메뉴 건너뛰기




Volumn 3, Issue 4, 2009, Pages 409-418

Detection of inteins among diverse DNA polymerase genes of uncultivated members of the Phycodnaviridae

Author keywords

Intein; Marine virus ecology; Phycodnavirus

Indexed keywords

DNA DIRECTED DNA POLYMERASE; INTEIN; SEA WATER; VIRUS DNA; VIRUS PROTEIN;

EID: 63349093773     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2008.120     Document Type: Article
Times cited : (25)

References (40)
  • 1
    • 1342309210 scopus 로고    scopus 로고
    • Parallel metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference
    • Altekar G, Dwarkadas S, Huelsenbeck JP, Ronquist F. (2004). Parallel metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference. Bioinformatics 20: 407-415.
    • (2004) Bioinformatics , vol.20 , pp. 407-415
    • Altekar, G.1    Dwarkadas, S.2    Huelsenbeck, J.P.3    Ronquist, F.4
  • 3
    • 0002638066 scopus 로고    scopus 로고
    • Viral lysis of Phaeocystis pouchetii and bacterial secondary production
    • Bratbak G, Jacobsen A, Heldal M. (1998). Viral lysis of Phaeocystis pouchetii and bacterial secondary production. Aquat Microb Ecol 16: 11-16.
    • (1998) Aquat Microb Ecol , vol.16 , pp. 11-16
    • Bratbak, G.1    Jacobsen, A.2    Heldal, M.3
  • 4
    • 0036692453 scopus 로고    scopus 로고
    • Isolation and characterization of a virus that infects Emiliania huxleyi (Haptophyta)
    • Castberg T, Thyrhaug R, Larsen A, Sandaa RA, Heldal M, Van Etten JL et al. (2002). Isolation and characterization of a virus that infects Emiliania huxleyi (Haptophyta). J Phycol 38: 767-774.
    • (2002) J Phycol , vol.38 , pp. 767-774
    • Castberg, T.1    Thyrhaug, R.2    Larsen, A.3    Sandaa, R.A.4    Heldal, M.5    Van Etten, J.L.6
  • 5
    • 0028964507 scopus 로고
    • Amplification of DNA polymerase gene fragments from viruses infecting microalgae
    • Chen F, Suttle CA. (1995). Amplification of DNA polymerase gene fragments from viruses infecting microalgae. Appl Environ Microbiol 61: 1274-1278.
    • (1995) Appl Environ Microbiol , vol.61 , pp. 1274-1278
    • Chen, F.1    Suttle, C.A.2
  • 6
    • 0029762609 scopus 로고    scopus 로고
    • Genetic diversity in marine algal virus communities as revealed by sequence analysis of DNA polymerase genes
    • Chen F, Suttle CA, Short SM. (1996). Genetic diversity in marine algal virus communities as revealed by sequence analysis of DNA polymerase genes. Appl Environ Microbiol 62: 2869-2874.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 2869-2874
    • Chen, F.1    Suttle, C.A.2    Short, S.M.3
  • 7
    • 34548709950 scopus 로고    scopus 로고
    • New genera of RNA viruses in subtropical seawater, inferred from polymerase gene sequences
    • Culley AI, Steward GF. (2007). New genera of RNA viruses in subtropical seawater, inferred from polymerase gene sequences. Appl Environ Microbiol 73: 5937-5944.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 5937-5944
    • Culley, A.I.1    Steward, G.F.2
  • 8
    • 31544483932 scopus 로고    scopus 로고
    • Community genomics among stratified microbial assemblages in the ocean's interior
    • DeLong EF, Preston CM, Mincer T, Rich V, Hallam SJ, Frigaard NU et al. (2006). Community genomics among stratified microbial assemblages in the ocean's interior. Science 311: 496-503.
    • (2006) Science , vol.311 , pp. 496-503
    • DeLong, E.F.1    Preston, C.M.2    Mincer, T.3    Rich, V.4    Hallam, S.J.5    Frigaard, N.U.6
  • 10
    • 33846362288 scopus 로고    scopus 로고
    • Sequence and annotation of the 369-kb NY-2A and the 345-kb AR158 viruses that infect Chlorella NC64A
    • Fitzgerald LA, Graves MV, Li X, Feldblyum T, Nierman WC, Van Etten JL. (2007). Sequence and annotation of the 369-kb NY-2A and the 345-kb AR158 viruses that infect Chlorella NC64A. Virology 358: 472-484.
    • (2007) Virology , vol.358 , pp. 472-484
    • Fitzgerald, L.A.1    Graves, M.V.2    Li, X.3    Feldblyum, T.4    Nierman, W.C.5    Van Etten, J.L.6
  • 11
    • 0033542481 scopus 로고    scopus 로고
    • Marine viruses and their biogeochemical and ecological effects
    • Fuhrman JA. (1999). Marine viruses and their biogeochemical and ecological effects. Nature 399: 541-548.
    • (1999) Nature , vol.399 , pp. 541-548
    • Fuhrman, J.A.1
  • 12
    • 33751233858 scopus 로고    scopus 로고
