Correlation analysis between gene expression profile of high-fat emulsion-induced non-alcoholic fatty liver and liver regeneration in rat

Cell Biology International

Volumn 37, Issue 9, 2013, Pages 917-928

  Wang, Gaiping ^a   Li, Bing ^b   Hao, Yunpeng ^a,c   Zhi, Jia ^a,c   He, Chunxiao ^a,c   Xu, Cunshuan ^a,c  

^a HENAN NORMAL UNIVERSITY   (China)

^b XINXIANG CENTRAL HOSPITAL   (China)

^c Key Laboratory for Cell Differentiation Regulation   (China)

Author keywords

Gene expression profile; Liver regeneration; NAFLD; NASH; Physiological activity

Indexed keywords

CARBOHYDRATE; LIPID EMULSION;

ANIMAL EXPERIMENT; ANIMAL MODEL; ANIMAL TISSUE; ARTICLE; CARBOHYDRATE METABOLISM; CELL ADHESION; CELL DIFFERENTIATION; CELL MIGRATION; CELL PROLIFERATION; CLUSTER ANALYSIS; CONTROLLED STUDY; CORRELATION ANALYSIS; DISEASE CLASSIFICATION; DISEASE SEVERITY; EXPLORATORY RESEARCH; FUNCTIONAL ASSESSMENT; GENE EXPRESSION PROFILING; IMMUNE RESPONSE; INFLAMMATION; LIPID METABOLISM; LIVER REGENERATION; MALE; NONALCOHOLIC FATTY LIVER; NONHUMAN; NUCLEOTIDE SEQUENCE; RAT; RELIABILITY;

RATTUS;

EID: 84881544966     PISSN: 10656995     EISSN: 10958355     Source Type: Journal    
DOI: 10.1002/cbin.10118     Document Type: Article

References (51)

