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Volumn 3, Issue 5, 2010, Pages 564-575

Culturing marine bacteria - An essential prerequisite for biodiscovery: Minireview

Author keywords

[No Author keywords available]

Indexed keywords

ALPHAPROTEOBACTERIA; BACTERIUM CULTURE; BACTERIUM ISOLATION; BIODIVERSITY; CELL ENCAPSULATION; DNA SEQUENCE; MARINE BACTERIUM; NONHUMAN; SHORT SURVEY;

EID: 77955911147     PISSN: 17517907     EISSN: 17517915     Source Type: Journal    
DOI: 10.1111/j.1751-7915.2010.00188.x     Document Type: Short Survey
Times cited : (187)

References (56)
  • 1
    • 43849089834 scopus 로고    scopus 로고
    • Microbial diversity and the genetic nature of microbial species
    • Achtman, M. Wagner, M. (2008) Microbial diversity and the genetic nature of microbial species. Nat Rev Microbiol 6 : 431 440.
    • (2008) Nat Rev Microbiol , vol.6 , pp. 431-440
    • Achtman, M.1    Wagner, M.2
  • 2
    • 70349448695 scopus 로고    scopus 로고
    • Cultivating the uncultured: Limits, advances and future challenges
    • Alain, K. Querellou, J. (2009) Cultivating the uncultured: limits, advances and future challenges. Extremophiles 13 : 583 594.
    • (2009) Extremophiles , vol.13 , pp. 583-594
    • Alain, K.1    Querellou, J.2
  • 3
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann, R.I., Ludwig, W. Schleifer, K.-H. (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59 : 143 169.
    • (1995) Microbiol Rev , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.-H.3
  • 4
    • 0002626587 scopus 로고
    • Cycling of organic matter by bacterioplankton in the pelagic marine ecosystems: Microenvironmental considerations
    • In. Fasham, M.J.R. ed.). New York, NY, USA. Plenum Publishing Corp. pp.
    • Azam, F. Ammerman, J.W. (1984) Cycling of organic matter by bacterioplankton in the pelagic marine ecosystems: microenvironmental considerations. In Flows of Energy and Materials in Marine Ecosystems. Fasham, M.J.R. (ed.). New York, NY, USA : Plenum Publishing Corp., pp. 345 360.
    • (1984) Flows of Energy and Materials in Marine Ecosystems , pp. 345-360
    • Azam, F.1    Ammerman, J.W.2
  • 5
    • 0000820590 scopus 로고
    • Chemotactic and growth responses of marine bacteria to algal extracellular products
    • Bell, W. Mitchell, R. (1972) Chemotactic and growth responses of marine bacteria to algal extracellular products. Biol Bull 143 : 265 277.
    • (1972) Biol Bull , vol.143 , pp. 265-277
    • Bell, W.1    Mitchell, R.2
  • 6
    • 24144447031 scopus 로고    scopus 로고
    • The contribution of species richness and composition to bacterial services
    • Bell, T., Newman, J.A., Silverman, B.W., Turner, S.L. Lilley, A.K. (2005) The contribution of species richness and composition to bacterial services. Nature 436 : 1157 1160.
    • (2005) Nature , vol.436 , pp. 1157-1160
    • Bell, T.1    Newman, J.A.2    Silverman, B.W.3    Turner, S.L.4    Lilley, A.K.5
  • 7
    • 0000654928 scopus 로고
    • Microbial aggregation and degradation of phytoplankton-derived detritus in seawater. I. Microbial succession
    • Biddanda, B.A. Pomeroy, L.R. (1988) Microbial aggregation and degradation of phytoplankton-derived detritus in seawater. I. Microbial succession. Mar Ecol Prog Ser 42 : 79 89.
