Isolation and analysis of bacteria with antimicrobial activities from the marine sponge haliclona simulans collected from irish waters

Marine Biotechnology

Volumn 11, Issue 3, 2009, Pages 384-396

  Kennedy, Jonathan ^a   Baker, Paul ^a   Piper, Clare ^a   Cotter, Paul D ^a   Walsh, Marcella ^a   Mooij, Marlies J ^a   Bourke, Marie B ^a   Rea, Mary C ^b,c   O'Connor, Paula M ^b,c   Ross, R Paul ^b,c   Hill, Colin ^a,c   O'Gara, Fergal ^a   Marchesi, Julian R ^a,c,d   Dobson, Alan D W ^a  

^a UNIVERSITY COLLEGE CORK   (Ireland)

^b TEAGASC FOOD RESEARCH CENTRE   (Ireland)

^c UNIVERSITY COLLEGE CORK   (Ireland)

^d CARDIFF UNIVERSITY   (United Kingdom)

Author keywords

Antimicrobial activity; Haliclona simulans; Nonribosomal peptide synthetase; Polyketide synthase

Indexed keywords

ACTINOBACTERIA; ACTIVE AGENTS; ANTIMICROBIAL ACTIVITY; ANTIMICROBIAL SUBSTANCES; BACTERIAL ISOLATES; BIOLOGICAL ACTIVITIES; CLOSTRIDIUM DIFFICILE; COASTAL WATERS; FIRMICUTES; GRAM-NEGATIVE BACTERIA; HALICLONA SIMULANS; MARINE SPONGES; NONRIBOSOMAL PEPTIDE SYNTHETASE; PATHOGENIC YEASTS; PHYLOGENETIC ANALYSIS; POLYKETIDE SYNTHASE; PROTEOBACTERIA; PSEUDOMONAS AERUGINOSA; RESISTANT STAPHYLOCOCCUS AUREUS; SECONDARY METABOLITES;

AMINES; BACTERIOLOGY; BIOCHEMICAL ENGINEERING; BIOCHEMISTRY; ENZYMES; GENES; METABOLITES; POLYMERS;

BACTERIA;

ANTIINFECTIVE AGENT; PEPTIDE SYNTHASE; POLYKETIDE SYNTHASE; RNA 16S;

ANTIBIOTIC RESISTANCE; ANTIMICROBIAL ACTIVITY; BACTERIUM; BIOACTIVITY; COASTAL WATER; ENZYME ACTIVITY; ISOLATED POPULATION; PHYLOGENETICS; SECONDARY METABOLITE; SPONGE; YEAST;

ANIMAL; ANTIBIOSIS; ARTICLE; BACTERIUM; CLUSTER ANALYSIS; DNA SEQUENCE; GENETICS; IRELAND; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; SPECIES DIFFERENCE; SPONGE (PORIFERA);

ANIMALS; ANTI-INFECTIVE AGENTS; ANTIBIOSIS; BACTERIA; BASE SEQUENCE; CLUSTER ANALYSIS; IRELAND; MOLECULAR SEQUENCE DATA; PEPTIDE SYNTHASES; PHYLOGENY; POLYKETIDE SYNTHASES; PORIFERA; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

ATLANTIC OCEAN; IRISH SEA;

ACTINOBACTERIA; ACTINOBACTERIA (CLASS); BACILLI (CLASS); BACTERIA (MICROORGANISMS); CLOSTRIDIUM DIFFICILE; FIRMICUTES; FUNGI; HALICLONA; HALICLONA SIMULANS; NEGIBACTERIA; POSIBACTERIA; PROTEOBACTERIA; PSEUDOMONAS AERUGINOSA; PSEUDOVIBRIO; STAPHYLOCOCCUS AUREUS;

EID: 63449122196     PISSN: 14362228     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10126-008-9154-1     Document Type: Article

References (52)

