Epigenetics in adaptive evolution and development: The interplay between evolving species and epigenetic mechanisms

Handbook of Epigenetics

Volumn , Issue , 2011, Pages 425-445

  House, Simon H ^a  

^a NONE   (United Kingdom)

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[No Author keywords available]

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EID: 84882877018     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1016/B978-0-12-375709-8.00026-5     Document Type: Chapter

References (112)

1. Bird A Perceptions of epigenetics. Nature 2007, 447(7143):396-398.
2. House S. Stages in reproduction particularly vulnerable to xenobiotic hazards and nutritional deficits. In: Generating Healthy People: Nutrition and Health 2000;14(3). (Medline and click "Healthy People"). http://www.healthierbabies.org.
3. Ridgway R, House SH. The Unborn Child 2006, Karnac, London.
4. House SH. Nurturing the brain, nutritionally and emotionally, from before conception to late adolescence. In: Generating healthy brains. Nutr Health 2007;19(1-2). Bicester UK: AB Academic.
5. Barker DJP Mothers. Babies and Health in Later Life 1998, Churchill Livingstone, Edinburgh.
6. Gillman MW, Barker D, Bier D, Cagampang F, Challis J, Fall C, et al. Meeting report on the 3rd International Congress on Developmental Origins of Health and Disease (DOHaD). Pediatr Res 2007, May(61(5 Pt 1)):625-629.
7. Maret SM. The prenatal person: Frank lake's maternal-fetal distress syndrome 1997, University Press of America, Lanham, PhD thesis-Frank Lake's Maternal-Fetal Distress Syndrome. NJ: Drew University; 1992.
8. Lake F. Tight corners in pastoral counselling 2005, Bridge Pastoral Foundation, Birmingham UK, London: Darton L.T. 1981.
9. House SH Primal Integration Therapy-School of Lake-Dr Frank Lake, MB MRCPsych DPM. Int J Prenat & Perinat Psychol & Med 1999, 11(4):437-457. Heidelberg: Mattes. (2000). and J Prenatal Perinatal Psychol Health, 14(3-4):195-352, Lawrence KA: Allen.
10. Tobias PV Some aspects of the multifaceted dependence of early humanity on water. Nutr Health 2002, 16(1):13-17.
11. Stringer C Coasting out of Africa. Nature 2000, 4(405(6782)):24-25. 27.
12. Marsh DE The origins of diversity: Darwin's conditions and epigenetic variations. Nutr Health 2007, 19(1-2):103-132.
13. Crawford M, Marsh D. Nutrition and evolution 1995, Keats, New Canaan CT, USA, The Driving Force, London: Heinemann; 1989.
14. Darwin C. On the origin of species 1859, John Murray, London.
15. Lamarck J-B. Philosophie Zoologique, editor Charles M (2 vols). Paris: Savy; 1873.
16. Koonin EV, Wolf YI Is evolution Darwinian or/and Lamarckian?. Biol Direct 2009, 4(1):42.
17. Weismann A. The effects of external influences on development. Romanes lecture 1894, Frowde, London.
18. Jablonka E, Lamb MJ The epigenetic turn: the challenge of soft inheritance. Evolutionary genetics: concepts and case studies 1995, Oxford University Press, UK, www.mfo.ac.uk/files/images/Jablonka-ms_MPGM_EEEMclean.doc. C.W. Fox, J.B. Wolf (Eds.).
19. Saugstad LF From superior adaptation and function to brain dysfunction-the neglect of epigenetic factors. Nutr Health 2004, 18(1):3-27.
20. Crawford MA, Bloom M, Linseisen F, et al. Evidence for the unique function of DHA during the evolution of the modern hominid brain. Lipids 1999, 34:S39-S47. See http://www.physics.ubc.ca/~flinseis/Lipids/HumanBrain.pdf.
21. House SH Schoolchildren, maternal nutrition and generating healthy brains: the importance of lifecycle education for fertility, health and peace. Nutr Health 2008, 19(4). Bicester UK: AB Academic.
22. Keverne EB The significance of genomic imprinting for brain development and behavior. In: Generating Healthy Brains. Nutr Health 2007, 19:1-2.
