Endozoicomonas elysicola gen. nov., sp. nov., a γ-proteobacterium isolated from the sea slug Elysia ornata

Systematic and Applied Microbiology

Volumn 30, Issue 3, 2007, Pages 202-206

  Kurahashi, Midori ^a   Yokota, Akira ^a  

^a UNIVERSITY OF TOKYO   (Japan)

Author keywords

16S rRNA gene; Endozoicomonas elysicola; Marine bacterium; New genus; Phylogeny; Sea slug; Taxonomy

Indexed keywords

BACTERIAL DNA; DNA BASE; FATTY ACID; HYDROXY FATTY ACID; QUINONE DERIVATIVE; RNA 16S; SEA WATER; SODIUM CHLORIDE;

AEROBIC BACTERIUM; ARTICLE; BACTERIAL GROWTH; BACTERIUM; BACTERIUM ISOLATION; BOOTSTRAPPING; CONTROLLED STUDY; CORAL; ELYSIA ORNATA; ENDOZOICOMONAS ELYSICOLA; GAMMAPROTEOBACTERIA; GENE SEQUENCE; GENUS; GRAM NEGATIVE SEPSIS; HALICHONDRIA OKADAI; JAPAN; MARINOBACTER; MESOPHILIC BACTERIUM; MICROBULBIFER; MOLECULAR CLONING; MOLLUSC; NONHUMAN; NUCLEOTIDE SEQUENCE; OCEANOSPIRILLUM; PHENOTYPE; PHYLOGENETIC TREE; PHYLOGENY; POCILLOPORA DAMICORNIS; PRIORITY JOURNAL; PSEUDOMONAS; SACCHAROSPIRILLUM; SPONGE (PORIFERA); STRAIN DIFFERENCE; ZOOSHIKELLA;

ANTHOZOA; BACTERIA (MICROORGANISMS); ELYSIA ORNATA; GAMMAPROTEOBACTERIA; HALICHONDRIA OKADAI; MARINOBACTER; MICROBULBIFER; NEGIBACTERIA; OCEANOSPIRILLUM; OPISTHOBRANCHIA; POCILLOPORA DAMICORNIS; PROTEOBACTERIA; PSEUDOMONAS; SACCHAROSPIRILLUM; ZOOSHIKELLA;

EID: 33947273040     PISSN: 07232020     EISSN: 16180984     Source Type: Journal    
DOI: 10.1016/j.syapm.2006.07.003     Document Type: Article

References (14)

1. Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zhang Z., Miller W., and Lipman D.J. Gapped BLAST and PSI-BLAST: new generation of protein database search programs. Nucleic Acids Res. 25 (1997) 3389-3402
2. Bourne D.G.., and Munn C.B. Diversity of bacteria associated with the coral Pocillopora damicornis from the Great Barrier Reef. Environ. Microbiol. 7 (2005) 1162-1174
3. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 (1985) 783-791
4. Hiraishi A. Direct automated sequencing of 16S rDNA amplified by polymerase chain reaction from bacterial cultures without DNA purification. Lett. Appl. Microbiol. 15 (1992) 210-213
5. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16 (1980) 111-120
6. Kurahashi M., and Yokota A. A preliminary report of phylogenetic diversity of bacterial strains isolated from marine creatures. J. Gen. Appl. Microbiol. 48 (2002) 251-259
7. Kurahashi M., and Yokota A. Agarivorans albus gen. nov., sp. nov., a γ-proteobacterium isolated from marine animals. Int. J. Syst. Evol. Microbiol. 54 (2004) 693-697
8. Lipman D.J., and Pearson W.R. Rapid and sensitive protein similarity searches. Science 227 (1985) 1435-1441
9. Marmur J. A procedure for the isolation of deoxyribonucleic acid from micro-organisms. J. Mol. Biol. 3 (1961) 208-218
10. Pearson W.R., and Lipman D.J. Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA 85 (1988) 2444-2448
11. Saitou N., and Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4 (1987) 406-425
12. Tamaoka J., and Komagata K. Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol. Lett. 25 (1984) 125-128
13. Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence aligment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
14. Yi H., Chang Y.H., Oh H.W., Bae K.S., and Chun J. Zooshikella ganghwensis gen. nov., sp. nov., isolated from tidal flat sediments,. Int. J. Syst. Evol. Microbiol. 53 (2003) 1013-1018