    • (1988) Mar Ecol Prog Ser , vol.42 , pp. 79-89
    • Biddanda, B.A.1    Pomeroy, L.R.2
  • 8
    • 35448948699 scopus 로고    scopus 로고
    • Incubation of environmental samples in a diffusion chamber increases the diversity of recovered isolates
    • Bollmann, A., Lewis, K. Epstein, S.S. (2007) Incubation of environmental samples in a diffusion chamber increases the diversity of recovered isolates. Appl Environ Microbiol 73 : 6386 6390.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 6386-6390
    • Bollmann, A.1    Lewis, K.2    Epstein, S.S.3
  • 9
    • 0027847061 scopus 로고
    • Simulating bacterial clustering around phytoplankton cells in a turbulent ocean
    • Bowen, J.D., Stolzenbach, K.D. Chisholm, S.W. (1993) Simulating bacterial clustering around phytoplankton cells in a turbulent ocean. Limnol Oceanogr 38 : 36 51.
    • (1993) Limnol Oceanogr , vol.38 , pp. 36-51
    • Bowen, J.D.1    Stolzenbach, K.D.2    Chisholm, S.W.3
  • 10
    • 36049009735 scopus 로고    scopus 로고
    • Marine actinobacteria: New opportunities for natural product search and discovery
    • Bull, A.T. Stach, J.E.M. (2007) Marine actinobacteria: new opportunities for natural product search and discovery. Trends Microbiol 15 : 491 499.
    • (2007) Trends Microbiol , vol.15 , pp. 491-499
    • Bull, A.T.1    Stach, J.E.M.2
  • 11
    • 0033831330 scopus 로고    scopus 로고
    • Search and discovery strategies for biodiscovery: The paradigm shift
    • Bull, A.T., Ward, A.C. Goodfellow, M. (2000) Search and discovery strategies for biodiscovery: the paradigm shift. Microbiol Mol Biol Rev 64 : 573 606.
    • (2000) Microbiol Mol Biol Rev , vol.64 , pp. 573-606
    • Bull, A.T.1    Ward, A.C.2    Goodfellow, M.3
  • 12
    • 0347130086 scopus 로고    scopus 로고
    • Cultivation and growth characteristics of a diverse group of oligotrophic marine gammaproteobacteria
    • Cho, J.C. Giovannoni, S.J. (2004) Cultivation and growth characteristics of a diverse group of oligotrophic marine gammaproteobacteria. Appl Environ Microbiol 70 : 432 440.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 432-440
    • Cho, J.C.1    Giovannoni, S.J.2
  • 13
    • 0022515303 scopus 로고
    • Methodology for estimating numbers of free-living and attached bacteria in estuarine water
    • Clarke, K.R. Joint, I.R. (1986) Methodology for estimating numbers of free-living and attached bacteria in estuarine water. Appl Environ Microbiol 51 : 1110 1120.
    • (1986) Appl Environ Microbiol , vol.51 , pp. 1110-1120
    • Clarke, K.R.1    Joint, I.R.2
  • 14
    • 0036324056 scopus 로고    scopus 로고
    • High-throughput methods for culturing microorganisms in very low nutrient media yield diverse new marine isolates
    • Connon, S.A. Giovannoni, S.J. (2002) High-throughput methods for culturing microorganisms in very low nutrient media yield diverse new marine isolates. Appl Environ Microbiol 68 : 3878 3885.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 3878-3885
    • Connon, S.A.1    Giovannoni, S.J.2
  • 17
    • 0036233780 scopus 로고    scopus 로고
    • Advancing the quorum in Pseudomonas aeriginosa and the regulation of N-acylhomoserine lactone production and virulence gene expression
    • Diggle, S.P., Winzer, K., Lazdunski, A., Williams, P. Cámara, M. (2002) Advancing the quorum in Pseudomonas aeriginosa and the regulation of N-acylhomoserine lactone production and virulence gene expression. J Bacteriol 184 : 2576 2586.