1. Adams LA, Angulo P, Lindor KD (2005) Nonalcoholic fatty liver disease. CMAJ 172: 899-905.
2. Angulo P (2002) Nonalcoholic fatty liver disease. N Engl J Med 346: 1221-31.
3. Barisione G, Fontana L, Cottalasso D, Domenicotti C, Pronzato MA, Nanni G (1993) Changes in lipoglycoprotein metabolism in toxic fatty liver. Minerva Gastroenterol Dietol 39: 101-12.
4. Beaudry JB, Pierreux CE, Hayhurst GP, Plumb-Rudewiez N, Weiss MC, Rousseau GG, Lemaigre FP (2006) Threshold levels of hepatocyte nuclear factor 6 (HNF-6) acting in synergy with HNF-4 and PGC-1alpha are required for time-specific gene expression during liver development. Mol Cell Biol 26: 6037-46.
5. Bolderson E, Tomimatsu N, Richard DJ, Boucher D, Kumar R, Pandita TK, Burma S, Khanna KK (2010) Phosphorylation of Exo1 modulates homologous recombination repair of DNA double-strand breaks. Nucleic Acids Res 38: 1821-31.
6. Botchan M (1996) Coordinating DNA replication with cell division: current status of t licensing concept. Proc Natl Acad Sci USA 93: 9997-10000.
7. Cubero FJ, Nieto N (2008) Ethanol and arachidonic acid synergize to activate Kupffer cells and modulate the fibrogenic response via tumor necrosis factor alpha, reduced glutathione, and transforming growth factor beta-dependent mechanisms.Hepatology 48: 2027-39.
8. Dai XF, Chen DF (2005) Hepatocyte proliferation in the progression of nonalcoholic fatty liver in rats. Acta Acad Med Mil Tert 27: 871-3.
9. Dai XF, Chen DF (2005) Progress in disrupted signal transduction pathway in nonalcoholic fatty liver disease regeneration. A Acad Med Mil Tert 27: 2295-7.
10. Dai XF, Chen DF (2006) Liver regeneration capacity after partial hepatectomy in rats with nonalcoholic fatty liver disease. Chin J Hepatol 14: 597-601.
11. Dai XF, Chen DF (2006) The change of p21 after the partial hepatectomy in rats with nonalcoholic fatty liver. Drug Eval 3: 362-5.
12. Fausto N, Campbell JS, Riehle KJ (2006) Live regeneration.Hepatology 43: S45-53.
13. Flanagan DE, Holt RI, Owens PC, Cockington RJ, Moore VM, Robinson JS, Godsland IF, Phillips DI (2006) Gender differences in the insulin-like growth factor axis response to a glucose load. Acta Physiol (Oxf) 187: 371-8.
14. Gramantieri L, Treré D, Chieco P, Lacchini M, Giovannini C, Piscaglia F, Cavallari A, Bolondi L (2003) In human hepatocellular carcinoma in cirrhosis proliferating cell nuclear antigen (PCNA) is involved in cell proliferation and cooperates with P21in DNA repair. J Hepatol 39: 997-1003.
15. Helyes Z, Elekes K, Sándor K, Szitter I, Kereskai L, Pinter E, Kemeny A, Szolcsányi J, McLaughlin L, Vasiliou S, Kipar A,Zimmer A, Hunt SP, Stewart JP, Quinn JP (2010) Involvement ofpreprotachykinin A gene-encoded peptides and the neurokinin1 receptor in endotoxin-induced murine airway inflammation.Neuropeptides 44: 399-406.
16. Higgins GM, Anderson RM (1931) Experimental pathology of theliver: restoration of the liver of the white rat following partial surgical removal. Arch Pathol 12: 186-202.
17. Hosack DA, Dennis G, Jr, Sherman BT, Lane HC, Lempicki RA (2003) Identifying biological themes within lists of genes with EASE. Genome Biol 4: R70.
18. Huang W, Sherman BT, Lempicki RA (2009) Systematic and integrative analysis of large gene lists using DAVID bioinfor-matics resources. Nat Protoc 4: 44-57.
19. Hussein O, Szvalb S, Van den Akker-Berman LM, Assy N (2002)Liver regeneration is not altered in patients with nonalcoholic steatohepatitis (NASH) when compared to chronic hepatitis Cinfection with similar grade of inflammation. Dig Dis Sci 47: 1926-31.
20. Kim YR, Song SY, Kim SS, An CH, Lee SH, Yoo NJ (2010)Mutational and expressional anaysis of RFC3, a clamp loader inDNA replication, in gastric and colorectal cancers. Hum Pathol 41: 1431-7.
21. Klungland A, Lindahl T (1997) Second pathway for completion of human DNA base excision-repair: reconstitution with purified proteins and requirement for DNase IV (FEN1). EMBO J 16: 3341-8.
22. Koniaris LG, McKillop IH, Schwartz SI, Zimmers TA (2003) Liver regeneration. J Am Coll Surg 197: 634-59.
23. Lannoy VJ, Decaux JF, Pierreux CE, Lemaigre FP, Rousseau GG (2002) Liver glucokinase gene expression is controlled by the onecut transcription factor hepatocyte nuclear factor-6. Diabetologia 45: 1136-41.
