-
2
-
-
8644255915
-
Homing endonuclease genes: The rise and fall and rise again of a selfish element
-
Burt A, Koufopanou V. (2004). Homing endonuclease genes: The rise and fall and rise again of a selfish element. Curr Opin Genet Dev 14: 609-615
-
(2004)
Curr Opin Genet Dev
, vol.14
, pp. 609-615
-
-
Burt, A.1
Koufopanou, V.2
-
4
-
-
63349093773
-
Detection of inteins among diverse DNA polymerase genes of uncultivated members of the Phycodnaviridae
-
Culley AI, Asuncion BF, Steward GF. (2009). Detection of inteins among diverse DNA polymerase genes of uncultivated members of the Phycodnaviridae. ISME J 3: 409-418
-
(2009)
ISME J
, vol.3
, pp. 409-418
-
-
Culley, A.I.1
Asuncion, B.F.2
Steward, G.F.3
-
5
-
-
77957025820
-
Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton
-
Cuvelier ML, Allen AE, Monier A, McCrow JP, Messié M, Tringe SG et al. (2010). Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton. Proc Natl Acad Sci USA 107: 14679-14684
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 14679-14684
-
-
Cuvelier, M.L.1
Allen, A.E.2
Monier, A.3
McCrow, J.P.4
Messié, M.5
Tringe, S.G.6
-
6
-
-
79954529507
-
ProtTest 3: Fast selection of best-fit models of protein evolution
-
Darriba D, Taboada GL, Doallo R, Posada D. (2011). ProtTest 3: Fast selection of best-fit models of protein evolution. Bioinformatics 27: 1164-1165
-
(2011)
Bioinformatics
, vol.27
, pp. 1164-1165
-
-
Darriba, D.1
Taboada, G.L.2
Doallo, R.3
Posada, D.4
-
7
-
-
79959578913
-
Global distribution patterns of distinct clades of the photosynthetic picoeukaryote Ostreococcus
-
Demir-Hilton E, Sudek S, Cuvelier ML, Gentemann C, Zehr JP, Worden AZ. (2011). Global distribution patterns of distinct clades of the photosynthetic picoeukaryote Ostreococcus. ISME J 5: 1095-1107
-
(2011)
ISME J
, vol.5
, pp. 1095-1107
-
-
Demir-Hilton, E.1
Sudek, S.2
Cuvelier, M.L.3
Gentemann, C.4
Zehr, J.P.5
Worden, A.Z.6
-
8
-
-
79955031925
-
PRP8, the pivotal protein of the spliceosomal catalytic center, evolved from a retroelement-encoded reverse tranascriptase
-
Dlakic M, Mushegian A. (2012). PRP8, the pivotal protein of the spliceosomal catalytic center, evolved from a retroelement-encoded reverse tranascriptase. RNA 17: 799-808
-
(2012)
RNA
, vol.17
, pp. 799-808
-
-
Dlakic, M.1
Mushegian, A.2
-
9
-
-
80055082271
-
Accelerated profile HMM searches
-
Eddy SR. (2011). Accelerated profile HMM searches. PLoS Comput Biol 7: E1002195
-
(2011)
PLoS Comput Biol
, vol.7
-
-
Eddy, S.R.1
-
10
-
-
3042666256
-
Muscle: Multiple sequence alignment with high accuracy and high throughput
-
Edgar RC. (2004). Muscle: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
12
-
-
75549090603
-
The Pfam protein families database
-
Finn RD, Mistry J, Tate J, Coggill P, Heger A, Pollington JE et al. (2010). The Pfam protein families database. Nucleic Acids Res 38: D211-D222
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Finn, R.D.1
Mistry, J.2
Tate, J.3
Coggill, P.4
Heger, A.5
Pollington, J.E.6
-
13
-
-
0030807655
-
BIONJ: An improved version of the NJ algorithm based on a simple model of sequence data
