-
1
-
-
77953323918
-
Diversity and pathogenic potential of vibrios isolated from Abrolhos Bank corals
-
Alves N Jr, Neto OSM, Silva BSO et al. (2010) Diversity and pathogenic potential of vibrios isolated from Abrolhos Bank corals. Environ Microbiol Rep 2: 90-95.
-
(2010)
Environ Microbiol Rep
, vol.2
, pp. 90-95
-
-
Alves Jr, N.1
Neto, O.S.M.2
Silva, B.S.O.3
-
2
-
-
29144504177
-
At Least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies
-
Ashelford KE, Chuzhanova NA, Fry JC, Jones AJ & Weightman AJ (2005) At Least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies. Appl Environ Microbiol 71: 7724-7736.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 7724-7736
-
-
Ashelford, K.E.1
Chuzhanova, N.A.2
Fry, J.C.3
Jones, A.J.4
Weightman, A.J.5
-
4
-
-
84855987293
-
Marine natural products
-
Blunt JW, Copp BR, Keyzers RA, Munro MHG & Prinsep MR (2012) Marine natural products. Nat Prod Rep 29: 144-222.
-
(2012)
Nat Prod Rep
, vol.29
, pp. 144-222
-
-
Blunt, J.W.1
Copp, B.R.2
Keyzers, R.A.3
Munro, M.H.G.4
Prinsep, M.R.5
-
5
-
-
84881550435
-
-
The genus Pseudovibrio contains metabolically versatile and symbiotically interacting bacteria. In: Schwedt A (2011) Physiology of a marine Beggiatoa strain and the accompanying organism Pseudovibrio sp.- a facultatively oligotrophic bacterium. PhD Thesis, Bremen University, Bremen
-
Bondarev V, Richter M, Piel J, Schwedt A & Schulz-Vogt HN (2011) The genus Pseudovibrio contains metabolically versatile and symbiotically interacting bacteria. In: Schwedt A (2011) Physiology of a marine Beggiatoa strain and the accompanying organism Pseudovibrio sp.- a facultatively oligotrophic bacterium. PhD Thesis, Bremen University, Bremen.
-
(2011)
-
-
Bondarev, V.1
Richter, M.2
Piel, J.3
Schwedt, A.4
Schulz-Vogt, H.N.5
-
6
-
-
43949120140
-
Diversity, ecology, and genomics of the Roseobacter clade: a short overview
-
Brinkhoff T, Giebel HA & Simon M (2008) Diversity, ecology, and genomics of the Roseobacter clade: a short overview. Arch Microbiol 189: 531-539.
-
(2008)
Arch Microbiol
, vol.189
, pp. 531-539
-
-
Brinkhoff, T.1
Giebel, H.A.2
Simon, M.3
-
7
-
-
34047181806
-
Family Irciniidae Gray, 1867
-
Hooper JNA & Van Soest RWM, eds), Kluwer Academic/Plenum Publishers, New York, Boston, Dordrecht, London, Moscow
-
Cook SDC & Bergquist PR (2002) Family Irciniidae Gray, 1867. Systema Porifera. A Guide to the Classification of Sponges (Hooper JNA & Van Soest RWM, eds), pp. 1022-1027. Kluwer Academic/Plenum Publishers, New York, Boston, Dordrecht, London, Moscow.
-
(2002)
Systema Porifera. A Guide to the Classification of Sponges
, pp. 1022-1027
-
-
Cook, S.D.C.1
Bergquist, P.R.2
-
8
-
-
58149242718
-
Genomics of pyrrolnitrin biosynthetic loci: evidence for conservation and whole-operon mobility within Gram-negative bacteria
-
Costa R, van Aarle I, Mendes R & van Elsas JD (2009) Genomics of pyrrolnitrin biosynthetic loci: evidence for conservation and whole-operon mobility within Gram-negative bacteria. Environ Microbiol 11: 159-175.
-
(2009)
Environ Microbiol
, vol.11
, pp. 159-175
-
-
Costa, R.1
van Aarle, I.2
Mendes, R.3
van Elsas, J.D.4
-
9
-
-
34547420196
-
Using BOX-PCR to exclude a clonal outbreak of melioidosis
-
Currie BJ, Gal D, Mayo M, Ward L, Godoy D, Spratt BG & LiPuma JJ (2007) Using BOX-PCR to exclude a clonal outbreak of melioidosis. BMC Infect Dis 7: 68-74.
-
(2007)
BMC Infect Dis
, vol.7
, pp. 68-74
-
-
Currie, B.J.1
Gal, D.2
Mayo, M.3
Ward, L.4
Godoy, D.5
Spratt, B.G.6
LiPuma, J.J.7
-
10
-
-
0029811673
-
Sulfated furanosesterterpenes from two sponges of the genus Ircinia
-
De Rosa S, Milone A, DeGiulio A, Crispino A & Iodice C (1996) Sulfated furanosesterterpenes from two sponges of the genus Ircinia. Nat Prod Lett 8: 245-251.
-
(1996)
Nat Prod Lett
, vol.8
, pp. 245-251
-
-
De Rosa, S.1
Milone, A.2
DeGiulio, A.3
Crispino, A.4
Iodice, C.5
-
11
-
-
0030907289
-
Palinurin and fasciculatin sulfates from two Thyrrenean sponges of the genus Ircinia
-
De Rosa S, DeGiulio A, Crispino A, Iodice C & Tommonaro G (1997) Palinurin and fasciculatin sulfates from two Thyrrenean sponges of the genus Ircinia. Nat Prod Lett 10: 7-12.
-
(1997)
Nat Prod Lett
, vol.10
, pp. 7-12
-
-
De Rosa, S.1
DeGiulio, A.2
Crispino, A.3
Iodice, C.4
Tommonaro, G.5
-
12
-
-
0041565163
-
Marine bacteria associated with sponge as source of cyclic peptides
-
De Rosa S, Mitova M & Tommonaro G (2003) Marine bacteria associated with sponge as source of cyclic peptides. Biomol Eng 20: 311-316.
