Orientation determination in single-particle x-ray coherent diffraction imaging experiments

Journal of Physics B: Atomic, Molecular and Optical Physics

Volumn 46, Issue 16, 2013, Pages

  Yefanov, O M ^a,b,d   Vartanyants, I A ^a,c  

^a DESY   (Germany)

^b INSTITUTE OF SEMICONDUCTOR PHYSICS   (Ukraine)

^c NATIONAL RESEARCH NUCLEAR UNIVERSITY MEPHI   (Russian Federation)

^d Center for Free Electron Laser Science   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ARTIFICIAL PROTEINS; BIOLOGICAL SAMPLES; BIOLOGICAL SPECIMENS; COHERENT DIFFRACTION IMAGING; DIFFRACTION IMAGING; ICOSAHEDRAL SYMMETRY; SIMULTANEOUS ANALYSIS; STRUCTURE DETERMINATION;

ALGORITHMS; ATOMS; DATA HANDLING; FREE ELECTRON LASERS; IMAGING SYSTEMS; INTERFEROMETRY; PHOTONS; VIRUSES;

DIFFRACTION PATTERNS;

EID: 84883205012     PISSN: 09534075     EISSN: 13616455     Source Type: Journal    
DOI: 10.1088/0953-4075/46/16/164013     Document Type: Article

References (43)

1. Yefanov O, Vartanyants I and Weckert E 2010 Photon Science - HASYLAB Annual Report (http://photon-science.desy.de/annual-report/files/2010/20101462. pdf)
2. Drenth J 2007 Principles of Protein X-Ray Crystallography (Berlin: Springer)
3. Beck M, Luccic V, Foerster F, Baumeister W and Medalia O 2007 Nature 449 611 (Pubitemid 47525150)
4. Ayache J, Beaunier L, Boumendil J, Ehret G and Laub D 2010 Sample Preparation Handbook for Transmission Electron Microscopy (Berlin: Springer)
5. Neutze R, Wouts R, van der Spoel D, Weckert E and Hajdu J 2000 Nature 406 752
6. Gaffney K J and Chapman H N 2007 Science 316 1444 (Pubitemid 46906604)
7. Mancuso A P, Yefanov O M and Vartanyants I A 2010 J. Biotechnol. 149 229
8. Ackermann W et al 2007 Nature Photon. 1 336
9. Emma P et al 2010 Nature Photon. 4 641
10. Ishikawa T et al 2012 Nature Photon. 6 540
11. Altarelli M et al 2006 XFEL: The European x-ray Free-Electron Laser DESY Technical Design Report DESY 2006-097 (http://xfel.desy.de/technical- information/tdr/tdr/)
12. Howells M et al 2009 J. Electron Spectrosc. Relat. Phenom. 170 4
13. Quiney H M and Nugent K A 2011 Nature Phys. 7 142
14. Lorenz U, Kabachnik N M, Weckert E and Vartanyants I A 2012 Phys. Rev. E 86 051911
15. Barty A et al 2012 Nature Photon. 6 35
16. Bergh M, Huldt G, Timneanu N, Maia F R N C and Hajdu J 2008 Q. Rev. Biophys. 41 181
17. Vartanyants I A and Robinson I K 2001 J. Phys.: Condens. Matter 13 10593 (Pubitemid 34002786)
18. Vartanyants I A and Robinson I K 2003 J. Synchrotron Radiat. 10 409
19. Williams G J, Quiney H M, Peele A G and Nugent K A 2007 Phys. Rev. B 75 104102
20. Fienup J R 1982 Appl. Opt. 21 2758
21. Marchesini S 2007 Rev. Sci. Instrum. 78 011301 (Pubitemid 46521489)
22. Seibert M M et al 2011 Nature 470 78
23. Kassemeyer S et al 2012 Opt. Express 20 4149
24. Loh N D et al 2012 Nature 486 513
25. Loh N D et al 2010 Phys. Rev. Lett. 104 225501
26. Huldt G, Szoke A and Hajdu J 2003 J. Struct. Biol. 144 219 (Pubitemid 37474240)
27. Vainshtein B K and Goncharov A B 1986 Sov. Phys. Dokl. 287 278
28. Vainshtein B K and Goncharov A B 1986 Proc. 11th Int. Congr. on Electron Mircoscopy (Kyoto,) ed T Imura, S Mause and T Suzuki (Tokyo: Japan Society of Electron Microscopy) p 459
29. van Heel M 1987 Ultramicroscopy 21 111 (Pubitemid 17018207)
30. Bortel G, Faigel G and Tegze M 2009 J. Struct. Biol. 166 226
31. Fung R, Shneerson V, Saldin D and Ourmazd A 2009 Nature Phys. 5 64
32. Schwander P, Fung R, Phillips G and Ourmazd A 2010 New J. Phys. 12 134
33. Loh N-T D and Elser V 2009 Phys. Rev. E 80 026705
34. Als-Nielsen J and McMorrow D 2011 Elements of Modern X-Ray Physics 2nd edn (New York: Wiley)
35. Landau L D and Lifshitz E M 1976 Mechanics 3rd edn (Oxford: Butterworth-Heinemann)
36. Yefanov O, Dronyak R, Barty A, Chapman H, Hajdu J and Vartanyants I 2011 unpublished
37. Mancuso A et al 2009 Phys. Rev. Lett. 102 035502
38. RCSB Protein Data Bank (www.rcsb.org)
39. Wang F, Weckert E, Ziaja B, Larsson D S D and van der Spoel D 2011 Phys. Rev. E 83 031907
40. Strüder L et al 2010 Nucl. Instrum. Methods Phys. Res. A 614 483
41. Hromalik M S, Green K S, Philipp H T, Tate M W and Gruner S M 2013 Nucl. Instrum. Methods Phys. Res. A 701 716
42. Wolfram Research (www.wolfram.com)
43. Yefanov O M, Zozulya A V, Vartanyants I A, Stangl J, Mocuta C, Metzger T H, Bauer G, Boeck T and Schmidbauer M 2009 Appl. Phys. Lett. 94 123104