Impact of ultrafast electronic damage in single-particle x-ray imaging experiments

Physical Review E - Statistical, Nonlinear, and Soft Matter Physics

Volumn 86, Issue 5, 2012, Pages

  Lorenz, U ^a   Kabachnik, N M ^b,c   Weckert, E ^a   Vartanyants, I A ^a,d  

^a DESY   (Germany)

^b MOSCOW STATE UNIVERSITY   (Russian Federation)

^c EUROPEAN XFEL GMBH   (Germany)

^d NATIONAL RESEARCH NUCLEAR UNIVERSITY MEPHI   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL SAMPLES; COHERENT X-RAY DIFFRACTION; ELECTRONIC DAMAGES; ELECTRONIC DYNAMICS; FEMTOSECOND TIME SCALE; FLUENCES; HIGH INTENSITY; SINGLE-PARTICLE; SINGLE-SHOT; ULTRA-FAST; X RAY PULSE; X-RAY FREE ELECTRON LASERS; XRAY IMAGING;

DIFFRACTION PATTERNS; INTERFEROMETRY; PHOTODEGRADATION; X RAY DIFFRACTION;

IMAGING SYSTEMS;

EID: 84870659938     PISSN: 15393755     EISSN: 15502376     Source Type: Journal    
DOI: 10.1103/PhysRevE.86.051911     Document Type: Article

References (36)

