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Volumn 6, Issue , 2006, Pages

The distribution and evolutionary history of the PRP8 intein

Author keywords

[No Author keywords available]

Indexed keywords

INTEIN; VANILMANDELIC ACID; FUNGAL PROTEIN;

EID: 33745979535     PISSN: 14712148     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-6-42     Document Type: Article
Times cited : (38)

References (70)
  • 2
    • 0027753790 scopus 로고
    • In vitro protein splicing of purified precursor and the identification of a branched intermediate
    • Xu M, Southworth M, Mersha F, Hornstra L, Perler F: In vitro protein splicing of purified precursor and the identification of a branched intermediate. Cell 1993, 75:1371-77.
    • (1993) Cell , vol.75 , pp. 1371-1377
    • Xu, M.1    Southworth, M.2    Mersha, F.3    Hornstra, L.4    Perler, F.5
  • 3
    • 0029834656 scopus 로고    scopus 로고
    • Protein splicing involving the Saccharomyces cerevisiae VMA intein. the steps in the splicing pathway, side reactions leading to protein cleavage, and establishment of an in vitro splicing system
    • Chong S, Shao Y, Paulus H, Benner J, Perler F, Xu M: Protein splicing involving the Saccharomyces cerevisiae VMA intein. The steps in the splicing pathway, side reactions leading to protein cleavage, and establishment of an in vitro splicing system. J Biol Chem 1996, 271:22159-68.
    • (1996) J Biol Chem , vol.271 , pp. 22159-22168
    • Chong, S.1    Shao, Y.2    Paulus, H.3    Benner, J.4    Perler, F.5    Xu, M.6
  • 4
    • 0034511180 scopus 로고    scopus 로고
    • Protein-splicing intein: Genetic mobility, origin, and evolution
    • Liu X: Protein-splicing intein: genetic mobility, origin, and evolution. Annu Rev Genet 2000, 34:61-76.
    • (2000) Annu Rev Genet , vol.34 , pp. 61-76
    • Liu, X.1
  • 5
    • 0035883706 scopus 로고    scopus 로고
    • Homing endonucleases: Structural and functional insight into the catalysts of intron/intein mobility
    • Chevalier B, Stoddard B: Homing endonucleases: structural and functional insight into the catalysts of intron/intein mobility. Nucleic Acids Res 2001, 29:3757-3774.
    • (2001) Nucleic Acids Res , vol.29 , pp. 3757-3774
    • Chevalier, B.1    Stoddard, B.2
  • 6
    • 0026772764 scopus 로고
    • Homing of a DNA endonuclease gene by meiotic gene conversion in Saccharomyces cerevisiae
    • Gimble F, Thorner J: Homing of a DNA endonuclease gene by meiotic gene conversion in Saccharomyces cerevisiae. Nature 1992, 357:301-306.
    • (1992) Nature , vol.357 , pp. 301-306
    • Gimble, F.1    Thorner, J.2
  • 7
    • 0033598755 scopus 로고    scopus 로고
    • Recurrent invasion and extinction of a selfish gene
    • Goddard M, Burt A: Recurrent invasion and extinction of a selfish gene. Proc Natl Acad Sci U S A 1999, 96:13880-13885.
    • (1999) Proc Natl Acad Sci U S A , vol.96 , pp. 13880-13885
    • Goddard, M.1    Burt, A.2
  • 8
    • 53149131375 scopus 로고    scopus 로고
    • Outcrossed sex allows a selfish gene to invade yeast populations
    • Goddard M, Greig D, Burt A: Outcrossed sex allows a selfish gene to invade yeast populations. Proc Biol Sci 2001, 268:2537-42.
    • (2001) Proc Biol Sci , vol.268 , pp. 2537-2542
    • Goddard, M.1    Greig, D.2    Burt, A.3
  • 9
    • 3242738386 scopus 로고    scopus 로고
    • Evolution of divergent DNA recognition specificities in VDE homing endonucleases from two yeast species
    • Posey K, Koufopanou V, Burt A, Gimble F: Evolution of divergent DNA recognition specificities in VDE homing endonucleases from two yeast species. Nucleic Acids Res 2004, 32:3947-3956.