    • (2002) J Bacteriol , vol.184 , pp. 2576-2586
    • Diggle, S.P.1    Winzer, K.2    Lazdunski, A.3    Williams, P.4    Cámara, M.5
  • 18
    • 0033916615 scopus 로고    scopus 로고
    • Culturability and in situ abundance of pelagic bacteria from the North Sea
    • Eilers, H., Pernthaler, J., Glöckner, F.O. Amann, R. (2000) Culturability and in situ abundance of pelagic bacteria from the North Sea. Appl Environ Microbiol 66 : 3044 3051.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 3044-3051
    • Eilers, H.1    Pernthaler, J.2    Glöckner, F.O.3    Amann, R.4
  • 19
    • 29144482711 scopus 로고    scopus 로고
    • Microcolony cultivation on a soil substrate membrane system selects for previously uncultured soil bacteria
    • Ferrari, B., Binnerup, S.J. Gillings, M. (2005) Microcolony cultivation on a soil substrate membrane system selects for previously uncultured soil bacteria. Appl Environ Microbiol 71 : 8714 8720.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 8714-8720
    • Ferrari, B.1    Binnerup, S.J.2    Gillings, M.3
  • 20
    • 50249237865 scopus 로고    scopus 로고
    • Cultivating previously uncultured soil bacteria using a soil substrate membrane system
    • Ferrari, B.C., Winsley, T., Gillings, M. Binnerup, S. (2008) Cultivating previously uncultured soil bacteria using a soil substrate membrane system. Nat Protoc 3 : 1261 1269.
    • (2008) Nat Protoc , vol.3 , pp. 1261-1269
    • Ferrari, B.C.1    Winsley, T.2    Gillings, M.3    Binnerup, S.4
  • 21
    • 46749116439 scopus 로고    scopus 로고
    • A rare SAR11 fosmid clone confirming genetic variability in the 'Candidatus Pelagibacter ubique' genome
    • Gilbert, J.A., Mühling, M. Joint, I. (2008) A rare SAR11 fosmid clone confirming genetic variability in the 'Candidatus Pelagibacter ubique' genome. ISME J 2 : 790 793.
    • (2008) ISME J , vol.2 , pp. 790-793
    • Gilbert, J.A.1    Mühling, M.2    Joint, I.3
  • 22
    • 71249091315 scopus 로고    scopus 로고
    • Seasonal succession of microbial communities in the Western English Channel using 16S rRNA-tag pyrosequencing of the V6 region
    • Gilbert, J.A., Field, D., Swift, P., Newbold, L., Oliver, A., Smyth, T., et al. (2009) Seasonal succession of microbial communities in the Western English Channel using 16S rRNA-tag pyrosequencing of the V6 region. Environ Microbiol 11 : 3132 3139.
    • (2009) Environ Microbiol , vol.11 , pp. 3132-3139
    • Gilbert, J.A.1    Field, D.2    Swift, P.3    Newbold, L.4    Oliver, A.5    Smyth, T.6
  • 23
    • 77955915173 scopus 로고    scopus 로고
    • Marine microbial genomics in Europe: Current status and perspectives
    • Glöckner, F.O. Joint, I. (2010) Marine microbial genomics in Europe: current status and perspectives. Microbiol Biotechnol 3 : 523 530.
    • (2010) Microbiol Biotechnol , vol.3 , pp. 523-530
    • Glöckner, F.O.1    Joint, I.2
  • 24
    • 4344605134 scopus 로고    scopus 로고
    • Cooperation and competition in pathogenic bacteria
    • Griffin, A.S., West, S.A. Bucking, A. (2004) Cooperation and competition in pathogenic bacteria. Nature 430 : 1024 1027.
    • (2004) Nature , vol.430 , pp. 1024-1027
    • Griffin, A.S.1    West, S.A.2    Bucking, A.3
  • 25
  • 26
    • 77955909842 scopus 로고    scopus 로고
    • Marine genomics: At the interface of marine microbial ecology and biodiscovery
    • Heidelberg, K.B., Gilbert, J.A. Joint, I. (2010) Marine genomics: at the interface of marine microbial ecology and biodiscovery. Microbiol Biotechnol 3 : 531 543.
