Diffraction imaging of single particles and biomolecules

Journal of Structural Biology

Volumn 144, Issue 1-2, 2003, Pages 219-227

  Huldt, G ^a   Szoke, A ^a,b   Hajdu, J ^a  

^a UPPSALA UNIVERSITY   (Sweden)

^b LAWRENCE LIVERMORE NATIONAL LABORATORY   (United States)

Author keywords

3D reconstruction; Averaging; Image classification; Orientation; Single molecule diffraction; Single particle diffraction

Indexed keywords

ARTICLE; CLASSIFICATION; DATA ANALYSIS; DIFFRACTION; IMAGE ANALYSIS; INFORMATION PROCESSING; MACROMOLECULE; NOISE; PARTICLE SIZE; PHOTON; POISSON DISTRIBUTION; PRIORITY JOURNAL; SAMPLE; SIGNAL PROCESSING; STATISTICAL ANALYSIS; STRUCTURE ANALYSIS; TECHNIQUE; X RAY;

EID: 0345305377     PISSN: 10478477     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jsb.2003.09.025     Document Type: Article

References (27)

1. Bertero M., Boccaci P. Inverse Problems in Imaging. 1998;IOP Publishing, Bristol.
2. Bottcher B., Wynne S.A., Crowther R.A. Determination of the fold of the core protein of hepatitis B virus by electron cryomicroscopy. Nature. 386:1997;88-91.
3. Ewald, P.P., 1921. Kristallogr. Z., 129-156.
4. Frank J. Three-Dimensional Electron Microscopy of Macromolecular Assemblies. 1996;Academic Press, San Diego.
5. Gerchberg R.W., Saxton W.O. A practical algorithm for the determination of phase from image and diffraction plane pictures. Optik. 35:1972;237-246.
6. Golub G.H., van Loan C.F. Matrix Computations. third ed. 1996;The Jason Hopkins Univ. Pr. Baltimore.
7. Goodman, J.W., 2000. Statistical Optics, John Wiley & Sons, Inc., reprint.
8. Jerri A.J. The Shannon sampling theorem - its various extensions and applications: a tutorial review. Proc. IEEE. 65(11):1977;1292-1304.
9. Miao J., Hodgson K., Sayre D. An approach to three-dimensional structures of biomolecules by using single-molecule diffraction images. Proc. Natl. Acad. Sci. USA. 98(12):2001;6641-6645.
10. Miao J., Ishikawa T., Johnson B., Anderson E.H., Lai B., Hodgson K.O. High resolution 3D X-ray diffraction microscopy. Phys. Rev. 89:2002;088303.
11. Mueller F., Sommer I., Baranov P., Matadeen R., Stoldt M., Wohnert J., Gorlach M., van Heel M., Brimacombe R. The 3D arrangement of the 23 S and 5 S rRNA in the Escherichia coli 50 S ribosomal subunit based on a cryo-electron microscopic reconstruction at 7.5. Å resolution J. Mol. Biol. 298:2000;35-39.
12. Natterer F. The Mathematics of Computerized Tomography. 1986;Wiley, New York.
13. Nattter F., Wübbeling F. Mathematical Methods in Image Reconstruction. 2001;Society for Industrial and Applied Mathematics, Philadelphia.
14. Neutze R., Wouts R., van der Spoel D., Weckert E., Hajdu J. Potential for femtosecond imaging of biomolecules with X-rays. Nature. 406:2000;752-757.
15. Papoulis A. Probability, Random Variables and Stochastic Processes. third ed. Electrical & Electronic Engineering Series. 1991;McGraw-Hill.
16. Saxton W.O., Frank J. Motif detection in quantum noise-limited electron micrographs by cross-correlation. Ultramicroscopy. 2:1977;219-227.
17. Sayre D. Schlenker M.et al. Imaging Processes and Coherence in Physics. Springer Lecture Notes in Physics. vol. 112:1980;229-235 Springer-Verlag, Berlin.
18. Shmueli U. International Tables for Crystallography. Reciprocal Space. vol. B:1996;Kluwer Academic Publishers, Dordrecht.
19. Stowell M.H.B., Miyazawa A., Unwin N. Macromolecular structure determination by electron microscopy: new advances and recent results. Curr. Opin. Struct. Biol. 8:1998;595-600.
20. Szoke A. Holography with a complicated reference. J. Imag. Sci. Technol. 41:1997;332-341.
21. Szoke A. Time-resolved holographic diffraction at atomic resolution. Chem. Phys. Lett. 313:1999;777-788.
22. van Heel M. Angular reconstitution: a posteriori assignment of projection directions for 3D reconstruction. Ultramicroscopy. 21:1987;111-124.
23. van Heel M., Harauz G., Orlova E.V., Schmidt R., Schatz M. A new generation of the IMAGIC image processing system. J. Struct. Biol. 116:1996;17-24.
24. van Heel M., Orlova E.V., Harauz G., Stark H., Dube P., Zemlin F., Schatz M. Angular reconstitution in three-dimensional electron microscopy. Historical and theoretical aspects. Scanning Microsc. 11:1997;195-210.
25. van Heel M., Gowen B., Matadeen R., Orlova E.V., Finn R., Pape T., Cohen D., Stark H., Schmidt R., Schatz M., Patwardhan A. Single-particle electron cryo-microscopy: towards atomic resolution. Quart. Rev. Biophys. 33:2000;269-307.
26. Wilson A.J.C. The probability distribution of X-ray intensities. Acta Cryst. 2:1949;318-321.
27. Wilson A.J.C. International Tables for Crystallography. Mathematical, Physical and Chemical Tables. vol. C:1995;Kluwer Academic Publishers, Dordrecht.