Single mimivirus particles intercepted and imaged with an X-ray laser

Nature

Volumn 470, Issue 7332, 2011, Pages 78-82

  Seibert, M Marvin ^a   Ekeberg, Tomas ^a   Maia, Filipe R N C ^a   Svenda, Martin ^a   Andreasson, Jakob ^a   Jönsson, Olof ^a   Odić, Duško ^a   Iwan, Bianca ^a   Rocker, Andrea ^a   Westphal, Daniel ^a   Hantke, Max ^a   Deponte, Daniel P ^b   Barty, Anton ^b   Schulz, Joachim ^b   Gumprecht, Lars ^b   Coppola, Nicola ^b   Aquila, Andrew ^b   Liang, Mengning ^b   White, Thomas A ^b   Martin, Andrew ^b   Caleman, Carl ^a,b   Stern, Stephan ^b,c   Abergel, Chantal ^d   Seltzer, Virginie ^d   Claverie, Jean Michel ^d   Bostedt, Christoph ^e   Bozek, John D ^e   Boutet, Sébastien ^e   Miahnahri, A Alan ^e   Messerschmidt, Marc ^e   Krzywinski, Jacek ^e   Williams, Garth ^e   Hodgson, Keith O ^e   Bogan, Michael J ^e   Hampton, Christina Y ^e   Sierra, Raymond G ^e   Starodub, Dmitri ^e   Andersson, Inger ^f   Bajt, Sǎa ^b   Barthelmess, Miriam ^b   Spence, John C H ^g   Fromme, Petra ^g   Weierstall, Uwe ^g   Kirian, Richard ^g   Hunter, Mark ^g   Doak, R Bruce ^g   Marchesini, Stefano ^h   Hau Riege, Stefan P ⁱ   Frank, Matthias ⁱ   Shoeman, Robert L ^j   Lomb, Lukas ^j   Epp, Sascha W ^k,l   Hartmann, Robert ^m   Rolles, Daniel ^j,k   Rudenko, Artem ^k,l   Schmidt, Carlo ^k,l   Foucar, Lutz ^j,k   Kimmel, Nils ^n,o   Holl, Peter ^m   Rudek, Benedikt ^k,l   Erk, Benjamin ^k,l   Hömke, André ^k,l   Reich, Christian ^m   Pietschner, Daniel ^n,o   Weidenspointner, Georg ^n,o   Strüder, Lothar ^k,n,o,p   Hauser, Günter ^n,o   Gorke, Hubert ^q   Ullrich, Joachim ^k,l   Schlichting, Ilme ^j,k   Herrmann, Sven ^n,o   Schaller, Gerhard ^n,o   Schopper, Florian ^n,o   Soltau, Heike ^m   Kühnel, Kai Uwe ^l   Andritschke, Robert ^n,o   Schröter, Claus Dieter ^l   Krasniqi, Faton ^j,k   Bott, Mario ^j   Schorb, Sebastian ^r   Rupp, Daniela ^r   Adolph, Marcus ^r   Gorkhover, Tais ^r   Hirsemann, Helmut ^b   Potdevin, Guillaume ^b   Graafsma, Heinz ^b   Nilsson, Björn ^b   Chapman, Henry N ^b,c   Hajdu, Janos ^a   more..

^a UPPSALA UNIVERSITY   (Sweden)

^b DESY   (Germany)

^c UNIVERSITY OF HAMBURG   (Germany)

^d CNRS Aix Marseille University   (France)

^e SLAC NATIONAL ACCELERATOR LABORATORY   (United States)

^f SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

^g ARIZONA STATE UNIVERSITY   (United States)

^h LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

ⁱ LAWRENCE LIVERMORE NATIONAL LABORATORY   (United States)

^j MAX PLANCK INSTITUTE FOR MEDICAL RESEARCH   (Germany)

^k Center for Free Electron Laser Science   (Germany)

^l MAX PLANCK INSTITUT FÜR KERNPHYSIK   (Germany)

^m PNSENSOR GMBH   (Germany)

ⁿ MPI HALBLEITERLABOR   (Germany)

^o MAX PLANCK INSTITUT FÜR EXTRATERRESTRISCHE PHYSIK   (Germany)

^p UNIVERSITY OF SIEGEN   (Germany)

^q FORSCHUNGSZENTRUM JÜLICH   (Germany)

^r TECHNISCHE UNIVERSITÄT BERLIN   (Germany)

more..

Author keywords

[No Author keywords available]

Indexed keywords

DATA SET; EXPERIMENTAL STUDY; IMAGE ANALYSIS; LASER; PLASMA; RECONSTRUCTION; VIRUS; X-RAY DIFFRACTION;

ARTICLE; IMAGE RECONSTRUCTION; MACROMOLECULE; MIMIVIRUS; NONHUMAN; PHOTON; PRIORITY JOURNAL; VIRION; VIRUS PARTICLE; X RAY;

MIMIVIRUS;

EID: 79551667263     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature09748     Document Type: Article

References (34)

