A.
23. Rikken, G. B., Kroon, A. G. M. & van Ginkel, C. G. (1996). Transformation of (per)chlorate into chloride by a newly isolated bacterium: reduction and dismutation. Appl Microbiol Biotechnol 45, 420-426.
24. Scholten, J. C. M. & Stams, A. J. M. (1995). The effect of sulfate and nitrate on methane formation in a freshwater sediment. Antonie van Leeuwenhoek 68, 309-315.
25. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
26. Stams, A. J. M., van Dijk, J. B., Dijkema, C. & Plugge, C. M. (1993). Growth of syntrophic propionate-oxidizing bacteria with fumarate in the absence of methanogenic bacteria. Appl Environ Microbiol 59, 1114-1119.
27. Stepanyuk, V. V., Smirnova, G. F., Kiyushnikova, T. M., Kanyuk, N. I., Panchenko, L. P., Nogina, T. M. & Prima, V. I. (1992). New species of the Acinetobacter genus, Acinetobacter thermotoleranticus, sp. nov. Mikrobiologiia 61, 490-500 (in Russian).
28. Tan, Z. & Reinhold-Hurek B. (2003). Dechlorosoma suillum Achenbach et al. 2001 is a later subjective synonym of Azospira oryzae Reinhold-Hurek and Hurek 2000. Int J Syst Evol Microbiol 53, 1139-1142.
29. Thalen, M., van de IJsel, J., Jiskoot, W., Zomer, B., Roholl, P. J. M., de Gooijer, C., Beuvery, C. & Tramper, J. (1999). Rational medium design for Bordetella pertussis: basic metabolism. J Biotechnol 75, 147-159.
30. Urbansky, E. T. (1998). Perchlorate chemistry: implications for analysis and remediation. Bioremediat J 2, 81-95.
31. Urbansky, E. T. (2002). Perchlorate as an environmental contaminant. Environ Sci Pollut Res Int 9, 187-192.
32. US Environmental Protection Agency (2000). The effect of ammonium perchlorate on thyroids. Pathology Working Group Report. Washington, DC: National Center for Environmental Assessment, US EPA. http://cfpub.epa.gov/ncea/cfm/recordisplay.cfm?deid=15262
33. van Ginkel, C. G., Plugge, C. M. & Stroo, C. A. (1995). Reduction of chlorate with various energy substrates and inocula under anaerobic conditions. Chemosphere 31, 4057-4066.
34. van Ginkel, C. G., Rikken, G. B., Kroon, A. G. M. & Kengen, S. W. M. (1996). Purification and characterization of chlorite dismutase: a novel oxygen-generating enzyme. Arch Microbiol 166, 321-326.
35. Wolterink, A. F. W. M., Jonker, A. B., Kengen, S. W. M. & Stams, A. J. M. (2002). Pseudomonas chloritidismutans sp. nov., a nondenitrifying, chlorate-reducing bacterium. Int J Syst Evol Microbiol 52, 2183-2190.
36. Wu, J., Unz, R. F., Zhang, H. & Logan, B. E. (2001). Persistence of perchlorate and the relative numbers of perchlorate- and chlorate-respiring microorganisms in natural waters, soils, and wastewater. Bioremediat J 5, 119-130.