    • (2004) Nucleic Acids Res , vol.32 , pp. 3947-3956
    • Posey, K.1    Koufopanou, V.2    Burt, A.3    Gimble, F.4
  • 11
    • 8644255915 scopus 로고    scopus 로고
    • Homing endonuclease genes: The rise and fall and rise again of a selfish element
    • Burt A, Koufopanou V: Homing endonuclease genes: the rise and fall and rise again of a selfish element. Curr Opinion Genetics & Development 2004, 14:609-615.
    • (2004) Curr Opinion Genetics & Development , vol.14 , pp. 609-615
    • Burt, A.1    Koufopanou, V.2
  • 12
    • 0033963173 scopus 로고    scopus 로고
    • InBase, the Intein Database
    • Perler FB: InBase, the Intein Database. Nucleic Acids Res 2000, 28:344-5.
    • (2000) Nucleic Acids Res , vol.28 , pp. 344-345
    • Perler, F.B.1
  • 13
    • 0030911066 scopus 로고    scopus 로고
    • Protein splicing of the Saccharomyces cerevisiae VMA intein without the endonuclease motifs
    • Chong S, Xu M: Protein splicing of the Saccharomyces cerevisiae VMA intein without the endonuclease motifs. J Biol Chem 1997, 272:15587-90.
    • (1997) J Biol Chem , vol.272 , pp. 15587-15590
    • Chong, S.1    Xu, M.2
  • 14
    • 0030611387 scopus 로고    scopus 로고
    • Crystal structure of PI-SceI, a homing endonuclease with protein splicing activity
    • Duan X, Gimble F, Quiocho F: Crystal structure of PI-SceI, a homing endonuclease with protein splicing activity. Cell 1997, 89:555-564.
    • (1997) Cell , vol.89 , pp. 555-564
    • Duan, X.1    Gimble, F.2    Quiocho, F.3
  • 15
    • 0033782899 scopus 로고    scopus 로고
    • Protein splicing and related forms of protein autoprocessing
    • Paulus H: Protein splicing and related forms of protein autoprocessing. Annu Rev Biochem 2000, 69:447-496.
    • (2000) Annu Rev Biochem , vol.69 , pp. 447-496
    • Paulus, H.1
  • 16
    • 0025226104 scopus 로고
    • Protein splicing converts the yeast TFP1 gene product to the 69-kD subunit of the vacuolar H(+)-adenosine triphosphate
    • Kane P, Yamashiro C, Wolczyk D, Neff N, Goebl M, Stevens T: Protein splicing converts the yeast TFP1 gene product to the 69-kD subunit of the vacuolar H(+)-adenosine triphosphate. Science 1990, 250:651-657.
    • (1990) Science , vol.250 , pp. 651-657
    • Kane, P.1    Yamashiro, C.2    Wolczyk, D.3    Neff, N.4    Goebl, M.5    Stevens, T.6
  • 17
    • 0036184347 scopus 로고    scopus 로고
    • Adaptation for horizontal transfer in a homing endonuclease
    • Koufopanou V, Goddard M, Burt A: Adaptation for horizontal transfer in a homing endonuclease. Mol Biol Evol 2002, 19:239-46.
    • (2002) Mol Biol Evol , vol.19 , pp. 239-246
    • Koufopanou, V.1    Goddard, M.2    Burt, A.3
  • 18
    • 0037614832 scopus 로고    scopus 로고
    • Occurrence, horizontal transfer and degeneration of VDE intein family in Saccharomycete yeasts
    • Okuda Y, Sasaki D, Nogami S, Kaneko Y, Ohya Y, Anraku Y: Occurrence, horizontal transfer and degeneration of VDE intein family in Saccharomycete yeasts. Yeast 2003, 20:563-73.