    • (2010) Microbiol Biotechnol , vol.3 , pp. 531-543
    • Heidelberg, K.B.1    Gilbert, J.A.2    Joint, I.3
  • 27
    • 0017654644 scopus 로고
    • Use of Nuclepore filters for counting bacteria by fluorescence microscopy
    • Hobbie, J.E., Daley, R.J. Jasper, S. (1977) Use of Nuclepore filters for counting bacteria by fluorescence microscopy. Appl Environ Microbiol 5 : 1225 1228.
    • (1977) Appl Environ Microbiol , vol.5 , pp. 1225-1228
    • Hobbie, J.E.1    Daley, R.J.2    Jasper, S.3
  • 29
    • 43449138181 scopus 로고    scopus 로고
    • Unravelling the enigma of SAR11
    • Joint, I. (2008) Unravelling the enigma of SAR11. ISME J 2 : 455 456.
    • (2008) ISME J , vol.2 , pp. 455-456
    • Joint, I.1
  • 31
    • 34447556993 scopus 로고    scopus 로고
    • Bacterial conversations: Talking, listening and eavesdropping. An introduction
    • Joint, I., Downie, J.A. Williams, P. (2007) Bacterial conversations: talking, listening and eavesdropping. An introduction. Philos Trans R Soc Lond B Biol Sci 362 : 1115 1117.
    • (2007) Philos Trans R Soc Lond B Biol Sci , vol.362 , pp. 1115-1117
    • Joint, I.1    Downie, J.A.2    Williams, P.3
  • 32
    • 0037052320 scopus 로고    scopus 로고
    • Isolating, uncultivable' microorganisms in pure culture in a simulated natural environment
    • Kaeberlein, T., Lewis, K. Epstein, S.S. (2002) Isolating, uncultivable' microorganisms in pure culture in a simulated natural environment. Science 296 : 1127 1129.
    • (2002) Science , vol.296 , pp. 1127-1129
    • Kaeberlein, T.1    Lewis, K.2    Epstein, S.S.3
  • 33
    • 0034130307 scopus 로고    scopus 로고
    • Bacterial dormancy and culturability: The role of autocrine growth factors - Commentary
    • Kell, D.B. Young, M. (2000) Bacterial dormancy and culturability: the role of autocrine growth factors - commentary. Curr Opin Microbiol 3 : 238 243.
    • (2000) Curr Opin Microbiol , vol.3 , pp. 238-243
    • Kell, D.B.1    Young, M.2
  • 34
    • 0018423107 scopus 로고
    • A tentative direct microscopic method for counting living marine bacteria
    • Kogure, K., Simidu, U. Taga, N. (1979) A tentative direct microscopic method for counting living marine bacteria. Can J Microbiol 25 : 415 420.
    • (1979) Can J Microbiol , vol.25 , pp. 415-420
    • Kogure, K.1    Simidu, U.2    Taga, N.3
  • 36
    • 42049100522 scopus 로고    scopus 로고
    • Improved group-specific PCR primers for DGGE analysis of the genetic diversity of complex microbial communities
    • Mühling, M., Woolven-Allen, J.A., Murrell, J.C. Joint, I. (2008) Improved group-specific PCR primers for DGGE analysis of the genetic diversity of complex microbial communities. ISME J 2 : 379 392.
    • (2008) ISME J , vol.2 , pp. 379-392
    • Mühling, M.1    Woolven-Allen, J.A.2    Murrell, J.C.3    Joint, I.4
  • 37
    • 11444252559 scopus 로고    scopus 로고
    • Sociomicrobiology: The connections between quorum sensing and biofilms
    • Parsek, M.R. Greenberg, E.P. (2005) Sociomicrobiology: the connections between quorum sensing and biofilms. Trends Microbiol 13 : 27 33.
    • (2005) Trends Microbiol , vol.13 , pp. 27-33
    • Parsek, M.R.1    Greenberg, E.P.2
  • 38
    • 0036527782 scopus 로고    scopus 로고
    • Enrichment of thermophilic syntrophic anaerobic glutamate-degrading consortia using a dialysis membrane reactor
    • Plugge, C.M. Stams, A.J.M. (2002) Enrichment of thermophilic syntrophic anaerobic glutamate-degrading consortia using a dialysis membrane reactor. Microb Ecol 43 : 379 387.