-
(2003)
Biomol Eng
, vol.20
, pp. 311-316
-
-
De Rosa, S.1
Mitova, M.2
Tommonaro, G.3
-
13
-
-
34848911303
-
Polyketide synthases and nonribosomal peptide synthases: the emerging view from bacterial genomics
-
Donadio S, Monciardini P & Sosio M (2007) Polyketide synthases and nonribosomal peptide synthases: the emerging view from bacterial genomics. Nat Prod Rep 24: 1073-1109.
-
(2007)
Nat Prod Rep
, vol.24
, pp. 1073-1109
-
-
Donadio, S.1
Monciardini, P.2
Sosio, M.3
-
14
-
-
33646547894
-
Characterization of a culturable alphaproteobacterial symbiont common to many marine sponges and evidence for vertical transmission via sponge larvae
-
Enticknap JJ, Kelly M, Peraud O & Hill RT (2006) Characterization of a culturable alphaproteobacterial symbiont common to many marine sponges and evidence for vertical transmission via sponge larvae. Appl Environ Microbiol 72: 3724-3732.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 3724-3732
-
-
Enticknap, J.J.1
Kelly, M.2
Peraud, O.3
Hill, R.T.4
-
15
-
-
84862998261
-
Functional equivalence and evolutionary convergence in complex communities of microbial sponge symbionts
-
Fan L, Reynolds D, Liu M et al. (2012) Functional equivalence and evolutionary convergence in complex communities of microbial sponge symbionts. PNAS 109: E1878-E1887.
-
(2012)
PNAS
, vol.109
-
-
Fan, L.1
Reynolds, D.2
Liu, M.3
-
16
-
-
9244234513
-
Biosynthesis of nonribosomal peptides
-
Finking R & Marahiel MA (2004) Biosynthesis of nonribosomal peptides. Annu Rev Microbiol 58: 453-488.
-
(2004)
Annu Rev Microbiol
, vol.58
, pp. 453-488
-
-
Finking, R.1
Marahiel, M.A.2
-
17
-
-
67650281479
-
Polyketide assembly lines of uncultivated sponge symbionts from structure-based gene targeting
-
Fisch KM, Gurgui C, Heycke N et al. (2009) Polyketide assembly lines of uncultivated sponge symbionts from structure-based gene targeting. Nat Chem Biol 5: 494-501.
-
(2009)
Nat Chem Biol
, vol.5
, pp. 494-501
-
-
Fisch, K.M.1
Gurgui, C.2
Heycke, N.3
-
18
-
-
0035956590
-
Temporal variation of the microbial community associated with the mediterranean sponge Aplysina aerophoba
-
Friedrich AB, Fischer I, Proksch P, Hacker J & Hentschel U (2001) Temporal variation of the microbial community associated with the mediterranean sponge Aplysina aerophoba. FEMS Microbiol Ecol 38: 105-115.
-
(2001)
FEMS Microbiol Ecol
, vol.38
, pp. 105-115
-
-
Friedrich, A.B.1
Fischer, I.2
Proksch, P.3
Hacker, J.4
Hentschel, U.5
-
19
-
-
33847289813
-
Evidence for the involvement of pathogenic bacteria in summer mortalities of the pacific oyster Crassostrea gigas
-
Garnier M, Labreuche Y, Garcia C, Robert M & Nicolas JL (2007) Evidence for the involvement of pathogenic bacteria in summer mortalities of the pacific oyster Crassostrea gigas. Microb Ecol 53: 187-196.
-
(2007)
Microb Ecol
, vol.53
, pp. 187-196
-
-
Garnier, M.1
Labreuche, Y.2
Garcia, C.3
Robert, M.4
Nicolas, J.L.5
-
20
-
-
34548727434
-
The importance of culturing bacterioplankton in the 'omics' age
-
Giovannoni S & Stingl U (2007) The importance of culturing bacterioplankton in the 'omics' age. Nat Rev Microbiol 5: 820-826.
-
(2007)
Nat Rev Microbiol
, vol.5
, pp. 820-826
-
-
Giovannoni, S.1
Stingl, U.2
-
21
-
-
84871657844
-
Phylogenetically and spatially close marine sponges harbour divergent bacterial communities
-
Hardoim CCP, Esteves AIS, Pires FR, Gonçalves JMS, Cox C, Xavier JR & Costa R (2012) Phylogenetically and spatially close marine sponges harbour divergent bacterial communities. PLoS ONE 7: e53029.
-
(2012)
PLoS ONE
, vol.7
-
-
Hardoim, C.C.P.1
Esteves, A.I.S.2
Pires, F.R.3
Gonçalves, J.M.S.4
Cox, C.5
Xavier, J.R.6
Costa, R.7
-
22
-
-
77950368567
-
Phylogenetic diversity and antimicrobial activities of bryozoan-associated bacteria isolated from Mediterranean and Baltic Sea habitats
-
Heindl H, Wiese J, Thiel V & Imhoff JF (2010) Phylogenetic diversity and antimicrobial activities of bryozoan-associated bacteria isolated from Mediterranean and Baltic Sea habitats. Syst Appl Microbiol 33: 94-104.
-
(2010)
Syst Appl Microbiol
, vol.33
, pp. 94-104
-
-
Heindl, H.1
Wiese, J.2
Thiel, V.3
Imhoff, J.F.4
-
23
-
-
0035062712
-
Isolation and phylogenetic analysis of bacteria with antimicrobial activities from the Mediterranean sponges Aplysina aerophoba and Aplysina cavernicola
-
Hentschel U, Schmid M, Wagner M, Fieseler L, Gernert C & Hacker J (2001) Isolation and phylogenetic analysis of bacteria with antimicrobial activities from the Mediterranean sponges Aplysina aerophoba and Aplysina cavernicola. FEMS Microbiol Ecol 35: 305-312.