    • (2003) Yeast , vol.20 , pp. 563-573
    • Okuda, Y.1    Sasaki, D.2    Nogami, S.3    Kaneko, Y.4    Ohya, Y.5    Anraku, Y.6
  • 19
    • 0035191438 scopus 로고    scopus 로고
    • A nuclear encoded intein in the fungal pathogen Cryptococcus neoformans
    • Butler M, Goodwin T, Poulter RTM: A nuclear encoded intein in the fungal pathogen Cryptococcus neoformans. Yeast 2001, 18:365-70.
    • (2001) Yeast , vol.18 , pp. 365-370
    • Butler, M.1    Goodwin, T.2    Poulter, R.T.M.3
  • 20
    • 16244411379 scopus 로고    scopus 로고
    • The PRP8 inteins in Cryptococcus are a source of phylogenetic and epidemiological information
    • Butler M, Poulter RTM: The PRP8 inteins in Cryptococcus are a source of phylogenetic and epidemiological information. Fungal Genetics and Biology 2005, 42:452-63.
    • (2005) Fungal Genetics and Biology , vol.42 , pp. 452-463
    • Butler, M.1    Poulter, R.T.M.2
  • 21
    • 0036948447 scopus 로고    scopus 로고
    • Genetics of Cryptococcus neoformans
    • Hull C, Heitman J: Genetics of Cryptococcus neoformans. Annu Rev Genet 2002, 36:557-615.
    • (2002) Annu Rev Genet , vol.36 , pp. 557-615
    • Hull, C.1    Heitman, J.2
  • 22
    • 0033675677 scopus 로고    scopus 로고
    • Multiple gene genealogies reveal recent dispersion and hybridization in the human pathogenic fungus Cryptococcus neoformans
    • Xu J, Vilgalys R, Mitchell T: Multiple gene genealogies reveal recent dispersion and hybridization in the human pathogenic fungus Cryptococcus neoformans. Mol Ecol 2000, 9:1471-81.
    • (2000) Mol Ecol , vol.9 , pp. 1471-1481
    • Xu, J.1    Vilgalys, R.2    Mitchell, T.3
  • 23
    • 0033792637 scopus 로고    scopus 로고
    • The question remains: Is the spliceosome a ribozyme?
    • Collins C, Guthrie C: The question remains: is the spliceosome a ribozyme? Nat Struct Biol 2000, 7:850-4.
    • (2000) Nat Struct Biol , vol.7 , pp. 850-854
    • Collins, C.1    Guthrie, C.2
  • 24
    • 0037047049 scopus 로고    scopus 로고
    • Distinct domains of splicing factor Prp8 mediate different aspects of spliceosome activation
    • Kuhn A, Reichl E, Brow D: Distinct domains of splicing factor Prp8 mediate different aspects of spliceosome activation. Proc Natl Acad Sci U S A 2002, 99:9145-9.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 9145-9149
    • Kuhn, A.1    Reichl, E.2    Brow, D.3
  • 25
    • 4143132304 scopus 로고    scopus 로고
    • Prp8 intein in fungal pathogens, target for potential antifungal drugs
    • Liu X, Yang J: Prp8 intein in fungal pathogens, target for potential antifungal drugs. FEBS Lett 2004, 572:46-50.
    • (2004) FEBS Lett , vol.572 , pp. 46-50
    • Liu, X.1    Yang, J.2
  • 27
    • 25644460037 scopus 로고    scopus 로고
    • Cryptic speciation in the cosmopolitan and clonal human pathogenic fungus Aspergillus fumigatus
    • Pringle A, Baker D, Platt J, Wares J, Latgé J, Taylor J: Cryptic speciation in the cosmopolitan and clonal human pathogenic fungus Aspergillus fumigatus. Evolution 2005, 59:1880-1890.