23. Swaney WT, Curley JP, Champagne FA, Keverne EB Genomic imprinting mediates sexual experience-dependent olfactory learning in male mice. Proc Natl Acad Sci USA 2007, 104(14):6084-6089.
24. Keverne EB Genomic imprinting and the evolution of sex differences in mammalian reproductive strategies. Adv Genet 2007, 59:217-243.
25. Pembrey ME, Bygren LO, Kaati G, Edvinsson S, Northstone K, Sjostrom M, et al. Sex-specific, male-line transgenerational responses in humans. Eur J Hum Genet 2006, 14(2):159-166. Also Pembrey M (2006) The Ghost in Your Genes (2005). http://www.bbc.co.uk/sn/tvradio/programmes/horizon/ghostgenes.shtml.
26. Kaati G, Bygren LO, Pembrey M, Sjöström M Transgenerational response to nutrition, early life circumstances and longevity. Eur J Hum Genet 2007, 15(7):784-790.
27. Pembrey ME Time to take epigenetic inheritance seriously. Eur J Hum Genet 2002, 10(11):669-671.
28. Pembrey M Imprinting and transgenerational modulation of gene expression; human growth as a model. Acta Genet Med Gemellol (Roma) 1996, 45(1-2):111-125.
29. Golubovsky M, Manton KG A three-generation approach in biodemography is based on the developmental profiles and the epigenetics of female gametes. Front Biosci 2005, 10:187-191. http://www.bioscience.org/2005/v10/af/1520/pdf.pdf.
30. Monk M Epigenetic programming of differential gene expression in development and evolution. Dev Genet 1995, 17(3):188-197.
31. Monk M, Salpekar A Expression of imprinted genes in human preimplantation development. Mol Cell Endocrinol 2001, 183(Suppl 1):S35-S40.
32. Ogbuanu IU, Zhang H, Karmaus W Can we apply the Mendelian randomization methodology without considering epigenetic effects?. Emerg Themes Epidemiol 2009, 6:3.
33. Mill J, Tang T, Kaminsky Z, Khare T, Yazdanpanah S, Bouchard L, et al. Epigenomic profiling reveals DNA-methylation changes associated with major psychosis. Am J Hum Genet 2008, 82(3):696-711.
34. Mill J, Petronis A Pre- and peri-natal environmental risks for attention-deficit hyperactivity disorder (ADHD): the potential role of epigenetic processes in mediating susceptibility. J Child Psychol Psychiatry 2008, 49(10):1020-1030.
35. Barker DJP, in personal communication.
36. Singh SM, Murphy B, O'Reily R Epigenetic contributors to the discordance of monozygotic twins. Clin Genet 2002, 62:97-103.
37. Issa JP Epigenetic variation and human disease. J Nutr 2002, 132:2388S-2392S.
38. Boyano MD, Andollo N, Zalduendo MM, Aréchaga J Imprinting of mammalian male gametes is gene specific and does not occur at a single stage of differentiation. Int J Dev Biol 2008, 52(8):1105-1111.
39. Grandjean V, Rassoulzadegan M Epigenetic inheritance of the sperm: an unexpected role of RNA. Gynecol Obstet Fertil 2009, 37(6):558-561.
40. Monk M Genomic imprinting. Memories of mother and father. Nature 1987, 328(6127):203-204.
41. Keverne B. Personal communication, 2009.
42. Razin A Israel J Vet Med 2001, 56(2). http://www.isrvma.org/article/56_2_8.htm.
43. Heijmans BT, Tobi EW, Stein AD, Putter H, Blauw GJ, Susser ES, et al. Persistent epigenetic differences associated with prenatal exposure to famine in humans. Proc Natl Acad Sci USA 2008, 105(44):17046-17049.
44. Cropley JE, Suter CM, Beckman KB, Martin DI Germ-line epigenetic modification of the murine A vy allele by nutritional supplementation. Proc Natl Acad Sci USA 2006, 103(46):17308-17312.
45. Oberlander TF, Weinberg J, Papsdorf M, Grunau R, Misri S, Devlin AM Prenatal exposure to maternal depression, neonatal methylation of human glucocorticoid receptor gene (NR3C1) and infant cortisol stress responses. Epigenetics 2008, 3(2):97-106.