-
(2001)
FEMS Microbiol Ecol
, vol.35
, pp. 305-312
-
-
Hentschel, U.1
Schmid, M.2
Wagner, M.3
Fieseler, L.4
Gernert, C.5
Hacker, J.6
-
26
-
-
70350736731
-
Polyketide synthases of bacterial symbionts in sponges- Evolution-based applications in natural products research
-
Hochmuth T & Piel J (2009) Polyketide synthases of bacterial symbionts in sponges- Evolution-based applications in natural products research. Phytochemistry 70: 1841-1849.
-
(2009)
Phytochemistry
, vol.70
, pp. 1841-1849
-
-
Hochmuth, T.1
Piel, J.2
-
27
-
-
78649444018
-
Population dynamics of Vibrio spp. associated with marine sponge microcosms
-
Hoffmann M, Fischer M, Ottesen A, McCarthy PJ, Lopez JV, Brown EW & Monday SR (2010) Population dynamics of Vibrio spp. associated with marine sponge microcosms. ISME J 4: 1608-1612.
-
(2010)
ISME J
, vol.4
, pp. 1608-1612
-
-
Hoffmann, M.1
Fischer, M.2
Ottesen, A.3
McCarthy, P.J.4
Lopez, J.V.5
Brown, E.W.6
Monday, S.R.7
-
28
-
-
0034849408
-
MRBAYES: Bayesian inference of phylogenetic trees
-
Huelsenbeck JP & Ronquist F (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
29
-
-
63849240188
-
Applications of the rep-PCR DNA fingerprinting technique to study microbial diversity, ecology and evolution
-
Ishii S & Sadowsky MJ (2009) Applications of the rep-PCR DNA fingerprinting technique to study microbial diversity, ecology and evolution. Environ Microbiol 11: 733-740.
-
(2009)
Environ Microbiol
, vol.11
, pp. 733-740
-
-
Ishii, S.1
Sadowsky, M.J.2
-
30
-
-
77955911147
-
Culturing marine bacteria- an essential prerequisite for biodiscovery
-
Joint I, Mühling M & Querellou J (2010) Culturing marine bacteria- an essential prerequisite for biodiscovery. Microb Biotechnol 3: 564-575.
-
(2010)
Microb Biotechnol
, vol.3
, pp. 564-575
-
-
Joint, I.1
Mühling, M.2
Querellou, J.3
-
31
-
-
63449122196
-
Isolation and analysis of bacteria with antimicrobial activities from the marine sponge Haliclona simulans collected from Irish waters
-
Kennedy J, Baker P, Piper C et al. (2009) Isolation and analysis of bacteria with antimicrobial activities from the marine sponge Haliclona simulans collected from Irish waters. Mar Biotechnol 11: 384-396.
-
(2009)
Mar Biotechnol
, vol.11
, pp. 384-396
-
-
Kennedy, J.1
Baker, P.2
Piper, C.3
-
32
-
-
33947273040
-
Endozoicomonas elysicola gen. nov., sp. nov., a γ-proteobacterium isolated from the sea slug Elysia ornata
-
Kurahashi M & Yokota A (2007) Endozoicomonas elysicola gen. nov., sp. nov., a γ-proteobacterium isolated from the sea slug Elysia ornata. Syst Appl Microbiol 30: 202-206.
-
(2007)
Syst Appl Microbiol
, vol.30
, pp. 202-206
-
-
Kurahashi, M.1
Yokota, A.2
-
33
-
-
28244449010
-
Culturable bacterial symbionts isolated from two distinct sponge species (Pseudoceratina clavata and Rhabdastrella globostellata) from the Great Barrier Reef display similar phylogenetic diversity
-
Lafi FF, Garson MJ & Fuerst JA (2005) Culturable bacterial symbionts isolated from two distinct sponge species (Pseudoceratina clavata and Rhabdastrella globostellata) from the Great Barrier Reef display similar phylogenetic diversity. Microb Ecol 50: 213-220.
-
(2005)
Microb Ecol
, vol.50
, pp. 213-220
-
-
Lafi, F.F.1
Garson, M.J.2
Fuerst, J.A.3
-
34
-
-
79953028506
-
Pyrosequencing reveals highly diverse and species-specific microbial communities in sponges from the Red Sea
-
Lee OO, Wang Y, Yang J, Lafi FF, Al-Suwailem A & Qian P-Y (2011) Pyrosequencing reveals highly diverse and species-specific microbial communities in sponges from the Red Sea. ISME J 5: 650-664.
-
(2011)
ISME J
, vol.5
, pp. 650-664
-
-
Lee, O.O.1
Wang, Y.2
Yang, J.3
Lafi, F.F.4
Al-Suwailem, A.5
Qian, P.-Y.6
-
35
-
-
33645067677
-
Indole alkaloids from a sponge Sarcotragus species
-
Liu YH, Jung JH & Zhang S (2006) Indole alkaloids from a sponge Sarcotragus species. Biochem Syst Ecol 34: 453-456.
-
(2006)
Biochem Syst Ecol
, vol.34
, pp. 453-456
-
-
Liu, Y.H.1
Jung, J.H.2
Zhang, S.3
-
36
-
-
42449153364
-
Trisoxazole macrolides from the sponge Sarcotragus species
-
Liu Y, Ji H, Zhang S, Jung JH & Xu T (2008) Trisoxazole macrolides from the sponge Sarcotragus species. Chem Nat Compd 44: 140-141.
-
(2008)
Chem Nat Compd
, vol.44
, pp. 140-141
-
-
Liu, Y.1
Ji, H.2
Zhang, S.3
Jung, J.H.4
Xu, T.5
-
37
-
-
2542523843
-
ARB: a software environment for sequence data
-
Ludwig W, Strunk O, Westram R et al. (2004) ARB: a software environment for sequence data. Nucleic Acids Res 32: 1363-1371.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1363-1371
-
-
Ludwig, W.1
Strunk, O.2
Westram, R.3
-
38
-
-
84861744883
-
Nutrient fluxes through sponges: biology, budgets, and ecological implications
-
(Becerro MA, Uriz MJ, Maldonado M & Turon X, eds). Academic Press, London.