    • (2005) Evolution , vol.59 , pp. 1880-1890
    • Pringle, A.1    Baker, D.2    Platt, J.3    Wares, J.4    Latgé, J.5    Taylor, J.6
  • 28
    • 0028903757 scopus 로고
    • Molecular characterization of the food-borne fungus Neosartorya fischeri (Malloch and Cain)
    • Girardin H, Monod M, Latge J-P: Molecular characterization of the food-borne fungus Neosartorya fischeri (Malloch and Cain). Appl Environ Microbiol 1995, 61:1378-83.
    • (1995) Appl Environ Microbiol , vol.61 , pp. 1378-1383
    • Girardin, H.1    Monod, M.2    Latge, J.-P.3
  • 30
    • 33745969904 scopus 로고    scopus 로고
    • Polyphasic taxonomy of Neosartorya spinosa, N. glabra and related species, and the-description of N. laciniosa sp. nov. and N. coreanensis sp. nov. Poster presentation San Francisco. American Society for Microbiology. 23-28 July
    • Hong S, Cho H-S, Frisvad J, Samson R: Polyphasic taxonomy of Neosartorya spinosa, N. glabra and related species, and the-description of N. laciniosa sp. nov. and N. coreanensis sp. nov. In Poster presentation at the International Congress of Mycology San Francisco. American Society for Microbiology. 23-28 July 2005
    • (2005) International Congress of Mycology
    • Hong, S.1    Cho, H.-S.2    Frisvad, J.3    Samson, R.4
  • 33
    • 30744442321 scopus 로고    scopus 로고
    • Mistaken identity: Neosartorya pseudofischeri and its anamorph masquerading as Aspergillus fumigatus
    • Balajee SA, Gribskov JL, Brandt M, Ito J, Fothergill A, Marr K: Mistaken identity: Neosartorya pseudofischeri and its anamorph masquerading as Aspergillus fumigatus. J Clin Microbiol 2005, 43:5996-5999.
    • (2005) J Clin Microbiol , vol.43 , pp. 5996-5999
    • Balajee, S.A.1    Gribskov, J.L.2    Brandt, M.3    Ito, J.4    Fothergill, A.5    Marr, K.6
  • 35
    • 0031938897 scopus 로고    scopus 로고
    • Modular organization of inteins and C-terminal autocatalytic domains
    • Pietrokovski S: Modular organization of inteins and C-terminal autocatalytic domains. Protein Sci 1998, 7:64-71.
    • (1998) Protein Sci , vol.7 , pp. 64-71
    • Pietrokovski, S.1
  • 36
    • 20444391629 scopus 로고    scopus 로고
    • Degeneration and domestication of a selfish gene in yeast: Molecular evolution versus site-directed mutagenesis
    • Koufopanou V, Burt A: Degeneration and domestication of a selfish gene in yeast: molecular evolution versus site-directed mutagenesis. Mol Biol Evol 2005, 22:1535-1538.
    • (2005) Mol Biol Evol , vol.22 , pp. 1535-1538
    • Koufopanou, V.1    Burt, A.2
  • 37
    • 0022507362 scopus 로고
    • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
    • Nei M, Gojobori T: Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol 1986, 3:418-26.
    • (1986) Mol Biol Evol , vol.3 , pp. 418-426
    • Nei, M.1    Gojobori, T.2
  • 39
    • 0036300763 scopus 로고    scopus 로고
    • Synonymous-non-synonymous mutation rates between sequences containing ambiguous nucleotides (Syn-SCAN)
    • Gonzales M, Dugan J, Shafer R: Synonymous-non-synonymous mutation rates between sequences containing ambiguous nucleotides (Syn-SCAN). Bioinformatics 2002, 18:886-887.
    • (2002) Bioinformatics , vol.18 , pp. 886-887
    • Gonzales, M.1    Dugan, J.2    Shafer, R.3
  • 40
    • 33745997411 scopus 로고    scopus 로고
    • The SNAP server [http://www.hiv.lanl.gov/content/hiv-db/SNAP/ WEBSNAP/SNAP.html]
    • The SNAP Server
  • 41
    • 0030207708 scopus 로고    scopus 로고
    • Human pathogenic fungi and their close non-pathogenic relatives
    • Bowman B, White T, Taylor J: Human pathogenic fungi and their close non-pathogenic relatives. Molec Phylogenet and Evoln 1996, 6:89-96.