    • Inteins, introns, and homing endonucleases: Recent revelations about the life cycle of parasitic genetic elements
    • Gogarten JP, Hilario E. (2006). Inteins, introns, and homing endonucleases: recent revelations about the life cycle of parasitic genetic elements. BMC Evol Biol 6: 94.
    • (2006) BMC Evol Biol , vol.6 , pp. 94
    • Gogarten, J.P.1    Hilario, E.2
  • 14
    • 33645076499 scopus 로고    scopus 로고
    • Evolutionary genomics of nucleo-cytoplasmic large DNA viruses
    • Iyer LA, Balaji S, Koonin EV, Aravind L. (2006). Evolutionary genomics of nucleo-cytoplasmic large DNA viruses. Virus Res 117: 156-184.
    • (2006) Virus Res , vol.117 , pp. 156-184
    • Iyer, L.A.1    Balaji, S.2    Koonin, E.V.3    Aravind, L.4
  • 15
    • 0035167322 scopus 로고    scopus 로고
    • Common origin of four diverse families of large eukaryotic DNA viruses
    • Iyer LM, Aravind L, Koonin EV. (2001). Common origin of four diverse families of large eukaryotic DNA viruses. J Virol 75: 11720-11734.
    • (2001) J Virol , vol.75 , pp. 11720-11734
    • Iyer, L.M.1    Aravind, L.2    Koonin, E.V.3
  • 16
    • 44249093493 scopus 로고    scopus 로고
    • Phylogenetic analysis of members of the Phycodnaviridae virus family, using amplified fragments of the major capsid protein gene
    • Larsen JB, Larsen A, Bratbak G, Sandaa RA. (2008). Phylogenetic analysis of members of the Phycodnaviridae virus family, using amplified fragments of the major capsid protein gene. Appl Environ Microbiol 74: 3048-3057.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 3048-3057
    • Larsen, J.B.1    Larsen, A.2    Bratbak, G.3    Sandaa, R.A.4
  • 18
    • 0018689242 scopus 로고
    • A virus which lyses the marine nanoflagellate Micromonas pusilla
    • Mayer JA, Taylor FJR. (1979). A virus which lyses the marine nanoflagellate Micromonas pusilla. Nature 281: 299-301.
    • (1979) Nature , vol.281 , pp. 299-301
    • Mayer, J.A.1    Taylor, F.J.R.2
  • 19
    • 0028110066 scopus 로고
    • Isolation of virus capable of lysing the brown tide microalga, Aureococcus anophagefferens
    • Milligan KLD, Cosper EM. (1994). Isolation of virus capable of lysing the brown tide microalga, Aureococcus anophagefferens. Science 266: 805-807.
    • (1994) Science , vol.266 , pp. 805-807
    • Milligan, K.L.D.1    Cosper, E.M.2
  • 21
    • 0028165987 scopus 로고
    • Marine viral ecology: Incorporation of bacteriophage into the microbial planktonic food web paradigm
    • Murray AG, Eldridge PM. (1994). Marine viral ecology: incorporation of bacteriophage into the microbial planktonic food web paradigm. J Plankton Res 16: 627-641.
    • (1994) J Plankton Res , vol.16 , pp. 627-641
    • Murray, A.G.1    Eldridge, P.M.2
  • 22
    • 63349107362 scopus 로고    scopus 로고
    • Nagasaki K, Shirai Y, Tomaru Y, Nishida K, Pietrokovski S
    • Nagasaki K, Shirai Y, Tomaru Y, Nishida K, Pietrokovski S.
  • 23
    • 15544374899 scopus 로고    scopus 로고
    • Algal viruses with distinct intraspecies host specificities include identical intein elements
    • (2005). Algal viruses with distinct intraspecies host specificities include identical intein elements. Appl Environ Microbiol 71: 3599-3607.
    • Appl Environ Microbiol , vol.71 , pp. 3599-3607
  • 24
    • 0032724211 scopus 로고    scopus 로고
    • Cluster analysis on algicidal activity of HaV clones and virus sensitivity of Heterosigma akashiwo (Raphidophyceae)
    • Nagasaki K, Tarutani K, Yamaguchi M. (1999). Cluster analysis on algicidal activity of HaV clones and virus sensitivity of Heterosigma akashiwo (Raphidophyceae). J Plankton Res 21: 2219-2226.
    • (1999) J Plankton Res , vol.21 , pp. 2219-2226
    • Nagasaki, K.1    Tarutani, K.2    Yamaguchi, M.3
  • 25
    • 0001275436 scopus 로고    scopus 로고
    • Isolation of a virus infectious to the harmful bloom causing microalga Heterosigma akashiwo (Raphidophyceae)
    • Nagasaki K, Yamaguchi M. (1997). Isolation of a virus infectious to the harmful bloom causing microalga Heterosigma akashiwo (Raphidophyceae). Aquat Microb Ecol 13: 135-140.
    • (1997) Aquat Microb Ecol , vol.13 , pp. 135-140
    • Nagasaki, K.1    Yamaguchi, M.2
  • 26
    • 15544379710 scopus 로고    scopus 로고
    • A new example of viral intein in Mimivirus
    • Ogata H, Raoult D, Claverie JM. (2005). A new example of viral intein in Mimivirus. Virol J 2: 8.