1. Neutze, R. etal. Potential for biomolecular imaging with femtosecond X-ray pulses. Nature 406, 752-757 (2000).
2. Chapman, H. N. et al. Femtosecond diffractive imaging with a soft-X-ray free-electron laser. Nature Phys. 2, 839-843 (2006).
3. Bergh, M. et al. Feasibility of imaging living cells at sub-nanometer resolution by ultrafast X-ray diffraction. Q. Rev. Biophys. 41, 181-204 (2008).
4. Nagler, B. et al. Turning solid aluminium transparent by intense soft X-ray photoionization. Nature Phys. 5, 693-696 (2009).
5. Emma, P.et al. First lasing and operation of an angstrom-wavelength free-electron laser. Nature Photon. 4, 641-647 (2010).
6. La Scola, B. et al. A giant virus in amoebae. Science 299, 2033 (2003).
7. Xiao, C. et al. Structural studies of the giant mimivirus. PLoS Biol. 7, E1000092 (2009).
8. Claverie, J. M. & Abergel, C. Mimivirus and its virophage. Annu. Rev. Genet. 43, 49-66 (2009).
9. Raoult, D. et al. The 1.2-megabase genome sequence of mimivirus. Science 306, 1344-1350 (2004).
10. La Scola, B.et al. The virophage as a unique parasite ofthe giant mimivirus. Nature 455, 100-104, (2008).
11. Claverie, J. M. & Abergel, C. Mimivirus: the emerg in gparadox of quasi-autonomous viruses. Trends Genet. 26, 431-437 (2010).
12. Strü der, L. et al. Large-format, High-speed, X-ray pnCCDs combined with electron andion imaging spectrometers in amultipurpose chamber for experimentsat4th generationlightsources. Nucl.Instrum. MethodsPhys.Res.A614, 483-496(2010).
13. Bozek, J. D. AMO instrumentation for the LCLS X-ray FEL. Eur. Phys. J. Spec. Top. 169, 129-132 (2009).
14. DePonte, D. P. et al. Gas dynamic virtual nozzle for generation of microscopic droplet streams. J. Phys. D 41, 195505 (2008).
15. Bogan, M. J. et al. Single particle X-ray diffractive imaging. Nano Lett. 8, 310-316 (2008).
16. Maia, F. R. N. C., Ekeberg, T., Van der Spoel, D. & Hajdu, J. Hawk: the image reconstruction package for coherent X-ray diffractive imaging. J. Appl. Crystallogr. 43, 1535-1539 (2010).
17. Luke, D. R. Relaxed averaged alternating reflections for diffraction imaging. Inverse Probl. 21, 37-50 (2005).
18. Marchesini, S. et al. X-ray image reconstruction from a diffraction pattern alone. Phys. Rev. B 68, 140101 (2003).
19. Thibault, P., Elser, V., Jacobsen, C., Shapiro, D.& Sayre, D.Reconstructionof a yeast cell from X-ray diffraction data. Acta Crystallogr. A 62, 248-261 (2006).
20. Shapiro, D. et al. Biological imaging by soft X-ray diffraction microscopy. Proc. Natl Acad. Sci. USA 102, 15343-15346 (2005).
21. Ding, Y. et al. Measurements and simulations of ultralow emittance and ultrashort electron beams in the Linac Coherent Light Source. Phys. Rev. Lett. 102, 254801 (2009).
22. Young, L. et al. Femtosecond electronic response of atoms to ultra-intense X-rays. Nature 466, 56-61 (2010).
23. Hau-Riege, S. P. et al. A sacrificial tamper slows down sample explosion in flash diffraction experiments. Phys. Rev. Lett. 104, 064801 (2010).
24. Chapman, H. N. et al. Femtosecond X-ray protein nanocrystallography. Nature doi:10.1038/nature09750 (this issue).
25. Huldt, G., Szoke, A. & Hajdu, J. Diffraction imaging of single particles and biomolecules. J. Struct. Biol. 144, 219-227 (2003).
26. Fung, R. et al. Structure from fleeting illumination offaint spinning objects in flight. Nature Phys. 5, 64-67 (2009).
27. Loh, N. T. D. & Elser, V. Reconstruction algorithm for single-particle diffraction imaging. Phys. Rev. E 80, 026705 (2009).
28. Bortel, G., Faigel, G. & Tegze, M.Classification and averaging of random orientation single macromolecular diffraction patternsatatomic resolution.J.Struct. Biol. 166, 226-233 (2009).
29. Maia, F. R. N. C., Ekeberg, T., Tmneanu, N., Van Der Spoel, D. & Hajdu, J. Structural variability and the incoherent addition of scattered intensities in single-particle diffraction. Phys. Rev. E 80, 031905 (2009).
30. Perkins, T. T., Smith, D. E. & Chu, S. Single polymer dynamics in an elongated flow. Science 276, 2016-2021 (1997).
31. Song, C. et al. Quantitative imaging of single, Unstained viruses with coherent X rays. Phys. Rev. Lett. 101, 158101 (2008).
32. Byrne, D. et al. The polyadenylation site of Mimivirus transcripts obeys a stringent 'hairpin rule'. Genome Res. 19, 1233-1242 (2009).
33. Steinbrener, J. et al. Data preparation and evaluation techniques for X-ray diffraction microscopy. Opt. Express 18, 18598-18614 (2010).
34. Seibert, M. M. et al. Femtosecond diffractive imaging of biological cells. J. Phys. At. Mol. Opt. Phys. 43, 194015 (2010).