    • (1996) Molec Phylogenet and Evoln , vol.6 , pp. 89-96
    • Bowman, B.1    White, T.2    Taylor, J.3
  • 42
    • 0031450291 scopus 로고    scopus 로고
    • Nuclear rDNA phylogeny of the Sclerotiniaceae
    • Holst-Jensen A, Kohn LM, Schumacher T: Nuclear rDNA phylogeny of the Sclerotiniaceae. Mycologia 1997, 89:885-889.
    • (1997) Mycologia , vol.89 , pp. 885-889
    • Holst-Jensen, A.1    Kohn, L.M.2    Schumacher, T.3
  • 43
    • 0001225414 scopus 로고    scopus 로고
    • Fungal molecular evolution: Gene trees and geologic time
    • Edited by: McLaughlin D, McLaughlin E, Lemke E. Springer-Verlag, Berlin
    • Berbee M, Taylor J: Fungal molecular evolution: gene trees and geologic time. In The Mycota, vol. VIIB. Systematics and Evolution Edited by: McLaughlin D, McLaughlin E, Lemke E. Springer-Verlag, Berlin; 2001:229-246.
    • (2001) The Mycota, Vol. VIIB. Systematics and Evolution , vol.7 , pp. 229-246
    • Berbee, M.1    Taylor, J.2
  • 44
    • 0036143446 scopus 로고    scopus 로고
    • Genomes in flux: The evolution of archaeal and proteobacterial gene content
    • Snel B, Bork P, Huynen MA: Genomes in flux: the evolution of archaeal and proteobacterial gene content. Genome Res 2002, 12:17-25.
    • (2002) Genome Res , vol.12 , pp. 17-25
    • Snel, B.1    Bork, P.2    Huynen, M.A.3
  • 45
    • 0035425040 scopus 로고    scopus 로고
    • Intein spread and extinction in evolution
    • Pietrokovski S: Intein spread and extinction in evolution. Trends Genet 2001, 17:465-72.
    • (2001) Trends Genet , vol.17 , pp. 465-472
    • Pietrokovski, S.1
  • 47
    • 33745988661 scopus 로고    scopus 로고
    • The inteins of the fungi Pichia guilliermondii and Paracoccidioides brasiliensis
    • University of Otago, Dunedin, NZ
    • George K: The inteins of the fungi Pichia guilliermondii and Paracoccidioides brasiliensis. In Post-graduate diploma in science thesis University of Otago, Dunedin, NZ; 2005.
    • (2005) Post-graduate Diploma in Science Thesis
    • George, K.1
  • 48
    • 33745973019 scopus 로고    scopus 로고
    • Broad Institute
    • Fungal Genome Initiative: Broad Institute [http:// www.broad.mit.edu]
  • 49
    • 0034115579 scopus 로고    scopus 로고
    • Biodiversity and systematics of basidiomycetous yeasts as determined by large-subunit rDNA D1/D2 domain sequence analysis
    • Fell J, Boekhout T, Fonseca A, Scorzetti G, Statzell-Tallman A: Biodiversity and systematics of basidiomycetous yeasts as determined by large-subunit rDNA D1/D2 domain sequence analysis. Int J Syst Evol Microbiol 2000, 50:1351-71.
    • (2000) Int J Syst Evol Microbiol , vol.50 , pp. 1351-1371
    • Fell, J.1    Boekhout, T.2    Fonseca, A.3    Scorzetti, G.4    Statzell-Tallman, A.5
  • 51
    • 0004129886 scopus 로고
    • Clowes R, Hayes W, editors: Blackwell Scientific, Oxford, UK
    • Clowes R, Hayes W, editors: Experiments in Microbial Genetics. Blackwell Scientific, Oxford, UK; 1968.