    • (2002) Microb Ecol , vol.43 , pp. 379-387
    • Plugge, C.M.1    Stams, A.J.M.2
  • 40
    • 0037043731 scopus 로고    scopus 로고
    • Cultivation of the ubiquitous SAR11 marine bacterioplankton clade
    • Rappé, M.S., Conan, S.A., Vergin, K.L. Giovannoni, S.J. (2002) Cultivation of the ubiquitous SAR11 marine bacterioplankton clade. Nature 418 : 630 631.
    • (2002) Nature , vol.418 , pp. 630-631
    • Rappé, M.S.1    Conan, S.A.2    Vergin, K.L.3    Giovannoni, S.J.4
  • 43
    • 0001548496 scopus 로고
    • A comparison of a direct- and a plate-counting technique for the quantitative estimation of soil micro-organisms
    • Skinner, F.A., Jones, P.C.T. Mollison, J.E. (1952) A comparison of a direct- and a plate-counting technique for the quantitative estimation of soil micro-organisms. J Gen Microbiol 6 : 261 271.
    • (1952) J Gen Microbiol , vol.6 , pp. 261-271
    • Skinner, F.A.1    Jones, P.C.T.2    Mollison, J.E.3
  • 47
    • 0021779934 scopus 로고
    • Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitats
    • Staley, J.T. Konopka, A. (1985) Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitats. Annu Rev Microbiol 39 : 321 346.
    • (1985) Annu Rev Microbiol , vol.39 , pp. 321-346
    • Staley, J.T.1    Konopka, A.2
  • 48
    • 67649960981 scopus 로고    scopus 로고
    • Quorum sensing signal molecule synthesis and turnover in polymicrobial marine biofilms modulates communication with algal zoospores
    • Tait, K., Williams, P., Cámara, M., Williamson, H., Gan Chan, K. Joint, I. (2009) Quorum sensing signal molecule synthesis and turnover in polymicrobial marine biofilms modulates communication with algal zoospores. Environ Microbiol 11 : 1792 1802.
    • (2009) Environ Microbiol , vol.11 , pp. 1792-1802
    • Tait, K.1    Williams, P.2    Cámara, M.3    Williamson, H.4    Gan Chan, K.5    Joint, I.6
  • 49
    • 17444372781 scopus 로고    scopus 로고
    • Comparative analysis of bacterial diversity in freshwater sediment of a shallow eutrophic lake by molecular and improved cultivation-based techniques
    • Tamaki, H., Sekiguchi, Y., Hanada, S., Nakamura, K., Nomura, N., Matsumura, M. Kamagata, Y. (2005) Comparative analysis of bacterial diversity in freshwater sediment of a shallow eutrophic lake by molecular and improved cultivation-based techniques. Appl Environ Microbiol 71 : 2162 2169.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 2162-2169
    • Tamaki, H.1    Sekiguchi, Y.2    Hanada, S.3    Nakamura, K.4    Nomura, N.5    Matsumura, M.6    Kamagata, Y.7
  • 51
  • 53
    • 0033575903 scopus 로고    scopus 로고
    • Methane formation from long-chain alkanes by anaerobic microorganisms
    • Zengler, K., Richnow, H.H., Rossello-Mora, R., Michaelis, W. Widdel, F. (1999) Methane formation from long-chain alkanes by anaerobic microorganisms. Nature 401 : 266 269.
    • (1999) Nature , vol.401 , pp. 266-269
    • Zengler, K.1    Richnow, H.H.2    Rossello-Mora, R.3    Michaelis, W.4    Widdel, F.5
  • 56
    • 0002685935 scopus 로고
    • Studies on marine bacteria. I. The cultural requirements of heterotrophic aerobes
    • Zobell, C. (1941) Studies on marine bacteria. I. The cultural requirements of heterotrophic aerobes. J Mar Res 4 : 42 75.
    • (1941) J Mar Res , vol.4 , pp. 42-75
    • Zobell, C.1


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