메뉴 건너뛰기




Volumn 4, Issue , 2006, Pages

Multiple, non-allelic, intein-coding sequences in eukaryotic RNA polymerase genes

Author keywords

[No Author keywords available]

Indexed keywords

DNA DIRECTED RNA POLYMERASE; INTEIN; RNA POLYMERASE; RNA POLYMERASE II; PEPTIDE;

EID: 33750975901     PISSN: 17417007     EISSN: 17417007     Source Type: Journal    
DOI: 10.1186/1741-7007-4-38     Document Type: Article
Times cited : (15)

References (52)
  • 2
    • 0032498234 scopus 로고    scopus 로고
    • Protein splicing of inteins and hedgehog autoproteolysis: Structure, function, and evolution
    • Perler FB: Protein splicing of inteins and hedgehog autoproteolysis: structure, function, and evolution. Cell 1998, 92:1-4.
    • (1998) Cell , vol.92 , pp. 1-4
    • Perler, F.B.1
  • 3
    • 0033782899 scopus 로고    scopus 로고
    • Protein splicing and related forms of protein autoprocessing
    • Paulus H: Protein splicing and related forms of protein autoprocessing. Annu Rev Biochem 2000, 69:447-496.
    • (2000) Annu Rev Biochem , vol.69 , pp. 447-496
    • Paulus, H.1
  • 4
    • 0034511180 scopus 로고    scopus 로고
    • Protein-splicing intein: Genetic mobility, origin, and evolution
    • Liu XQ: Protein-splicing intein: Genetic mobility, origin, and evolution. Annu Rev Genet 2000, 34:61-76.
    • (2000) Annu Rev Genet , vol.34 , pp. 61-76
    • Liu, X.Q.1
  • 7
    • 0036084146 scopus 로고    scopus 로고
    • InBase: The Intein Database
    • Perler FB: InBase: the Intein Database. Nucleic Acids Res 2002, 30:383-384.
    • (2002) Nucleic Acids Res , vol.30 , pp. 383-384
    • Perler, F.B.1
  • 8
    • 0026772764 scopus 로고
    • Homing of a DNA endonuclease gene by meiotic gene conversion in Saccharomyces cerevisiae
    • Gimble FS, Thorner J: Homing of a DNA endonuclease gene by meiotic gene conversion in Saccharomyces cerevisiae. Nature 1992, 357:301-306.
    • (1992) Nature , vol.357 , pp. 301-306
    • Gimble, F.S.1    Thorner, J.2
  • 9
    • 0035425040 scopus 로고    scopus 로고
    • Intein spread and extinction in evolution
    • Pietrokovski S: Intein spread and extinction in evolution. Trends Genet 2001, 17:465-472.
    • (2001) Trends Genet , vol.17 , pp. 465-472
    • Pietrokovski, S.1
  • 10
    • 0025226104 scopus 로고
    • Protein splicing converts the yeast TFP1 gene product to the 69-kD Subunit of the vacuolar h+-adenosine triphosphatase
    • Kane PM, Yamashiro CT, Wolczyk DF, Neff N, Goebl M, Stevens TH: Protein splicing converts the yeast TFP1 gene product to the 69-kD Subunit of the vacuolar h+-adenosine triphosphatase. Science 1990, 250:651-657.
    • (1990) Science , vol.250 , pp. 651-657
    • Kane, P.M.1    Yamashiro, C.T.2    Wolczyk, D.F.3    Neff, N.4    Goebl, M.5    Stevens, T.H.6
  • 12
    • 0034665054 scopus 로고    scopus 로고
    • An alternative protein splicing mechanism for inteins lacking an N-terminal nucleophile
    • Southworth MW, Benner J, Perler FB: An alternative protein splicing mechanism for inteins lacking an N-terminal nucleophile. EMBO J 2000, 19:5019-5026.
    • (2000) EMBO J , vol.19 , pp. 5019-5026
    • Southworth, M.W.1    Benner, J.2    Perler, F.B.3
  • 13
    • 0345306632 scopus 로고    scopus 로고