-
Gascuel O. (1997). BIONJ: An improved version of the NJ algorithm based on a simple model of sequence data. Mol Biol Evol 14: 685-695
-
(1997)
Mol Biol Evol
, vol.14
, pp. 685-695
-
-
Gascuel, O.1
-
14
-
-
0036405356
-
Inteins: Structure, function, and evolution
-
Gogarten JP, Senejani AG, Zhaxybayeva O, Olendzenski L, Hilario E. (2002). Inteins: Structure, function, and evolution. Annu Rev Microbiol 56: 263-287
-
(2002)
Annu Rev Microbiol
, vol.56
, pp. 263-287
-
-
Gogarten, J.P.1
Senejani, A.G.2
Zhaxybayeva, O.3
Olendzenski, L.4
Hilario, E.5
-
15
-
-
33750975901
-
Multiple, non-Allelic, intein-coding sequences in eukaryotic RNA polymerase genes
-
Goodwin TJ, Butler MI, Poulter RT. (2006). Multiple, non-Allelic, intein-coding sequences in eukaryotic RNA polymerase genes. BMC Biol 4: 38
-
(2006)
BMC Biol
, vol.4
, pp. 38
-
-
Goodwin, T.J.1
Butler, M.I.2
Poulter, R.T.3
-
16
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon S, Gascuel O. (2003). A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52: 696-704
-
(2003)
Syst Biol
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
17
-
-
0035432062
-
The role of selfish genetic elements in eukaryotic evolution
-
Hurst GD, Werren JH. (2001). The role of selfish genetic elements in eukaryotic evolution. Nat Rev Genet 2: 597-606
-
(2001)
Nat Rev Genet
, vol.2
, pp. 597-606
-
-
Hurst, G.D.1
Werren, J.H.2
-
18
-
-
50849088978
-
Evolutionary convergence on highly-conserved 3' intron structures in intron-poor eukaryotes and insights into the ancestral eukaryotic genome
-
Irimia M, Roy SW. (2008). Evolutionary convergence on highly-conserved 3' intron structures in intron-poor eukaryotes and insights into the ancestral eukaryotic genome. PLoS Genet 4: E1000148
-
(2008)
PLoS Genet
, vol.4
-
-
Irimia, M.1
Roy, S.W.2
-
19
-
-
70849137211
-
Extensive, recent intron gains in Daphnia populations
-
Li W, Tucker AE, Sung W, Thomas WK, Lynch M. (2009). Extensive, recent intron gains in Daphnia populations. Science 326: 1260-1262
-
(2009)
Science
, vol.326
, pp. 1260-1262
-
-
Li, W.1
Tucker, A.E.2
Sung, W.3
Thomas, W.K.4
Lynch, M.5
-
20
-
-
0037197986
-
Intron evolution as a population-genetic process
-
Lynch M. (2002). Intron evolution as a population-genetic process. Proc Natl Acad Sci USA 99: 6118-6123
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 6118-6123
-
-
Lynch, M.1
-
21
-
-
77249178136
-
Molecular phylogeny and classification of the Mamiellophyceae class nov Chlorophyta) based on sequence comparisons of the nuclear- and plastid-encoded rRNA operons
-
Marin B, Melkonian M. (2010). Molecular phylogeny and classification of the Mamiellophyceae class. nov. (Chlorophyta) based on sequence comparisons of the nuclear- and plastid-encoded rRNA operons. Protist 161: 304-336
-
(2010)
Protist
, vol.161
, pp. 304-336
-
-
Marin, B.1
Melkonian, M.2
-
22
-
-
77950421915
-
Genome analysis of microorganisms living in amoebae reveals a melting pot of evolution
-
Moliner C, Fournier PE, Raoult D. (2010). Genome analysis of microorganisms living in amoebae reveals a melting pot of evolution. FEMS Microbiol Rev 34: 281-294