46. McGowan PO, Sasaki A, D'Alessio AC, Dymov S, Labonté B, Szyf M, et al. Epigenetic regulation of the glucocorticoid receptor in human brain associates with childhood abuse. Nat Neurosci 2009, 12:342-348.
47. Glynn LM, Wadhwa PD, Dunkel-Schetter C, Chicz-Demet A, Sandman CA When stress happens matters: effects of earthquake timing on stress responsivity in pregnancy. Am J Obstet Gynecol 2001, 185(3):779-780.
48. Yehuda R, Engel SM, Brand SR, Seckl J, Marcus SM, Berkowitz GS Transgenerational effects of posttraumatic stress disorder in babies of mothers exposed to the World Trade Center attacks during pregnancy. J Clin Endocrinol Metab 2005, 90(7):4115-4118.
49. Brand SR, Engel SM, Canfield RL, Yehuda R The effect of maternal PTSD following in utero trauma exposure on behavior and temperament in the 9-month-old infant. Ann N Y Acad Sci 2006, 1071:454-458.
50. Raine A, Brennan P, Mednick SA Birth complication combined with early maternal rejection at age 1 year predispose to violent crimes at age 18 years. Arch Gen Psychiatry 1994, 51:984-988.
51. Crawford M.A, Sinclair A.J. Nutritional influences in the evolution of the mammalian brain. In Lipids, malnutrition and the developing brain. Elliot K, Knight J, editors. A Ciba Foundation Symposium (19-21 October, 1971). Amsterdam: Elsevier; 1972. P. 267-92.
52. http://www.publications.parliament.uk/pa/ld200809/ldhansrd/text/91104-gc 0003.htm.
53. U.S. Department of Health and Human Services. http://news.health.com/2009/08/06/u-s-spending-mental-health-care-soarin g/.
54. Costs of Disorders of the Brain in Europe Eur J Neurol 2005, 12(Suppl. 1). http://www.europeanbraincouncil.org/pdfs/Publications_/EBC%20-%20Cost%20 Doc%20-%20EN.pdf.
55. Tuddenham E. Genome Evolution, Blood and Soil-a message from deep time. Post-Genome: Health implications for research and food policy; A McCarrison Society Conference, The Medical Society of London, September 19. europium.csc.mrc.ac.uk. 2001.
56. Holliday R Meiosis and sex: potent weapons in the competition between early eukaryotes and prokaryotes. Bioessays 2006, 28(11):1123-1125.
57. Ruiz-Trillo I, Roger AJ, Burger G, Gray MW, Lang BF A phylogenomic investigation into the origin of metazoa. Mol Biol Evol 2008, 25(4):664-672.
58. Zuckerkandl E, Cavalli G Combinatorial epigenetics, "junk DNA", and the evolution of complex organisms. Gene 2007, 390(1-2):232-242.
59. Jablonka E, Raz G Transgenerational epigenetic inheritance: prevalence, mechanisms, and implications for the study of heredity and evolution. Q Rev Biol 2009, 84(2):131-176.
60. Belyaev DK, Ruvinsky AO, Trut LN Inherited activation-inactivation of the star gene in foxes: its bearing on the problem of domestication. J Hered 1981, 72(4):267-274.
61. Lindberg J, Björnerfeldt S, Saetre P, Svartberg K, Seehuus B, Bakken M, et al. Election for tameness has changed brain gene expression in silver foxes. Curr Biol 2005, 15(22):R915-R916.
62. Rando OJ, Verstrepen KJ Timescales of genetic and epigenetic inheritance. Cell 2007, 128(4):655-668.
63. Burger G, Forget L, Zhu Y, Gray MW, Lang BF Unique mitochondrial genome architecture in unicellular relatives of animals. Proc Natl Acad Sci USA 2003, 100(3):892-897.
64. Dodd IB, Micheelsen MA, Sneppen K, Thon G. Theoretical analysis of Nucleosome mediated epigenetics. In Theoretical Analysis of Epigenetic Cell Memory by Nucleosome Modification. Cell 2007;129:813-22. http://www.cmol.nbi.dk/models/epigen/.