1. C. Giacovazzo (ed.), Fundamentals of Crystallography (Oxford University Press, Oxford, UK, 2011).
2. M. M. Woolfson and F. Hai-Fu, Physical and Non-Physical Methods of Solving Crystal Structures (Cambridge University Press, Cambridge, UK, 1995).
3. M. R. Howells, T. Beetz, H. N. Chapman, C. Cui, J. M. Holton, C. J. Jacobsen, J. Kirz, E. Lima, S. Marchesini, H. Miao, J. Electron Spectrosc. Relat. Phenom. JESRAW 0368-2048 10.1016/j.elspec.2008.10.008 170, 4 (2009).
4. R. Neutze, R. Wouts, D. van der Spoel, E. Weckert, and J. Hajdu, Nature NATUAS 0028-0836 10.1038/35021099 406, 752 (2000).
5. P. Emma, R. Akre, J. Arthur, R. Bionta, C. Bostedt, J. Bozek, A. Brachmann, P. Bucksbaum, R. Coffee, F. J. Decker, Nat. Photon. 1749-4885 10.1038/nphoton.2010.176 4, 641 (2010).
6. T. Ishikawa, H. Aoyagi, T. Asaka, Y. Asano, N. Azumi, T. Bizen, H. Ego, K. Fukami, T. Fukui, Y. Furukawa, Nat. Photon. 1749-4885 10.1038/nphoton.2012. 141 6, 540 (2012).
7. M. Altarelli, R. Brinkmann, M. Chergui, W. Decking, B. Dobson, S. Düsterer, G. Grübel, W. Graeff, H. Graafsma, J. Hajdu (eds.), The European X-Ray Free-Electron Laser Technical Design Report, DESY 2006-097, 2006, http://xfel.desy.de/technical-information/tdr/tdr/.
8. K. J. Gaffney and H. N. Chapman, Science SCIEAS 0036-8075 10.1126/science.1135923 316, 1444 (2007). (Pubitemid 46906604)
9. A. P. Mancuso, O. M. Yefanov, and I. A. Vartanyants, J. Biotechnology 0168-1656 10.1016/j.jbiotec.2010.01.024 149, 229 (2010).
10. R. Fung, V. Shneerson, D. K. Saldin, and A. Ourmazd, Nat. Phys. 1745-2473 10.1038/nphys1129 5, 64 (2009).
11. Ne-Te Duane Loh and V. Elser, Phys. Rev. E PLEEE8 1539-3755 10.1103/PhysRevE.80.026705 80, 026705 (2009).
12. G. Bortel and M. Tegze, Acta Crystallogr. Sect. A ACACEQ 0108-7673 10.1107/S0108767311036269 67, 533 (2011).
13. J. R. Fienup, Appl. Opt. APOPAI 0003-6935 10.1364/AO.21.002758 21, 2758 (1982).
14. V. Elser, J. Opt. Soc. Am. A 1084-7529 10.1364/JOSAA.20.000040 20, 40 (2003).
15. H. N. Chapman, P. Fromme, A. Barty, T. A. White, R. A. Kirian, A. Aquila, M. S. Hunter, J. Schulz, D. P. DePonte, U. Weierstall, Nature NATUAS 0028-0836 10.1038/nature09750 470, 73 (2011).
16. M. M. Seibert, T. Ekeberg, F. R. N. C. Maia, M. Svenda, J. Andreasson, O. Jonsson, D. Odic, B. Iwan, A. Rocker, D. Westphal, Nature NATUAS 0028-0836 10.1038/nature09748 470, 78 (2011).
17. N. Rohringer and R. Santra, Phys. Rev. A PLRAAN 1050-2947 10.1103/PhysRevA.76.033416 76, 033416 (2007). (Pubitemid 47510031)
18. L. Young, E. P. Kanter, B. Krässig, Y. Li, A. M. March, S. T. Pratt, R. Santra, S. H. Southworth, N. Rohringer, L. F. DiMauro, Nature NATUAS 0028-0836 10.1038/nature09177 466, 56 (2010).
19. S. P. Hau-Riege, R. A. London, and A. Szoke, Phys. Rev. E PLEEE8 1539-3755 10.1103/PhysRevE.69.051906 69, 051906 (2004).
20. S. P. Hau-Riege, R. A. London, G. Huldt, and H. N. Chapman, Phys. Rev. E PLEEE8 1539-3755 10.1103/PhysRevE.71.061919 71, 061919 (2005).
21. S. P. Hau-Riege, R. A. London, H. N. Chapman, A. Szoke, and N. Timneanu, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.98.198302 98, 198302 (2007). (Pubitemid 47139474)
22. H. M. Quiney and K. A. Nugent, Nat. Phys. 1745-2473 10.1038/nphys1859 7, 142 (2011).
23. S. P. Hau-Riege, Opt. Express OPEXFF 1094-4087 10.1364/OE.16.002840 16, 2840 (2008). (Pubitemid 351293506)
24. S.-K. Son, L. Young, and R. Santra, Phys. Rev. A PLRAAN 1050-2947 10.1103/PhysRevA.83.033402 83, 033402 (2011).
25. G. Doumy, C. Roedig, S. K. Son, C. I. Blaga, A. D. DiChiara, R. Santra, N. Berrah, C. Bostedt, J. D. Bozek, P. H. Bucksbaum, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.106.083002 106, 083002 (2011).
26. M. Hoener, L. Fang, O. Kornilov, O. Gessner, S. T. Pratt, M. Gühr, E. P. Kanter, C. Blaga, C. Bostedt, G. D. Bozek, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.104.253002 104, 253002 (2010).
27. S. P. Hau-Riege, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett. 108.238101 108, 238101 (2012).
28. M. Bergh, G. Huldt, N. Tîmneanu, F. R. Maia, and J. Hajdu, Q. Rev. Biophys. QURBAW 0033-5835 10.1017/S003358350800471X 41, 181 (2008).
29. A. Barty, C. Caleman, A. Aquila, N. Timneanu, L. Lomb, T. A. White, J. Andreasson, D. Arnlund, S. Bajt, T. R. M. Barends, Nat. Photon. 1749-4885 10.1038/nphoton.2011.297 6, 35 (2012).
30. G. Geloni, V. Kocharyan, and E. Saldin, Technical Report DESY 10-108, 2010.
31. L. Mandel and E. Wolf, Optical Coherence and Quantum Optics (Cambridge University Press, Cambridge, UK, 1995).
32. A. Singer and I. A. Vartanyants, New J. Phys. NJOPFM 1367-2630 10.1088/1367-2630/12/3/035004 12, 035004 (2010).
33. C. Zubieta, L. Blanchoin, and S. Cusack, FEBS J. 1742-464X 10.1111/j.1742-4658.2006.05430.x 273, 4336 (2006). (Pubitemid 44326512)
34. J. Als-Nielsen and D. McMorrow, Elements of Modern X-ray Physics, 2nd ed. (Wiley, New York, 2011).
35. F. Herman and S. Skillman, Atomic Structure Calculations (Prentice-Hall, Englewood Cliffs, NJ, 1963).
36. Y.-K. Kim, K. K. Irikura, M. E. Rudd, M. A. Ali, P. M. Stone, J. Chang, J. S. Coursey, R. A. Dragoset, A. R. Kishore, K. J. Olsen, NIST electron-impact cross section database http://www.nist.gov/pml/data/ionization/index.cfm.