1. SF Altschul TL Madden AA Schaffer J Zhang Z Zhang W Miller DJ Lipman 1997 Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Res 25 3389 3402
2. RI Amann W Ludwig KH Schleifer 1995 Phylogenetic identification and in situ detection of individual microbial cells without cultivation Microbiol Rev 59 143 169
3. A Ayuso D Clark I Gonzalez O Salazar A Anderson O Genilloud 2005 A novel actinomycete strain de-replication approach based on the diversity of polyketide synthase and nonribosomal peptide synthetase biosynthetic pathways Appl Microbiol Biotechnol 67 795 806
4. A Ayuso-Sacido O Genilloud 2005 New PCR primers for the screening of NRPS and PKS-I systems in actinomycetes: detection and distribution of these biosynthetic gene sequences in major taxonomic groups Microb Ecol 49 10 24
5. AG Barrett ML Boys TL Boehm 1996 Total synthesis of (+)-papuamine: an antifungal pentacyclic alkaloid from a marine sponge, Haliclona sp J Org Chem 61 685 699
6. JW Blunt BR Copp WP Hu MH Munro PT Northcote MR Prinsep 2007 Marine natural products Nat Prod Rep 24 31 86
7. L Cegelski GR Marshall GR Eldridge SJ Hultgren 2008 The biology and future prospects of antivirulence therapies Nat Rev Microbiol 6 17 27
8. RJ Clark MJ Garson JN Hooper 2001 Antifungal alkyl amino alcohols from the tropical marine sponge Haliclona n. sp J Nat Prod 64 1568 1571
9. P Devi J Vennam CG Naik PS Parameshwaran TV Raveendran KS Yeshwant 1998 Antifouling activity of Indian marine invertebrates against the green mussel Perna viridis L J Mar Biotechnol 6 229 232
10. R Dieckmann I Graeber I Kaesler U Szewzyk H Von Dohren 2005 Rapid screening and dereplication of bacterial isolates from marine sponges of the sula ridge by intact-cell-MALDI-TOF mass spectrometry (ICM-MS) Appl Microbiol Biotechnol 67 539 548
11. S Donadio P Monciardini M Sosio 2007 Polyketide synthases and nonribosomal peptide synthetases: the emerging view from bacterial genomics Nat Prod Rep 24 1073 109
12. JF Dubern BJ Lugtenberg GV Bloemberg 2006 The ppuI-rsaL-ppuR quorum-sensing system regulates biofilm formation of Pseudomonas putida PCL1445 by controlling biosynthesis of the cyclic lipopeptides putisolvins I and II J Bacteriol 188 2898 2906
13. DJ Edwards BL Marquez LM Nogle K Mcphail DE Goeger MA Roberts WH Gerwick 2004 Structure and biosynthesis of the jamaicamides, new mixed polyketide-peptide neurotoxins from the marine cyanobacterium Lyngbya majuscula Chem Biol 11 817 833
14. JJ Enticknap M Kelly O Peraud RT Hill 2006 Characterization of a culturable alphaproteobacterial symbiont common to many marine sponges and evidence for vertical transmission via sponge larvae Appl Environ Microbiol 72 3724 3732
15. KL Erickson JA Beutler IJ Cardellina MR Boyd 1997 Salicylihalamides A and B, novel cytotoxic macrolides from the marine sponge Haliclona sp J Org Chem 62 8188 8192
16. J Felsenstein 1985 Confidence limits on phylogenies: an approach using the bootstrap Evolution 39 783 791
17. JL Fortman DH Sherman 2005 Utilizing the power of microbial genetics to bridge the gap between the promise and the application of marine natural products Chembiochem 6 960 978
18. Y Fukunaga M Kurahashi K Tanaka K Yanagi A Yokota S Harayama 2006 Pseudovibrio ascidiaceicola sp. nov., isolated from ascidians (sea squirts) Int J Syst Evol Microbiol 56 343 347