65. McBride KM, Barreto V, Ramiro AR, Stavropoulos P, Nussenzweig MC Somatic hypermutation is limited by CRM1-dependent nuclear export of activation-induced deaminase. J Exp Med 2004, 199(9):1235-1244.
66. Morgan HD, Dean W, Coker HA, Reik W, Petersen-Mahrt SK Activation-induced cytidine deaminase deaminates 5-methylcytosine in DNA and is expressed in pluripotent tissues: implications for epigenetic reprogramming. J Biol Chem 2004, 10(279(50)):52353-52360.
67. Kriaucionis S, Heintz N The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain. Science 15 2009, 329(5929):929-930.
68. Casadesús J, Low D Epigenetic gene regulation in the bacterial world. Microbiol Mol Biol Rev 2006, 70(3):830-856.
69. Gray MW, Burger G, Lang BF Mitochondrial evolution. Science 1999, 283(5407):1476-1481.
70. Gray MW, Burger G, Lang BF The origin and early evolution of mitochondria. Genome Biol 2001, 2(6).
71. Coffman JA Mitochondria and metazoan epigenesis. Semin Cell Dev Biol 2009, 20(3):321-329.
72. Margulis L. Symbiosis in cell evolution. San Francisco: W. H. Freeman and Company; 1981. p. 206-227./epigen/building on concept of Finnan AP, (1870) in Crawford & Marsh (1989/1995) p.70-71. http://www.cmol.nbi.dk/models.
73. Gray MW, Lang BF, Burger G Mitochondria of protists. Annu Rev Genet 2004, 38:477-524.
74. Albalat R Evolution of DNA-methylation machinery: DNA methyltransferases and methyl-DNA binding proteins in the amphioxus Branchiostoma floridae. Dev Genes Evol 2008, 218(11-12):691-701.
75. Barreto VM, Pan-Hammarstrom Q, Zhao Y, Hammarstrom L, Misulovin Z, Nussenzweig MC AID from bony fish catalyzes class switch recombination. J Exp Med 2005, 202(6):733-738.
76. Bian Y, Alberio R, Allegrucci C, Campbell KH, Johnson AD Epigenetic marks in somatic chromatin are remodelled to resemble pluripotent nuclei by amphibian oocyte extracts. Epigenetics 2009, 194-202.
77. Zhang Y, Qu L Non-coding RNAs and the acquisition of genomic imprinting in mammals. Sci China C Life Sci 2009, 52(3):195-204.
78. Renfree MB, Ager EI, Shaw G, Pask AJ Genomic imprinting in marsupial placentation. Reproduction 2008, 136(5):523-531.
79. Pask AJ, Papenfuss AT, Ager EI, McColl KA, Speed TP, Renfree MB Analysis of the platypus genome suggests a transposon origin for mammalian imprinting. Genome Biol 2009, 10(1):R1.
80. Reik W, Santos F, Mitsuya K, Morgan H, Dean W Epigenetic asymmetry in the mammalian zygote and early embryo: relationship to lineage commitment?. Philos Trans R Soc Lond B Biol Sci 2003, 358:1403-1409. discuss.
81. Prehn RT Rate-limiting step in the progression of mouse breast tumors. Int J Cancer 1977, 19(5):670-672.
82. Simmons D Epigenetic influences and disease (Write Science Right). Nat Educ 2008, 1(1). http://www.nature.com/scitable/topicpage/epigenetic-influences-and-disea se-895.
83. Gabory A, Attig L, Junien C Sexual dimorphism in environmental epigenetic programming. Mol Cell Endocrinol 2009, 304(1-2):8-18.
84. Hager R, Cheverud JM, Leamy LJ, Wolf JB Sex dependent imprinting effects on complex traits in mice. BMC Evol Biol 2008, 8:303.
85. Wang X, Sun Q, McGrath SD, Mardis ER, Soloway PD, Clark AG Transcriptome-wide identification of novel imprinted genes in neonatal mouse brain. PLoS ONE 2008, 3(12):e3839.
86. Mitchell SR, Reiss AL, Tatusko DH, Ikuta I, Kazmerski DB, Botti JA, et al. Neuroanatomic alterations and social and communication deficits in monozygotic twins discordant for autism disorder. Am J Psychiatry 2009, 166(8):917-925.