-
(2010)
FEMS Microbiol Rev
, vol.34
, pp. 281-294
-
-
Moliner, C.1
Fournier, P.E.2
Raoult, D.3
-
23
-
-
84855285214
-
Phosphate transporters in marine phytoplankton and their viruses: Cross-domain commonalities in viral-host gene exchanges
-
Monier A, Welsh RM, Gentemann C, Weinstock G, Sodergren E, Armbrust EV et al. (2012). Phosphate transporters in marine phytoplankton and their viruses: Cross-domain commonalities in viral-host gene exchanges. Environ Microbiol 14: 162-176
-
(2012)
Environ Microbiol
, vol.14
, pp. 162-176
-
-
Monier, A.1
Welsh, R.M.2
Gentemann, C.3
Weinstock, G.4
Sodergren, E.5
Armbrust, E.V.6
-
24
-
-
15544374899
-
Algal viruses with distinct intraspecies host specificities include identical intein elements
-
Nagasaki K, Shirai Y, Tomaru Y, Nishida K, Pietrokovski S. (2005). Algal viruses with distinct intraspecies host specificities include identical intein elements. Appl Environ Microbiol 71: 3599-3607
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 3599-3607
-
-
Nagasaki, K.1
Shirai, Y.2
Tomaru, Y.3
Nishida, K.4
Pietrokovski, S.5
-
25
-
-
84864683476
-
Origin of metazoan cadherin diversity and the antiquity of the classical cadherin/beta-catenin complex
-
Nichols SA, Roberts BW, Richter DJ, Fairclough SR, King N. (2012). Origin of metazoan cadherin diversity and the antiquity of the classical cadherin/beta-catenin complex. Proc Natl Acad Sci USA 109: 13046-13051
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 13046-13051
-
-
Nichols, S.A.1
Roberts, B.W.2
Richter, D.J.3
Fairclough, S.R.4
King, N.5
-
26
-
-
33646910500
-
Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens
-
Ogata H, La Scola B, Audic S, Renesto P, Blanc G, Robert C et al. (2006). Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens. PLoS Genet 2: E76
-
(2006)
PLoS Genet
, vol.2
-
-
Ogata, H.1
La Scola, B.2
Audic, S.3
Renesto, P.4
Blanc, G.5
Robert, C.6
-
27
-
-
15544379710
-
A new example of viral intein in Mimivirus
-
Ogata H, Raoult D, Claverie JM. (2005). A new example of viral intein in Mimivirus. Virol J 2: 8
-
(2005)
Virol J
, vol.2
, pp. 8
-
-
Ogata, H.1
Raoult, D.2
Claverie, J.M.3
-
28
-
-
0018818356
-
The destruction of Schistosoma mansoni mother sporocysts in vitro by amoebae isolated from Biomphalaria glabrata: An ultrastructural study
-
Owczarzak A, Stibbs HH, Bayne CJ. (1980). The destruction of Schistosoma mansoni mother sporocysts in vitro by amoebae isolated from Biomphalaria glabrata: An ultrastructural study. J Invertebr Pathol 35: 26-33
-
(1980)
J Invertebr Pathol
, vol.35
, pp. 26-33
-
-
Owczarzak, A.1
Stibbs, H.H.2
Bayne, C.J.3
-
29
-
-
0036084146
-
InBase: The intein database
-
Perler FB. (2002). InBase: The intein database. Nucleic Acids Res 30: 383-384
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 383-384
-
-
Perler, F.B.1
-
30
-
-
77649105637
-
-
e-BioSphere; 2009: London, U.K.
-
Piel W, Chan L, Dominus M, Ruan J, Vos R, V T. (2009). TreeBASE v. 2: A Database of Phylogenetic Knowledge. e-BioSphere; 2009: London, U.K.