19. N Gaitatzis B Silakowski B Kunze G Nordsiek H Blocker G Hofle R Muller 2002 The biosynthesis of the aromatic myxobacterial electron transport inhibitor stigmatellin is directed by a novel type of modular polyketide synthase J Biol Chem 277 13082 13090
20. U Hentschel M Schmid M Wagner L Fieseler C Gernert J Hacker 2001 Isolation and phylogenetic analysis of bacteria with antimicrobial activities from the Mediterranean sponges Aplysina aerophoba and Aplysina cavernicola FEMS Microbiol Ecol 35 305 312
21. Hill RT, Peraud O, Hamann MT, Noer K (2005) Manzamine producing actinomycetes. United States Patent Application
22. XY Jia ZH Tian L Shao XD Qu QF Zhao J Tang GL Tang W Liu 2006 Genetic characterization of the chlorothricin gene cluster as a model for spirotetronate antibiotic biosynthesis Chem Biol 13 575 585
23. S Jiang W Sun M Chen S Dai L Zhang Y Liu KJ Lee X Li 2007 Diversity of culturable actinobacteria isolated from marine sponge Haliclona sp Antonie van Leeuwenhoek 92 405 416
24. J Kennedy CE Codling BV Jones AD Dobson JR Marchesi 2008 Diversity of microbes associated with the marine sponge, Haliclona simulans, isolated from Irish waters and identification of polyketide synthase genes from the sponge metagenome Environ Microbiol 10 7 1888 1902
25. Kieser T, Bibb M, Buttner MJ, Chater K, Hopwood DA (2000) Practical streptomyces genetics. The John Innes Foundation, Norwich
26. TK Kim MJ Garson JA Fuerst 2005 Marine actinomycetes related to the "Salinospora" group from the Great Barrier Reef sponge Pseudoceratina clavata Environ Microbiol 7 509 518
27. TK Kim AK Hewavitharana PN Shaw JA Fuerst 2006 Discovery of a new source of rifamycin antibiotics in marine sponge actinobacteria by phylogenetic prediction Appl Environ Microbiol 72 2118 2125
28. Lane DJ (1991) 16S/23S rRNA squencing. In: Stackebrandt E, Goodfellow M (eds) Nucleic acids techniques in bacterial systematics. Wiley, Chichester
29. NA Magarvey JM Keller V Bernan M Dworkin DH Sherman 2004 Isolation and characterization of novel marine-derived actinomycete taxa rich in bioactive metabolites Appl Environ Microbiol 70 7520 7529
30. NF Montalvo NM Mohamed JJ Enticknap RT Hill 2005 Novel actinobacteria from marine sponges Antonie van Leeuwenhoek 87 29 36
31. A Muscholl-Silberhorn V Thiel JF Imhoff 2008 Abundance and bioactivity of cultured sponge-associated bacteria from the Mediterranean sea Microb Ecol 55 94 106
32. BA Neilan E Dittmann L Rouhiainen RA Bass V Schaub K Sivonen T Borner 1999 Nonribosomal peptide synthesis and toxigenicity of cyanobacteria J Bacteriol 181 4089 4097
33. CT Pabel J Vater C Wilde P Franke J Hofemeister B Adler G Bringmann J Hacker U Hentschel 2003 Antimicrobial activities and matrix-assisted laser desorption/ionization mass spectrometry of Bacillus isolates from the marine sponge Aplysina aerophoba Mar Biotechnol 5 424 434
34. M Parada JM Vinardell FJ Ollero A Hidalgo R Gutierrez AM Buendia-Claveria W Lei I Margaret FJ Lopez-Baena AM Gil-Serrano MA Rodriguez-Carvajal J Moreno JE Ruiz-Sainz 2006 Sinorhizobium fredii HH103 mutants affected in capsular polysaccharide (KPS) are impaired for nodulation with soybean and Cajanus cajan Mol Plant Microbe Interact 19 43 52