    • (1968) Experiments in Microbial Genetics
  • 53
    • 0036893398 scopus 로고    scopus 로고
    • Systematics of basidiomycetous yeasts, a comparison of large subunit D1/D2 and internal transcribed spacer rDNA regions
    • Scorzetti G, Fell J, Fonseca A, Statzell-Tallman A: Systematics of basidiomycetous yeasts, a comparison of large subunit D1/D2 and internal transcribed spacer rDNA regions. FEMS Yeast Res 2002, 2:495-517.
    • (2002) FEMS Yeast Res , vol.2 , pp. 495-517
    • Scorzetti, G.1    Fell, J.2    Fonseca, A.3    Statzell-Tallman, A.4
  • 54
    • 0034001358 scopus 로고    scopus 로고
    • Mitochondrial cytochrome b gene analysis of Aspergillus fumigatus and related species
    • Wang L, Yokoyama K, Miyaji M, Nishimura K: Mitochondrial cytochrome b gene analysis of Aspergillus fumigatus and related species. J Clin Microbiol 2000, 38:1352-1358.
    • (2000) J Clin Microbiol , vol.38 , pp. 1352-1358
    • Wang, L.1    Yokoyama, K.2    Miyaji, M.3    Nishimura, K.4
  • 55
    • 33745979586 scopus 로고    scopus 로고
    • Allan Wilson Centre Genome Service [http://awcmee.mas sey.ac.nz/genome-service.htm]
  • 56
    • 33746009997 scopus 로고    scopus 로고
    • 4Peaks website
    • 4Peaks website [http://www.mekentosj.com/4peaks/]
  • 57
    • 33745976825 scopus 로고    scopus 로고
    • NCBI [http://www.ncbi.nlm.nih.gov/BLAST/]
  • 59
    • 0030464460 scopus 로고    scopus 로고
    • SEAVIEW and PHYLO_WIN: Two graphic tools for sequence alignment and molecular phylogeny
    • Galtier N, Gouy M, Gautier C: SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. Comput Appl Biosci 1996, 12:543-548.
    • (1996) Comput Appl Biosci , vol.12 , pp. 543-548
    • Galtier, N.1    Gouy, M.2    Gautier, C.3
  • 64
    • 33745986427 scopus 로고    scopus 로고
    • The Institute for Genome Research [http://www.tigr.org]
  • 65
    • 28844492079 scopus 로고    scopus 로고
    • Genomics of the fungal kingdom: Insights into eukaryote biology
    • Galagan J, Henn M, Ma L-J, Cuomo C, Birren B: Genomics of the fungal kingdom: Insights into eukaryote biology. Genome Research 2005, 15:1620-1631.
    • (2005) Genome Research , vol.15 , pp. 1620-1631
    • Galagan, J.1    Henn, M.2    Ma, L.-J.3    Cuomo, C.4    Birren, B.5
  • 66
    • 33746007557 scopus 로고    scopus 로고
    • Génolevures [http://cbi.labri.fr/Genolevures/]
  • 69
    • 84978154365 scopus 로고    scopus 로고
    • DOE Joint Genome Institute: Genome Portal [http:// genome.jgi-psf.org/]
    • Genome Portal
  • 70
    • 0344256533 scopus 로고    scopus 로고
    • Phylogenetic circumscription of Saccharomyces, Kluyveromyces and other members of the Saccharomycetaceae, and the proposal of the new genera Lachancea, Nakaseomyces, Naumovia, Vanderwaltozyma and Zygotorulaspora
    • Kurtzman C: Phylogenetic circumscription of Saccharomyces, Kluyveromyces and other members of the Saccharomycetaceae, and the proposal of the new genera Lachancea, Nakaseomyces, Naumovia, Vanderwaltozyma and Zygotorulaspora. FEMS Yeast Res 2003, 4:233-45.
    • (2003) FEMS Yeast Res , vol.4 , pp. 233-245
    • Kurtzman, C.1


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