-
(2009)
TreeBASE V. 2: A Database of Phylogenetic Knowledge
-
-
Piel, W.1
Chan, L.2
Dominus, M.3
Ruan, J.4
Vos, R.V.T.5
-
31
-
-
0035425040
-
Intein spread and extinction in evolution
-
Pietrokovski S. (2001). Intein spread and extinction in evolution. Trends Genet 17: 465-472
-
(2001)
Trends Genet
, vol.17
, pp. 465-472
-
-
Pietrokovski, S.1
-
33
-
-
77949718257
-
FastTree 2-Approximately maximum-likelihood trees for large alignments
-
Price MN, Dehal PS, Arkin AP. (2010). FastTree 2-Approximately maximum-likelihood trees for large alignments. PLoS One 5: E9490
-
(2010)
PLoS One
, vol.5
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
35
-
-
33644847698
-
The evolution of spliceosomal introns: Patterns, puzzles and progress
-
Roy SW, Gilbert W. (2006). The evolution of spliceosomal introns: Patterns, puzzles and progress. Nat Rev Genet 7: 211-221
-
(2006)
Nat Rev Genet
, vol.7
, pp. 211-221
-
-
Roy, S.W.1
Gilbert, W.2
-
36
-
-
40849104855
-
A phylogenomic investigation into the origin of metazoa
-
Ruiz-Trillo I, Roger AJ, Burger G, Gray MW, Lang BF. (2008). A phylogenomic investigation into the origin of metazoa. Mol Biol Evol 25: 664-672
-
(2008)
Mol Biol Evol
, vol.25
, pp. 664-672
-
-
Ruiz-Trillo, I.1
Roger, A.J.2
Burger, G.3
Gray, M.W.4
Lang, B.F.5
-
37
-
-
77956826336
-
Viral mutation rates
-
Sanjuan R, Nebot MR, Chirico N, Mansky LM, Belshaw R. (2010). Viral mutation rates. J Virol 84: 9733-9748
-
(2010)
J Virol
, vol.84
, pp. 9733-9748
-
-
Sanjuan, R.1
Nebot, M.R.2
Chirico, N.3
Mansky, L.M.4
Belshaw, R.5
-
38
-
-
79960313230
-
Lateral genetic transfer and the construction of genetic exchange communities
-
Skippington E, Ragan MA. (2011). Lateral genetic transfer and the construction of genetic exchange communities. FEMS Microbiol Rev 35: 707-735
-
(2011)
FEMS Microbiol Rev
, vol.35
, pp. 707-735
-
-
Skippington, E.1
Ragan, M.A.2
-
39
-
-
76049084239
-
Conservation of intron and intein insertion sites: Implications for life histories of parasitic genetic elements
-
Swithers KS, Senejani AG, Fournier GP, Gogarten JP. (2009). Conservation of intron and intein insertion sites: Implications for life histories of parasitic genetic elements. BMC Evol Biol 9: 303
-
(2009)
BMC Evol Biol
, vol.9
, pp. 303
-
-
Swithers, K.S.1
Senejani, A.G.2
Fournier, G.P.3
Gogarten, J.P.4
-
40
-
-
84862663959
-
Metagenomes of the picoalga bathycoccus from the Chile coastal upwelling
-
Vaulot D, Lepere C, Toulza E, De la Iglesia R, Poulain J, Gaboyer F et al. (2012). Metagenomes of the picoalga bathycoccus from the Chile coastal upwelling. PLoS One 7: E39648
-
(2012)
PLoS One
, vol.7
-
-
Vaulot, D.1
Lepere, C.2
Toulza, E.3
De La Iglesia, R.4
Poulain, J.5
Gaboyer, F.6
-
41
-
-
33746451235
-
Picoeukaryote diversity in coastal waters of the Pacific Ocean
-
Worden AZ. (2006). Picoeukaryote diversity in coastal waters of the Pacific Ocean. Aquat Microb Ecol 43: 165-175
-
(2006)
Aquat Microb Ecol
, vol.43
, pp. 165-175
-
-
Worden, A.Z.1
-
42
-
-
64849088316
-
Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas
-
Worden AZ, Lee JH, Mock T, Rouze P, Simmons MP, Aerts AL et al. (2009). Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science 324: 268-272
-
(2009)
Science
, vol.324
, pp. 268-272
-
-
Worden, A.Z.1
Lee, J.H.2
Mock, T.3
Rouze, P.4
Simmons, M.P.5
Aerts, A.L.6
-
43
-
-
73249132200
-
Evolutionary maintenance of selfish homing endonuclease genes in the absence of horizontal transfer
-
Yahara K, Fukuyo M, Sasaki A, Kobayashi I. (2009). Evolutionary maintenance of selfish homing endonuclease genes in the absence of horizontal transfer. Proc Natl Acad Sci USA 106: 18861-18866
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 18861-18866
-
-
Yahara, K.1
Fukuyo, M.2
Sasaki, A.3
Kobayashi, I.4
|