-
Maldonado M, Ribes M & van Duyl FC (2012) Nutrient fluxes through sponges: biology, budgets, and ecological implications. Advances in Marine Biology, Vol. 62 (Becerro MA, Uriz MJ, Maldonado M & Turon X, eds), pp. 113-182. Academic Press, London.
-
(2012)
Advances in Marine Biology
, vol.62
, pp. 113-182
-
-
Maldonado, M.1
Ribes, M.2
van Duyl, F.C.3
-
39
-
-
80053337515
-
Production of bioactive secondary metabolites by marine Vibrionaceae
-
Mansson M, Gram L & Larsen TO (2011) Production of bioactive secondary metabolites by marine Vibrionaceae. Mar Drugs 9: 1440-1468.
-
(2011)
Mar Drugs
, vol.9
, pp. 1440-1468
-
-
Mansson, M.1
Gram, L.2
Larsen, T.O.3
-
40
-
-
0026689286
-
A highly conserved repeated DNA element located in the chromosome of Streptococcus pneumoniae
-
Martin B, Humbert O, Camara M et al. (1992) A highly conserved repeated DNA element located in the chromosome of Streptococcus pneumoniae. Nucleic Acids Res 20: 3479-3483.
-
(1992)
Nucleic Acids Res
, vol.20
, pp. 3479-3483
-
-
Martin, B.1
Humbert, O.2
Camara, M.3
-
41
-
-
77956176168
-
Microbial diversity associated with algae, ascidians and sponges from the north coast of São Paulo state, Brazil
-
Menezes CBA, Bonugli-Santos RC, Miqueletto PB et al. (2010) Microbial diversity associated with algae, ascidians and sponges from the north coast of São Paulo state, Brazil. Microbiol Res 165: 466-482.
-
(2010)
Microbiol Res
, vol.165
, pp. 466-482
-
-
Menezes, C.B.A.1
Bonugli-Santos, R.C.2
Miqueletto, P.B.3
-
42
-
-
0141958920
-
A novel cyclopeptide from a bacterium associated with the marine sponge Ircinia muscarum
-
Mitova M, Tommonaro G & De Rosa S (2003) A novel cyclopeptide from a bacterium associated with the marine sponge Ircinia muscarum. Z Naturforsch 58c: 740-745.
-
(2003)
Z Naturforsch
, vol.58 c
, pp. 740-745
-
-
Mitova, M.1
Tommonaro, G.2
De Rosa, S.3
-
43
-
-
3242752592
-
Cyclic peptides from a Ruegeria strain of bacteria associated with the sponge Suberites domuncula
-
Mitova M, Popov S & De Rosa S (2004) Cyclic peptides from a Ruegeria strain of bacteria associated with the sponge Suberites domuncula. J Nat Prod 67: 1178-1181.
-
(2004)
J Nat Prod
, vol.67
, pp. 1178-1181
-
-
Mitova, M.1
Popov, S.2
De Rosa, S.3
-
44
-
-
37649021582
-
Abundance and bioactivity of cultured sponge-associated bacteria from the mediterranean sea
-
Muscholl-Silberhorn A, Thiel V & Imhoff JF (2008) Abundance and bioactivity of cultured sponge-associated bacteria from the mediterranean sea. Microb Ecol 55: 94-106.
-
(2008)
Microb Ecol
, vol.55
, pp. 94-106
-
-
Muscholl-Silberhorn, A.1
Thiel, V.2
Imhoff, J.F.3
-
45
-
-
79955801970
-
Culture independent characterization of bacteria associated with the mucus of the coral Acropora digitifera from the Gulf of Mannar
-
Nithyanand P, Indhumathi T, Ravi A & Pandian S (2011) Culture independent characterization of bacteria associated with the mucus of the coral Acropora digitifera from the Gulf of Mannar. World J Microbiol Biotechnol 27: 1399-1406.
-
(2011)
World J Microbiol Biotechnol
, vol.27
, pp. 1399-1406
-
-
Nithyanand, P.1
Indhumathi, T.2
Ravi, A.3
Pandian, S.4
-
46
-
-
84881551846
-
-
MrModeltest 2.3. Available at
-
Nylander JAA (2008) MrModeltest 2.3. Available at http://www.abc.se/~nylander/mrmodeltest2/mrmodeltest2.html
-
(2008)
-
-
Nylander, J.A.A.1
-
47
-
-
79955927089
-
Diversity and antimicrobial activity of Pseudovibrio spp. from Irish marine sponges
-
O'Halloran JA, Barbosa TM, Morrissey JP, Kennedy J, O'Gara F & Dobson ADW (2011) Diversity and antimicrobial activity of Pseudovibrio spp. from Irish marine sponges. J Appl Microbiol 110: 1495-1508.
-
(2011)
J Appl Microbiol
, vol.110
, pp. 1495-1508
-
-
O'Halloran, J.A.1
Barbosa, T.M.2
Morrissey, J.P.3
Kennedy, J.4
O'Gara, F.5
Dobson, A.D.W.6
-
48
-
-
48849112548
-
Ariakemicins A and B, novel polyketide-peptide antibiotics from a marine gliding bacterium of the genus Rapidithrix
-
Oku N, Adachi K, Matsuda S, Kasai H, Takatsuki A & Shizuri Y (2008) Ariakemicins A and B, novel polyketide-peptide antibiotics from a marine gliding bacterium of the genus Rapidithrix. Org Lett 10: 2481-2484.
-
(2008)
Org Lett
, vol.10
, pp. 2481-2484
-
-
Oku, N.1
Adachi, K.2
Matsuda, S.3
Kasai, H.4
Takatsuki, A.5
Shizuri, Y.6
-
49
-
-
4444264936
-
Metabolites from symbiotic bacteria
-
Piel J (2004) Metabolites from symbiotic bacteria. Nat Prod Rep 21: 519-538.