    • Four inteins and three group II introns encoded in a bacterial ribonucleotide reductase gene
    • Liu X-Q, Yang J, Meng Q: Four inteins and three group II introns encoded in a bacterial ribonucleotide reductase gene. J Biol Chem 2003, 278:46826-46831.
    • (2003) J Biol Chem , vol.278 , pp. 46826-46831
    • Liu, X.-Q.1    Yang, J.2    Meng, Q.3
  • 14
    • 4143132304 scopus 로고    scopus 로고
    • Prp8 intein in fungal pathogens: Target for potential antifungal drugs
    • Liu XQ, Yang J: Prp8 intein in fungal pathogens: target for potential antifungal drugs. FEBS Lett 2004, 572:46-50.
    • (2004) FEBS Lett , vol.572 , pp. 46-50
    • Liu, X.Q.1    Yang, J.2
  • 15
    • 0030763705 scopus 로고    scopus 로고
    • Compilation and analysis of intein sequences
    • Perler FB, Olsen GJ, Adam E: Compilation and analysis of intein sequences. Nucleic Acids Res 1997, 25:1087-1093.
    • (1997) Nucleic Acids Res , vol.25 , pp. 1087-1093
    • Perler, F.B.1    Olsen, G.J.2    Adam, E.3
  • 17
    • 15544374899 scopus 로고    scopus 로고
    • Algal viruses with distinct intraspecies host specificities include identical intein elements
    • Nagasaki K, Shirai Y, Tomaru Y, Nishida K, Pietrokovski S: Algal viruses with distinct intraspecies host specificities include identical intein elements. Appl Environ Microbiol 2005, 71:3599-3607.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 3599-3607
    • Nagasaki, K.1    Shirai, Y.2    Tomaru, Y.3    Nishida, K.4    Pietrokovski, S.5
  • 18
    • 0025240361 scopus 로고
    • Molecular structure of a gene, VMAI, encoding the catalytic subunit of H(+)-translocating adenosine triphosphatase from vacuolar membranes of Saccharomyces cerevisiae
    • Hirata R, Ohsumk Y, Nakano A, Kawasaki H, Suzuki K, Anraku Y: Molecular structure of a gene, VMAI, encoding the catalytic subunit of H(+)-translocating adenosine triphosphatase from vacuolar membranes of Saccharomyces cerevisiae. J Biol Chem 1990, 265:6726-6733.
    • (1990) J Biol Chem , vol.265 , pp. 6726-6733
    • Hirata, R.1    Ohsumk, Y.2    Nakano, A.3    Kawasaki, H.4    Suzuki, K.5    Anraku, Y.6
  • 19
    • 0035191438 scopus 로고    scopus 로고
    • A nuclear-encoded intein in the fungal pathogen Cryptococcus neoformans
    • Butler MI, Goodwin TJ, Poulter RTM: A nuclear-encoded intein in the fungal pathogen Cryptococcus neoformans. Yeast 2001, 18:1365-1370.
    • (2001) Yeast , vol.18 , pp. 1365-1370
    • Butler, M.I.1    Goodwin, T.J.2    Poulter, R.T.M.3
  • 21
    • 16244411379 scopus 로고    scopus 로고
    • The PRP8 inteins in Cryptococcus are a source of phylogenetic and epidemiological information
    • Butler MI, Poulter RTM: The PRP8 inteins in Cryptococcus are a source of phylogenetic and epidemiological information. Fungal Genet Biol 2005, 42:452-463.
    • (2005) Fungal Genet Biol , vol.42 , pp. 452-463
    • Butler, M.I.1    Poulter, R.T.M.2
  • 23
    • 33749179044 scopus 로고    scopus 로고
    • Protein splicing of PRP8 mini-inteins from species of the genus Penicillium
    • Mar 17; [Epub ahead of print]
    • Elleuche S, Nolting N, Poggeler S: Protein splicing of PRP8 mini-inteins from species of the genus Penicillium. Appl Microbiol Biotechnol. 2006, Mar 17; [Epub ahead of print]