87. Pietiläinen KH, Söderlund S, Rissanen A, Nakanishi S, Jauhiainen M, Taskinen MR, et al. HDL subspecies in young adult twins: heritability and impact of overweight. Obesity (Silver Spring) 2009, 17(6):1208-1214.
88. Mastroeni D, McKee A, Grover A, Rogers J, Coleman PD Epigenetic differences in cortical neurons from a pair of monozygotic twins discordant for Alzheimer's disease. PLoS ONE 2009, 4(8):e6617.
89. Haque FN, Gottesman II, Wong AH Not really identical: epigenetic differences in monozygotic twins and implications for twin studies in psychiatry. Am J Med Genet C Semin Med Genet 2009, 15;(151C(2)):136-141.
90. Nathanielsz PW Animal models that elucidate basic principles of the developmental origins of adult diseases. ILAR J 2006, 47(1):73-82.
91. Nijland MJ, Ford SP, Nathanielsz PW Prenatal origins of adult disease. Curr Opin Obstet Gynecol 2008, 20(2):132-138.
92. Hung CC, Farooqi IS, Ong K, Luan J, Keogh JM, Pembrey M, et al. Contribution of variants in the small heterodimer partner gene to birthweight, adiposity, and insulin levels: mutational analysis and association studies in multiple populations. Diabetes 2003, 52(5):1288-1291.
93. Tremblay J, Hamet P Impact of genetic and epigenetic factors from early life to later disease. Metabolism 2008, 57(Suppl 2):S27-S31.
94. Sharma P, Senthilkumar RD, Brahmachari V, Sundaramoorthy E, Mahajan A, Sharma A, et al. Mining literature for a comprehensive pathway analysis: a case study for retrieval of homocysteine related genes for genetic and epigenetic studies. Lipids Health Dis 2006, 23(5):1.
95. Caspi A, Moffitt TE, et al. Role of genotype in the cycle of violence in maltreated children. Science 2002, 2(297(5582)):851-854.
96. Lipton BH Nature, nurture and the power of love. J Prenat Perinat Psychol Health 1998, 13(1):3-10.
97. Janov A. The primal scream 1973/1991, Abacus, London.
98. Janov A Life: How experience in the womb can affect our lives forever. J Prenat & Perinat Psychol & Health 2009, 23(3):143-184.
99. Emerson W. - and in 3. The Unborn Child. http://www.emersonbirthrx.com/bio.html.
100. Janus L. The enduring effects of prenatal experience 1997, Aronson, Northvale NJ.
101. Pribram KH. Languages of the brain 1971, Prentice-Hall, Englewood Cliffs NJ.
102. International Society of Prenatal and Perinatal Psychology and Medicine (ISPPM). http://www.isppm.de/.
103. Association For Pre- & Perinatal Psychology and Health. http://www.birthpsychology.com/.
104. Petronis A The origin of schizophrenia: genetic thesis, epigenetic antithesis, and resolving synthesis. Biol Psychiatry 2004, 55:965-970.
105. Richards EJ Inherited epigenetic variation-revisiting soft inheritance. Nat Rev Genet 2006, 7:395-401.
106. Newman ME Modularity and community structure in networks. Proc Natl Acad Sci USA 2006, 103:8577-8582.
107. Ford-Jones EL, Williams R, Bertrand J Social paediatrics and early child development: Part 1. Paediatr Child Health 2008, 13(9):755-758.
108. Wilkins-Haug L Epigenetics and assisted reproduction. Curr Opin Obstet Gynecol 2009, 21(3):201-206.
109. Charalambous M, da Rocha ST, Ferguson-Smith AC Genomic imprinting, growth control and the allocation of nutritional resources: consequences for postnatal life. Curr Opin Endocrinol Diabetes Obes 2007, 14(1):3-12.
110. Darwin C. The variation of animals and plants under domestication 1868, John Murray, London.
111. East Asian Seas Congress summary. November. 2009. IISD Reporting Services. http://www.iisd.ca/ymb/easc2009/.
112. Nathanielsz PW, Berghorn KA, Derks JB, Giussani DA, Docherty C, Unno N, et al. Life before birth: effects of cortisol on future cardiovascular and metabolic function. Acta Paediatr 2003, 92(7):766-772.