-
(2004)
Nat Prod Rep
, vol.21
, pp. 519-538
-
-
Piel, J.1
-
50
-
-
9244230571
-
Antitumor polyketide biosynthesis by an uncultivated bacterial symbiont of the marine sponge Theonella swinhoei
-
Piel J, Hui D, Wen G, Butzke D, Platzer M, Fusetani N & Matsunaga S (2004) Antitumor polyketide biosynthesis by an uncultivated bacterial symbiont of the marine sponge Theonella swinhoei. PNAS 101: 16222-16227.
-
(2004)
PNAS
, vol.101
, pp. 16222-16227
-
-
Piel, J.1
Hui, D.2
Wen, G.3
Butzke, D.4
Platzer, M.5
Fusetani, N.6
Matsunaga, S.7
-
51
-
-
84881542282
-
-
Padrões de distribuição e taxonomia para os Porifera da região central do Algarve. Master Thesis. Algarve University, Faro
-
Pires FR (2007) Padrões de distribuição e taxonomia para os Porifera da região central do Algarve. Master Thesis. Algarve University, Faro.
-
(2007)
-
-
Pires, F.R.1
-
52
-
-
37549027613
-
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
-
Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, Peplies J & Glöckner FO (2007) SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35: 7188-7196.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 7188-7196
-
-
Pruesse, E.1
Quast, C.2
Knittel, K.3
Fuchs, B.M.4
Ludwig, W.5
Peplies, J.6
Glöckner, F.O.7
-
53
-
-
78049248905
-
Identification of novel methane-, ethane-, and propane-oxidizing bacteria at marine hydrocarbon seeps by stable isotope probing
-
Redmond MC, Valentine DL & Sessions AL (2010) Identification of novel methane-, ethane-, and propane-oxidizing bacteria at marine hydrocarbon seeps by stable isotope probing. Appl Environ Microbiol 76: 6412-6422.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 6412-6422
-
-
Redmond, M.C.1
Valentine, D.L.2
Sessions, A.L.3
-
54
-
-
27644579896
-
Screening of antimicrobial activity of marine sponge extracts
-
Rifai S, Fassouane A, El-Abbouyi A, Wardani A, Kijjoa A & Van Soest R (2005a) Screening of antimicrobial activity of marine sponge extracts. J Mycol Med 15: 33-38.
-
(2005)
J Mycol Med
, vol.15
, pp. 33-38
-
-
Rifai, S.1
Fassouane, A.2
El-Abbouyi, A.3
Wardani, A.4
Kijjoa, A.5
Van Soest, R.6
-
55
-
-
23044472981
-
Cytotoxicity and inhibition of lymphocyte proliferation of fasciculatin, a linear furanosesterterpene isolated from Ircinia variabilis collected from the Atlantic Coast of Morocco
-
Rifai S, Fassouane A, Pinho PM, Kijjoa A, Nazareth N, Nascimento MS & Herz W (2005b) Cytotoxicity and inhibition of lymphocyte proliferation of fasciculatin, a linear furanosesterterpene isolated from Ircinia variabilis collected from the Atlantic Coast of Morocco. Mar Drugs 3: 15-21.
-
(2005)
Mar Drugs
, vol.3
, pp. 15-21
-
-
Rifai, S.1
Fassouane, A.2
Pinho, P.M.3
Kijjoa, A.4
Nazareth, N.5
Nascimento, M.S.6
Herz, W.7
-
57
-
-
0036860576
-
Approaches to prokaryotic biodiversity: a population genetics perspective
-
Rodríguez-Valera F (2002) Approaches to prokaryotic biodiversity: a population genetics perspective. Environ Microbiol 4: 628-633.
-
(2002)
Environ Microbiol
, vol.4
, pp. 628-633
-
-
Rodríguez-Valera, F.1
-
58
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
Ronquist F & Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
59
-
-
34247218626
-
The role of microorganisms in coral health, disease and evolution
-
Rosenberg E, Koren O, Reshef L, Efrony R & Zilber-Rosenberg I (2007) The role of microorganisms in coral health, disease and evolution. Nat Rev Microbiol 5: 355-362.
-
(2007)
Nat Rev Microbiol
, vol.5
, pp. 355-362
-
-
Rosenberg, E.1
Koren, O.2
Reshef, L.3
Efrony, R.4
Zilber-Rosenberg, I.5
-
60
-
-
77956296129
-
Isolation, characterization and phylogeny of sponge-associated bacteria with antimicrobial activities from Brazil
-
Santos OCS, Pontes P, Santos JFM, Muricy G, Giambiagi-deMarval M & Laport MS (2010) Isolation, characterization and phylogeny of sponge-associated bacteria with antimicrobial activities from Brazil. Res Microbiol 161: 604-612.
-
(2010)
Res Microbiol
, vol.161
, pp. 604-612
-
-
Santos, O.C.S.1
Pontes, P.2
Santos, J.F.M.3
Muricy, G.4
Giambiagi-deMarval, M.5
Laport, M.S.6
-
61
-
-
23744472955
-
Metagenomic analysis reveals diverse polyketide synthase gene clusters in microorganisms associated with the marine sponge Discodermia dissoluta
-
Schirmer A, Gadkari R, Reeves CD, Ibrahim F, DeLong EF & Hutchinson CR (2005) Metagenomic analysis reveals diverse polyketide synthase gene clusters in microorganisms associated with the marine sponge Discodermia dissoluta. Appl Environ Microbiol 71: 4840-4849.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 4840-4849
-
-
Schirmer, A.1
Gadkari, R.2
Reeves, C.D.3
Ibrahim, F.4
DeLong, E.F.5
Hutchinson, C.R.6
-
62
-
-
15444362001
-
Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
-
Schloss PD & Handelsman J (2005) Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol 71: 1501-1506.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 1501-1506
-
-
Schloss, P.D.1
Handelsman, J.2
-
63
-
-
72949107142
-
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss PD, Westcott SL, Ryabin T et al. (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75: 7537-7541.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
-
64
-
-
34247494635
-
Vertical transmission of a phylogenetically complex microbial consortium in the viviparous sponge Ircinia felix
-
Schmitt S, Weisz JB, Lindquist N & Hentschel U (2007) Vertical transmission of a phylogenetically complex microbial consortium in the viviparous sponge Ircinia felix. Appl Environ Microbiol 73: 2067-2078.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 2067-2078
-
-
Schmitt, S.1
Weisz, J.B.2
Lindquist, N.3
Hentschel, U.4
-
65
-
-
84857121586
-
Assessing the complex sponge microbiota: core, variable and species-specific bacterial communities in marine sponges
-
Schmitt S, Tsai P, Bell J et al. (2012) Assessing the complex sponge microbiota: core, variable and species-specific bacterial communities in marine sponges. ISME J 6: 564-576.