    • (2006) Appl Microbiol Biotechnol
    • Elleuche, S.1    Nolting, N.2    Poggeler, S.3
  • 24
    • 0032900424 scopus 로고    scopus 로고
    • The plastid genome of the cryptophyte alga, Guillardia theta: Complete sequence and conserved synteny groups confirm its common ancestry with red algae
    • Douglas SE, Penny SL: The plastid genome of the cryptophyte alga, Guillardia theta: complete sequence and conserved synteny groups confirm its common ancestry with red algae. J Mol Evol 1999, 48:236-244.
    • (1999) J Mol Evol , vol.48 , pp. 236-244
    • Douglas, S.E.1    Penny, S.L.2
  • 25
    • 51649139576 scopus 로고
    • Complete nucleotide sequence of the Porphyra purpurea chloroplast genome
    • Reith ME, Munholland J: Complete nucleotide sequence of the Porphyra purpurea chloroplast genome. Plant Mol Biol Rep 1995, 13:333-335.
    • (1995) Plant Mol Biol Rep , vol.13 , pp. 333-335
    • Reith, M.E.1    Munholland, J.2
  • 26
    • 0028074282 scopus 로고
    • The Chlamydomonas chloroplast clpP gene contains translated large insertion sequences and is essential for cell growth
    • Huang C, Wang S, Chen L, Lemieux C, Otis C, Turmel M, Liu X-Q: The Chlamydomonas chloroplast clpP gene contains translated large insertion sequences and is essential for cell growth. Mol Gen Genet 1994, 244:151-159.
    • (1994) Mol Gen Genet , vol.244 , pp. 151-159
    • Huang, C.1    Wang, S.2    Chen, L.3    Lemieux, C.4    Otis, C.5    Turmel, M.6    Liu, X.-Q.7
  • 27
    • 0030959311 scopus 로고    scopus 로고
    • Identification of an unusual intein in chloroplast ClpP protease of Chlamydomonas eugametos
    • Wang S, Liu XQ: Identification of an unusual intein in chloroplast ClpP protease of Chlamydomonas eugametos. J Biol Chem 1997, 272:11869-11873.
    • (1997) J Biol Chem , vol.272 , pp. 11869-11873
    • Wang, S.1    Liu, X.Q.2
  • 28
    • 15544379710 scopus 로고    scopus 로고
    • A new example of viral intein in Mimivirus
    • Ogata H, Raoult D, Claverie J-M: A new example of viral intein in Mimivirus. Virol J 2005, 2:8.
    • (2005) Virol J , vol.2 , pp. 8
    • Ogata, H.1    Raoult, D.2    Claverie, J.-M.3
  • 29
    • 0032505062 scopus 로고    scopus 로고
    • Identification of a virus Intein and a possible variation in the protein-splicing reaction
    • Pietrokovski S: Identification of a virus Intein and a possible variation in the protein-splicing reaction. Curr Biol 1998, 10:R634-635.
    • (1998) Curr Biol , vol.10
    • Pietrokovski, S.1
  • 30
    • 0942298130 scopus 로고    scopus 로고
    • Protein splicing of inteins with atypical glutamine and aspartate C-terminal residues
    • Amitai G, Dassa B, Pietrokovski S: Protein splicing of inteins with atypical glutamine and aspartate C-terminal residues. J Biol Chem 2004, 279:3121-31.
    • (2004) J Biol Chem , vol.279 , pp. 3121-3131
    • Amitai, G.1    Dassa, B.2    Pietrokovski, S.3
  • 31
    • 0036468364 scopus 로고    scopus 로고
    • Multisubunit RNA polymerases
    • Cramer P: Multisubunit RNA polymerases. Curr Opin Struc Biol 2002, 12:89-97.
    • (2002) Curr Opin Struc Biol , vol.12 , pp. 89-97