    • (2005) Virol J , vol.2 , pp. 8
    • Ogata, H.1    Raoult, D.2    Claverie, J.M.3
  • 27
    • 0036084146 scopus 로고    scopus 로고
    • InBase: The intein database
    • Perler FB. (2002). InBase: the intein database. Nucleic Acids Res 30: 383-384.
    • (2002) Nucleic Acids Res , vol.30 , pp. 383-384
    • Perler, F.B.1
  • 28
    • 0031938897 scopus 로고    scopus 로고
    • Modular organization of inteins and C-terminal autocatalytic domains
    • Pietrokovski S. (1998). Modular organization of inteins and C-terminal autocatalytic domains. Protein Sci 7: 64-71.
    • (1998) Protein Sci , vol.7 , pp. 64-71
    • Pietrokovski, S.1
  • 30
    • 0001227671 scopus 로고
    • Viruses and virus-like particles of freshwater and marine eukaryotic algae - a review
    • Reisser W. (1993). Viruses and virus-like particles of freshwater and marine eukaryotic algae - a review. Arch Protistenkd 143: 257-265.
    • (1993) Arch Protistenkd , vol.143 , pp. 257-265
    • Reisser, W.1
  • 31
    • 0035950929 scopus 로고    scopus 로고
    • Isolation and characterization of two viruses with large genome size infecting Chrysochromulina encina (Prymnesiophyceae) and Pyramimonas orientalis (Prasinophyceae)
    • Sandaa RA, Heldal M, Castberg T, Thyrhaug R, Bratbak G. (2001). Isolation and characterization of two viruses with large genome size infecting Chrysochromulina encina (Prymnesiophyceae) and Pyramimonas orientalis (Prasinophyceae). Virology 290: 272-280.
    • (2001) Virology , vol.290 , pp. 272-280
    • Sandaa, R.A.1    Heldal, M.2    Castberg, T.3    Thyrhaug, R.4    Bratbak, G.5
  • 33
    • 44649097577 scopus 로고    scopus 로고
    • Diversity of algal viruses in various North American freshwater environments
    • Short SM, Short CM. (2008). Diversity of algal viruses in various North American freshwater environments. Aquat Microb Ecol 51: 13-21.
    • (2008) Aquat Microb Ecol , vol.51 , pp. 13-21
    • Short, S.M.1    Short, C.M.2
  • 34
    • 0036197501 scopus 로고    scopus 로고
    • Sequence analysis of marine virus communities reveals that groups of related algal viruses are widely distributed in nature
    • Short SM, Suttle CA. (2002). Sequence analysis of marine virus communities reveals that groups of related algal viruses are widely distributed in nature. Appl Environ Microbiol 68: 1290-1296.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 1290-1296
    • Short, S.M.1    Suttle, C.A.2
  • 35
    • 0038489425 scopus 로고    scopus 로고
    • Temporal dynamics of natural communities of marine algal viruses and eukaryotes
    • Short SM, Suttle CA. (2003). Temporal dynamics of natural communities of marine algal viruses and eukaryotes. Aquat Microb Ecol 32: 107-119.
    • (2003) Aquat Microb Ecol , vol.32 , pp. 107-119
    • Short, S.M.1    Suttle, C.A.2
  • 36
    • 45949105543 scopus 로고    scopus 로고
    • DIALIGN-TX: Greedy and progressive approaches for segment-based multiple sequence alignment
    • Subramanian AR, Kaufmann M, Morgenstern B. (2008). DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment. Algorithms Mol Biol 3: 6.
    • (2008) Algorithms Mol Biol , vol.3 , pp. 6
    • Subramanian, A.R.1    Kaufmann, M.2    Morgenstern, B.3
  • 37
    • 25144506135 scopus 로고    scopus 로고
    • Viruses in the sea
    • Suttle CA. (2005). Viruses in the sea. Nature 437: 356-361.
    • (2005) Nature , vol.437 , pp. 356-361
    • Suttle, C.A.1
  • 38
    • 0025833760 scopus 로고
    • Viruses and virus-like particles of eukaryotic algae
    • Van Etten JL, Lane LC, Meints RH. (1991). Viruses and virus-like particles of eukaryotic algae. Microbiol Rev 55: 586-620.
    • (1991) Microbiol Rev , vol.55 , pp. 586-620
    • Van Etten, J.L.1    Lane, L.C.2    Meints, R.H.3
  • 40
    • 33947235074 scopus 로고    scopus 로고
    • The sorcerer II global ocean sampling expedition: Expanding the universe of protein families
    • Yooseph S, Sutton G, Rusch DB, Halpern AL, Williamson SJ, Remington K et al. (2007). The sorcerer II global ocean sampling expedition: expanding the universe of protein families. PLoS Biol 5: 432-466.
    • (2007) PLoS Biol , vol.5 , pp. 432-466
    • Yooseph, S.1    Sutton, G.2    Rusch, D.B.3    Halpern, A.L.4    Williamson, S.J.5    Remington, K.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.