-
(2012)
ISME J
, vol.6
, pp. 564-576
-
-
Schmitt, S.1
Tsai, P.2
Bell, J.3
-
66
-
-
77953075776
-
Comprehensive investigation of marine actinobacteria associated with the sponge Halichondria panicea
-
Schneemann I, Nagel K, Kajahn I, Labes A, Wiese J & Imhoff JF (2010) Comprehensive investigation of marine actinobacteria associated with the sponge Halichondria panicea. Appl Environ Microbiol 76: 3702-3714.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 3702-3714
-
-
Schneemann, I.1
Nagel, K.2
Kajahn, I.3
Labes, A.4
Wiese, J.5
Imhoff, J.F.6
-
67
-
-
33646337639
-
Novel linear C-22-sesterterpenoids from sponge Ircinia formosana
-
Shen YC, Lo KL, Lin YC, Khalil AT, Kuo YH & Shih PS (2006) Novel linear C-22-sesterterpenoids from sponge Ircinia formosana. Tetrahedron Lett 47: 4007-4010.
-
(2006)
Tetrahedron Lett
, vol.47
, pp. 4007-4010
-
-
Shen, Y.C.1
Lo, K.L.2
Lin, Y.C.3
Khalil, A.T.4
Kuo, Y.H.5
Shih, P.S.6
-
68
-
-
70350504321
-
Irciformonins E-K, C-22-Trinorsesterterpenoids from the sponge Ircinia formosana
-
Shen YC, Shih PS, Lin YS, Lin YC, Kuo YH, Koo YC & Khalil AT (2009) Irciformonins E-K, C-22-Trinorsesterterpenoids from the sponge Ircinia formosana. Helv Chim Acta 92: 2101-2110.
-
(2009)
Helv Chim Acta
, vol.92
, pp. 2101-2110
-
-
Shen, Y.C.1
Shih, P.S.2
Lin, Y.S.3
Lin, Y.C.4
Kuo, Y.H.5
Koo, Y.C.6
Khalil, A.T.7
-
69
-
-
9744283395
-
Pseudovibrio denitrificans gen. nov., sp nov., a marine, facultatively anaerobic, fermentative bacterium capable of denitrification
-
Shieh WY, Lin YT & Jean WD (2004) Pseudovibrio denitrificans gen. nov., sp nov., a marine, facultatively anaerobic, fermentative bacterium capable of denitrification. Int J Syst Evol Microbiol 54: 2307-2312.
-
(2004)
Int J Syst Evol Microbiol
, vol.54
, pp. 2307-2312
-
-
Shieh, W.Y.1
Lin, Y.T.2
Jean, W.D.3
-
70
-
-
78649723307
-
PKS and NRPS gene clusters from microbial symbiont cells of marine sponges by whole genome amplification
-
Siegl A & Hentschel U (2010) PKS and NRPS gene clusters from microbial symbiont cells of marine sponges by whole genome amplification. Environ Microbiol Rep 2: 507-513.
-
(2010)
Environ Microbiol Rep
, vol.2
, pp. 507-513
-
-
Siegl, A.1
Hentschel, U.2
-
71
-
-
78650591665
-
Single-cell genomics reveals the lifestyle of Poribacteria, a candidate phylum symbiotically associated with marine sponges
-
Siegl A, Kamke J, Hochmuth T, Piel J, Richter M, Liang CG, Dandekar T & Hentschel U (2011) Single-cell genomics reveals the lifestyle of Poribacteria, a candidate phylum symbiotically associated with marine sponges. ISME J 5: 61-70.
-
(2011)
ISME J
, vol.5
, pp. 61-70
-
-
Siegl, A.1
Kamke, J.2
Hochmuth, T.3
Piel, J.4
Richter, M.5
Liang, C.G.6
Dandekar, T.7
Hentschel, U.8
-
72
-
-
84856569941
-
Sponge-specific clusters revisited: a comprehensive phylogeny of sponge-associated microorganisms
-
Simister RL, Deines P, Botté ES, Webster NS & Taylor MW (2012) Sponge-specific clusters revisited: a comprehensive phylogeny of sponge-associated microorganisms. Environ Microbiol 14: 517-524.
-
(2012)
Environ Microbiol
, vol.14
, pp. 517-524
-
-
Simister, R.L.1
Deines, P.2
Botté, E.S.3
Webster, N.S.4
Taylor, M.W.5
-
73
-
-
79953195547
-
Multiple approaches to enhance the cultivability of bacteria associated with the marine sponge Haliclona (gellius) sp
-
Sipkema D, Schippers K, Maalcke WJ, Yang Y, Salim S & Blanch HW (2011) Multiple approaches to enhance the cultivability of bacteria associated with the marine sponge Haliclona (gellius) sp. Appl Environ Microbiol 77: 2130-2140.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 2130-2140
-
-
Sipkema, D.1
Schippers, K.2
Maalcke, W.J.3
Yang, Y.4
Salim, S.5
Blanch, H.W.6
-
74
-
-
84866737525
-
Epidemic mortality of the sponge Ircinia variabilis (Schmidt, 1862) associated to proliferation of a vibrio bacterium
-
Stabili L, Cardone F, Alifano P, Tredici SM, Piraino S, Corriero G & Gaino E (2012) Epidemic mortality of the sponge Ircinia variabilis (Schmidt, 1862) associated to proliferation of a vibrio bacterium. Microb Ecol 64: 802-813.