    • Cramer, P.1
  • 32
    • 33751006865 scopus 로고    scopus 로고
    • Fungal Genome Initiative: Broad Institute
    • Fungal Genome Initiative: Broad Institute [http://www.broad.mit.edu/ annotation/fgi]
  • 33
    • 33750986047 scopus 로고    scopus 로고
    • DOE Joint Genome Institute: Genome Portal
    • DOE Joint Genome Institute: Genome Portal [http://genome.jgi-psf.org/]
  • 36
    • 0034602344 scopus 로고    scopus 로고
    • A kingdom-level phylogeny of eukaryotes based on combined protein data
    • Baldauf SL, Roger AJ, Wenk-Siefert I, Doolittle WF: A kingdom-level phylogeny of eukaryotes based on combined protein data. Science 290:972-977.
    • Science , vol.290 , pp. 972-977
    • Baldauf, S.L.1    Roger, A.J.2    Wenk-Siefert, I.3    Doolittle, W.F.4
  • 38
    • 0035167322 scopus 로고    scopus 로고
    • Common origin of four diverse families of large eukaryotic DNA viruses
    • Iyer LM, Aravind L, Koonin EV: Common origin of four diverse families of large eukaryotic DNA viruses. J Virol 2001, 75:11720-11734.
    • (2001) J Virol , vol.75 , pp. 11720-11734
    • Iyer, L.M.1    Aravind, L.2    Koonin, E.V.3
  • 40
    • 16244385227 scopus 로고    scopus 로고
    • Basic Local Alignment Search Tool (BLAST)
    • National Center for Biotechnology Information (NCBI)
    • National Center for Biotechnology Information (NCBI): Basic Local Alignment Search Tool (BLAST). [http://www.ncbi.nlm.nih.gov/BLAST/]
  • 42
    • 0035827346 scopus 로고    scopus 로고
    • Structural basis of transcription: RNA polymerase II at 2.8 Ångstrom resolution
    • Cramer P, Bushnell DA, Kornberg RD: Structural basis of transcription: RNA polymerase II at 2.8 Ångstrom resolution. Science 2001, 292:1863-1876.
    • (2001) Science , vol.292 , pp. 1863-1876
    • Cramer, P.1    Bushnell, D.A.2    Kornberg, R.D.3
  • 45
    • 33751015909 scopus 로고    scopus 로고
    • MacPyMOL
    • MacPyMOL [http://pymol.sourceforge.net/]
  • 46
    • 33751003383 scopus 로고    scopus 로고
    • The Wellcome Trust Sanger Institute
    • The Wellcome Trust Sanger Institute [http://www.sanger.ac.uk/]
  • 47
    • 33750980832 scopus 로고    scopus 로고
    • Washington University Genome Sequencing Center
    • Washington University Genome Sequencing Center [http://genome.wustl.edu/]
  • 48
    • 33750992939 scopus 로고    scopus 로고
    • National Center for Biotechnology Information (NCBI)
    • National Center for Biotechnology Information (NCBI) [http://ncbi.nlm.nih.gov]
  • 50
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X Windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougon F, Higgins DG: The CLUSTAL_X Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 1997, 25:4876-4882.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougon, F.4    Higgins, D.G.5
  • 51
    • 0030464460 scopus 로고    scopus 로고
    • SEAVIEW and PHYLO_WIN: Two graphic tools for sequence alignment and molecular phylogeny
    • Galtier N, Gouy M, Gautier C: SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. Comput Appl Biosci 1996, 12:543-548.
    • (1996) Comput Appl Biosci , vol.12 , pp. 543-548
    • Galtier, N.1    Gouy, M.2    Gautier, C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.