35. MA Rashid KR Gustafson JL Boswell MR Boyd 2000 Haligramides A and B, two new cytotoxic hexapeptides from the marine sponge Haliclona nigra J Nat Prod 63 956 959
36. E Richelle-Maurer JC Braekman MJ De Kluijver R Gomez G Van De Vyver RW Van Soest C Devijver 2001 Cellular location of (2R, 3R, 7Z)-2-aminotetradec-7- ene-1, 3-diol, a potent antimicrobial metabolite produced by the Caribbean sponge Haliclona vansoesti Cell Tissue Res 306 157 165
37. N Saitou M Nei 1987 The neighbor-joining method: a new method for reconstructing phylogenetic trees Mol Biol Evol 4 406 425
38. R Sakai T Higa CW Jefford G Bernardinelli 1986 Manzamine A, a novel antitumor alkaloid from a sponge J Am Chem Soc 108 6404 6405
39. Y Sera K Adachi K Fujii Y Shizuri 2002 Isolation of Haliclonamides: new peptides as antifouling substances from a marine sponge species, Haliclona Mar Biotechnol (NY) 4 441 446
40. AA Sertan-De Guzman RZ Predicala EB Bernardo BA Neilan SP Elardo GC Mangalindan D Tasdemir CM Ireland WL Barraquio GP Concepcion 2007 Pseudovibrio denitrificans strain Z143-1, a heptylprodigiosin-producing bacterium isolated from a Philippine tunicate FEMS Microbiol Lett 277 188 196
41. WY Shieh YT Lin WD Jean 2004 Pseudovibrio denitrificans gen. nov., sp. nov., a marine, facultatively anaerobic, fermentative bacterium capable of denitrification Int J Syst Evol Microbiol 54 2307 2312
42. K Tamura M Nei S Kumar 2004 Prospects for inferring very large phylogenies by using the neighbor-joining method Proc Natl Acad Sci U S A 101 11030 11035
43. K Tamura J Dudley M Nei S Kumar 2007 MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0 Mol Biol Evol 24 1596 1599
44. MW Taylor R Radax D Steger M Wagner 2007 Sponge-associated microorganisms: evolution, ecology, and biotechnological potential Microbiol Mol Biol Rev 71 295 347
45. AN Thakur NL Thakur MM Indap RA Pandit VV Datar WE Muller 2005 Antiangiogenic, antimicrobial, and cytotoxic potential of sponge-associated bacteria Mar Biotechnol 7 245 252
46. V Thiel JF Imhoff 2003 Phylogenetic identification of bacteria with antimicrobial activities isolated from Mediterranean sponges Biomolecular Engineering 20 421 423
47. NS Webster RT Hill 2001 The culturable microbial community of the Great Barrier Reef sponge Rhopaloeides odorabile is dominated by an alpha-proteobacterium Mar Biol 138 843 851
48. NS Webster KJ Wilson LL Blackall RT Hill 2001 Phylogenetic diversity of bacteria associated with the marine sponge Rhopaloeides odorabile Appl Environ Microbiol 67 434 44
49. S Yu Z Deng P Proksch W Lin 2006 Oculatol, oculatolide, and A-nor sterols from the sponge Haliclona oculata J Nat Prod 69 1330 1334
50. H Zhang YK Lee W Zhang HK Lee 2006 Culturable actinobacteria from the marine sponge Hymeniacidon perleve: isolation and phylogenetic diversity by 16S rRNA gene-RFLP analysis Antonie Van Leeuwenhoek 90 159 169
51. H Zhang W Zhang Y Jin M Jin X Yu 2008 A comparative study on the phylogenetic diversity of culturable actinobacteria isolated from five marine sponge species Antonie Van Leeuwenhoek 93 241 248
52. E Zuckerkandl L Pauling 1965 Molecules as documents of evolutionary history J Theor Biol 8 357 366