-
(2012)
Microb Ecol
, vol.64
, pp. 802-813
-
-
Stabili, L.1
Cardone, F.2
Alifano, P.3
Tredici, S.M.4
Piraino, S.5
Corriero, G.6
Gaino, E.7
-
75
-
-
33750403801
-
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis A (2006) RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
76
-
-
0034887171
-
Polyketide biosynthesis: a millennium review
-
Staunton J & Weissman KJ (2001) Polyketide biosynthesis: a millennium review. Nat Prod Rep 18: 380-416.
-
(2001)
Nat Prod Rep
, vol.18
, pp. 380-416
-
-
Staunton, J.1
Weissman, K.J.2
-
77
-
-
33847029508
-
Identification of the putative bryostatin polyketide synthase gene cluster from "Candidatus Endobugula sertula", the uncultivated microbial symbiont of the marine bryozoan Bugula neritina
-
Sudek S, Lopanik NB, Waggoner LE, Hildebrand M, Anderson C, Liu H, Patel A, David H, Sherman DH & Haygood MG (2007) Identification of the putative bryostatin polyketide synthase gene cluster from "Candidatus Endobugula sertula", the uncultivated microbial symbiont of the marine bryozoan Bugula neritina. J Nat Prod 70: 67-74.
-
(2007)
J Nat Prod
, vol.70
, pp. 67-74
-
-
Sudek, S.1
Lopanik, N.B.2
Waggoner, L.E.3
Hildebrand, M.4
Anderson, C.5
Liu, H.6
Patel, A.7
David, H.8
Sherman, D.H.9
Haygood, M.G.10
-
78
-
-
34250733462
-
Sponge-associated microorganisms: evolution, ecology and biotechnological potential
-
Taylor MW, Radax R, Steger D & Wagner M (2007) Sponge-associated microorganisms: evolution, ecology and biotechnological potential. Microbiol Mol Biol Rev 71: 295-347.
-
(2007)
Microbiol Mol Biol Rev
, vol.71
, pp. 295-347
-
-
Taylor, M.W.1
Radax, R.2
Steger, D.3
Wagner, M.4
-
79
-
-
78650012665
-
Genome mining reveals trans-AT polyketide synthase directed antibiotic biosynthesis in the bacterial phylum Bacteroidetes
-
Teta R, Gurgui M, Helfrich EJN, Künne S, Schneider A, Van Echten-Deckert G, Mangoni A & Piel J (2010) Genome mining reveals trans-AT polyketide synthase directed antibiotic biosynthesis in the bacterial phylum Bacteroidetes. ChemBioChem 11: 2506-2512.
-
(2010)
ChemBioChem
, vol.11
, pp. 2506-2512
-
-
Teta, R.1
Gurgui, M.2
Helfrich, E.J.N.3
Künne, S.4
Schneider, A.5
Van Echten-Deckert, G.6
Mangoni, A.7
Piel, J.8
-
80
-
-
0043067990
-
Phylogenetic identification of bacteria with antimicrobial activities isolated from Mediterranean sponges
-
Thiel V & Imhoff JF (2003) Phylogenetic identification of bacteria with antimicrobial activities isolated from Mediterranean sponges. Biomol Eng 20: 421-423.
-
(2003)
Biomol Eng
, vol.20
, pp. 421-423
-
-
Thiel, V.1
Imhoff, J.F.2
-
81
-
-
78649450996
-
Functional genomic signatures of sponge bacteria reveal unique and shared features of symbiosis
-
Thomas T, Rusch D, DeMaere MZ, Yung PY, Lewis M, Halpern A, Heidelberg KB, Egan S, Steinberg PD & Kjelleberg S (2010) Functional genomic signatures of sponge bacteria reveal unique and shared features of symbiosis. ISME J 4: 1557-1567.
-
(2010)
ISME J
, vol.4
, pp. 1557-1567
-
-
Thomas, T.1
Rusch, D.2
DeMaere, M.Z.3
Yung, P.Y.4
Lewis, M.5
Halpern, A.6
Heidelberg, K.B.7
Egan, S.8
Steinberg, P.D.9
Kjelleberg, S.10
-
83
-
-
59249089471
-
Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths
-
Touchon M, Hoede C, Tenaillon O et al. (2009) Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. PLoS Genet 5: e1000344.
-
(2009)
PLoS Genet
, vol.5
-
-
Touchon, M.1
Hoede, C.2
Tenaillon, O.3
-
84
-
-
0000580635
-
Description de cellules a bactéries intranucléaires chez des éponges Verongia
-
Vacelet J (1970) Description de cellules a bactéries intranucléaires chez des éponges Verongia. J Microsc 9: 333-346.
-
(1970)
J Microsc
, vol.9
, pp. 333-346
-
-
Vacelet, J.1
-
85
-
-
0016664580
-
Étude en microscopie électronique de l'association entre bactéries et spongiaires du genre Verongia (Dictyoceratida)
-
Vacelet J (1975) Étude en microscopie électronique de l'association entre bactéries et spongiaires du genre Verongia (Dictyoceratida). J Microsc Biol Cell 23: 271-288.
-
(1975)
J Microsc Biol Cell
, vol.23
, pp. 271-288
-
-
Vacelet, J.1
-
86
-
-
0000393614
-
Electron microscope study of the association between some sponges and bacteria
-
Vacelet J & Donadey C (1977) Electron microscope study of the association between some sponges and bacteria. J Exp Mar Biol Ecol 30: 301-314.
-
(1977)
J Exp Mar Biol Ecol
, vol.30
, pp. 301-314
-
-
Vacelet, J.1
Donadey, C.2
-
87
-
-
78149408759
-
Survival of Escherichia coli in the environment- fundamental and public health aspects
-
Van Elsas JD, Semenov AV, Costa R & Trevors JT (2011) Survival of Escherichia coli in the environment- fundamental and public health aspects. ISME J 5: 173-183.
-
(2011)
ISME J
, vol.5
, pp. 173-183
-
-
Van Elsas, J.D.1
Semenov, A.V.2
Costa, R.3
Trevors, J.T.4
-
88
-
-
0027992990
-
Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction
-
Versalovic J, Schneider M, de Bruijn FJ & Lupski JR (1994) Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction. Methods Mol Cell Biol 5: 25-40.
-
(1994)
Methods Mol Cell Biol
, vol.5
, pp. 25-40
-
-
Versalovic, J.1
Schneider, M.2
de Bruijn, F.J.3
Lupski, J.R.4
-
89
-
-
43249126753
-
Sesterterpenoids from the sponge Sarcotragus sp
-
Wang N, Song J, Jang KH, Lee HS, Li X, Oh KB & Shin J (2008) Sesterterpenoids from the sponge Sarcotragus sp. J Nat Prod 71: 551-557.
-
(2008)
J Nat Prod
, vol.71
, pp. 551-557
-
-
Wang, N.1
Song, J.2
Jang, K.H.3
Lee, H.S.4
Li, X.5
Oh, K.B.6
Shin, J.7
-
90
-
-
0035051257
-
The culturable microbial community of the Great Barrier Reef sponge Rhopaloeides odorabile is dominated by an alpha-Proteobacterium
-
Webster NS & Hill RT (2001) The culturable microbial community of the Great Barrier Reef sponge Rhopaloeides odorabile is dominated by an alpha-Proteobacterium. Mar Biol 138: 843-851.
-
(2001)
Mar Biol
, vol.138
, pp. 843-851
-
-
Webster, N.S.1
Hill, R.T.2
-
91
-
-
84856583756
-
Marine sponges and their microbial symbionts: love and other relationships
-
Webster NS & Taylor MW (2012) Marine sponges and their microbial symbionts: love and other relationships. Environ Microbiol 14: 335-346.
-
(2012)
Environ Microbiol
, vol.14
, pp. 335-346
-
-
Webster, N.S.1
Taylor, M.W.2
-
92
-
-
77955263252
-
Deep sequencing reveals exceptional diversity and modes of transmission for bacterial sponge symbionts
-
Webster NS, Taylor MW, Behnam F, Lucker S, Rattei T, Whalan S, Horn M & Wagner M (2010) Deep sequencing reveals exceptional diversity and modes of transmission for bacterial sponge symbionts. Environ Microbiol 12: 2070-2082.
-
(2010)
Environ Microbiol
, vol.12
, pp. 2070-2082
-
-
Webster, N.S.1
Taylor, M.W.2
Behnam, F.3
Lucker, S.4
Rattei, T.5
Whalan, S.6
Horn, M.7
Wagner, M.8
-
94
-
-
39249083059
-
Do associated microbial abundances impact marine demosponge pumping rates and tissue densities?
-
Weisz J, Lindquist N & Martens C (2008) Do associated microbial abundances impact marine demosponge pumping rates and tissue densities? Oecologia 155: 367-376.
-
(2008)
Oecologia
, vol.155
, pp. 367-376
-
-
Weisz, J.1
Lindquist, N.2
Martens, C.3
-
95
-
-
33645027091
-
Bacterial diversity in the breadcrumb sponge Halichondria panicea (Pallas)
-
Wichels A, Würtz S, Döpke H, Schütt C & Gerdts G (2006) Bacterial diversity in the breadcrumb sponge Halichondria panicea (Pallas). FEMS Microbiol Ecol 56: 102-118.
-
(2006)
FEMS Microbiol Ecol
, vol.56
, pp. 102-118
-
-
Wichels, A.1
Würtz, S.2
Döpke, H.3
Schütt, C.4
Gerdts, G.5
-
96
-
-
0002810286
-
Microbial associations in sponges II. Numerical analysis of sponge and water bacterial populations
-
Wilkinson CR (1978) Microbial associations in sponges II. Numerical analysis of sponge and water bacterial populations. Mar Biol 49: 169-176.
-
(1978)
Mar Biol
, vol.49
, pp. 169-176
-
-
Wilkinson, C.R.1
-
97
-
-
80052060465
-
Diversity and functional analysis of luxS genes in Vibrios from marine sponges Mycale laxissima and Ircinia strobilina
-
Zan J, Fuqua C & Hill RT (2011) Diversity and functional analysis of luxS genes in Vibrios from marine sponges Mycale laxissima and Ircinia strobilina. ISME J 5: 1505-1516.
-
(2011)
ISME J
, vol.5
, pp. 1505-1516
-
-
Zan, J.1
Fuqua, C.2
Hill, R.T.3
-
98
-
-
63449139007
-
The screening of antimicrobial bacteria with diverse novel nonribosomal peptide synthetase (NRPS) genes from South China Sea sponges
-
Zhang W, Li Z, Miao X & Zhang F (2009a) The screening of antimicrobial bacteria with diverse novel nonribosomal peptide synthetase (NRPS) genes from South China Sea sponges. Mar Biotechnol 11: 346-355.
-
(2009)
Mar Biotechnol
, vol.11
, pp. 346-355
-
-
Zhang, W.1
Li, Z.2
Miao, X.3
Zhang, F.4
-
99
-
-
68049130022
-
Investigation of bacteria with polyketide synthase genes and antimicrobial activity isolated from South China Sea sponges
-
Zhang W, Zhang F, Li Z, Miao X, Meng Q & Zhang X (2009b) Investigation of bacteria with polyketide synthase genes and antimicrobial activity isolated from South China Sea sponges. J Appl Microbiol 107: 567-575.
-
(2009)
J Appl Microbiol
, vol.107
, pp. 567-575
-
-
Zhang, W.1
Zhang, F.2
Li, Z.3
Miao, X.4
Meng, Q.5
Zhang, X.6
|