24. Lee DH, Pan Y, Kanner S, Sung P, Borowiec JA, Chowdhury D (2010) A PP4 phosphatase complex dephosphorylates RPA2 to facilitate DNA repair via homologous recombination. Nat Struc Mol Biol 17: 365-72.
25. Li H, Chen X, Zhang F, Ma J, Xu C (2007) Expression patterns of the cell junction-associated genes during rat liver regeneration. J Genet Genomics 34: 892-908.
26. Liu P, Qian L, Sung JS, de Souza-Pinto NC, Zheng L, Bogenhagen DF, Bohr VA, Wilson DM 3rd, Shen B, Demple B (2008) Removal of oxidative DNA damage via FEN1-dependent long-patch base excision repair in human cell mitochondria. Mol Cell Biol 28: 4975-87.
27. Margagliotti S, Clotman F, Pierreux CE, Beaudry JB, Jacquemin P, Rousseau GG, Lemaigre FP (2007) The Onecut transcription factors HNF-6/OC-1 and OC-2 regulate early liver expansion by controlling hepatoblast migration. Dev Biol 311: 579-89.
28. Neuschwander-Tetri BA, Caldwell SH (2003) Nonalcoholic steatohepatitis: summaryof an AASLD Single Topic Conference. Hepatology 37: 1202-19.
29. Otu HH, Naxerova K, Ho K, Can H, Nesbitt N, Libermann TA, Karp SJ (2007) Restoration of liver mass after injury requires proliferative and not embryonic transcriptional patterns. J Biol Chem 282: 11197-204.
30. Palmes D, Spiegel HU (2004) Animal models of liver regeneration. Biomaterials 25: 1601-11.
31. Reed LJ (2001) A trail of research from lipoic acid to alpha-keto acid dehydrogenase complexes. J Biol Chem 276: 38329-36.
32. Richardson MM, Jonsson JR, Powell EE, Brunt EM, Neuschwan-der-Tetri BA, Bhathal PS, Dixon JB, Weltman MD, Tilg H, Moschen AR, Purdie DM, Demetris AJ, Clouston AD (2007) Progressive fibrosis in nonalcoholic steatohepatitis: association with altered regeneration and a ductular reaction. Gastroenter-ology 133: 80-90.
33. Sadek CM, Pelto-Huikko M, Tujague M, Steffensen KR, Wennerholm M, Gustafsson JA (2003) TACC3 expression is tightly regulated during early differentiation. Gene Expr Patterns 3: 203-11.
34. Sato W, Horie Y, Kataoka E, Ohshima S, Dohmen T, Iizuka M, Sasaki J, Sasaki T, Hamada K, Kishimoto H, Suzuki A, Watanabe S (2006) Hepatic gene expression in hepatocyte-specific Pten deficient mice showing steatohepatitis without ethanol challenge. Hepatol Res 34: 256-65.
35. Shi W, Feng Z, Zhang J, Gonzalez-Suarez I, Vanderwaal RP, Wu X, Powell SN, Roti Roti JL, Gonzalo S, Zhang J (2010) The role of RPA2 phosphorylation in homologous recombination inresponse to replication arrest. Carcinogenesis 31: 994-1002.
36. Sydor S,Gu Y, Schlattjan M, Bechmann LP, Rauen U, Best J, Paul A,Baba HA, Sowa JP, Gerken G, Canbay A (2013) Steatosis does not impair liver regeneration after partial hepatectomy. Lab Invest 93: 20-30.
37. Taub R (2004) Liver regeneration: from myth to mechanism. Nat Rev Mol Cell Biol 5: 836-47.
38. Taub R, Greenbaum LE, Peng Y (1999) Transcriptional regulatory signals definecytokine-dependent and -independent pathways in liver regeneration. Semin Liver Dis 19: 117-27.
39. Wang GP, Xu CS (2010) Reference gene selection for real-time RT-PCR in eight kinds orat regenerating hepatic cells. MolBiotechnol 46: 49-57.
40. Wang WB, Fan JM, Zhang XL,Xu J,YaoW (2009) Serial expression analysis of liver regeneration-related genes in rat regenerating liver. Mol Biotechnol 43: 221-31.
41. Xu CS, Chang CF, Yuan JY, Li WQ, Han HP, Yang KJ, Zhao LF, Li YC, Zhang HY, Rahman S, Zhang JB (2005) Expressed genes inregenerating rat liver after partial hepatectomy. World J Gastroenterol 11: 2932-40.
42. Xu C, Chen X, Chang C, Wang G, Wang W, Zhang L, Zhu Q,Wang L, Zhang F (2010) Transcriptome analysis of hepatocytes after partial hepatectomy irats. Dev Genes Evol 220: 263-74.
43. Xu C, Wang G, Hao Y, Zhi J, Zhang L, Chang C (2011) Correlation analysis between genexpression profile of rat liver tissues and high-fat emulsion-induced nonalcoholic fatty liver. Dig Dis Sci56: 2299-308.
44. Xu CS, Chang CF (2008) Expression profiles of the genesassociated with metabolism and transport of amino acids andtheir derivatives in rat liver regeneration. Amino Acids 34: 91-102.
45. Xu X, Stern DF (2003) NFBD1/MDC1 regulates ionizing radiation-induced focus formation by DNA checkpoint signaling and repair factors. FASEB J 17: 1842-8.
46. Yin HQ, Je YT, Kim M, Kim JH, Kong G, Kang KS, Kim HL, Yoon BI, Lee MO, Lee BH (2009) Analysis of hepatic gene expression during fatty liver change due to chronic ethanol administration in mice. Toxicol Appl Pharmacol 235: 312-20.
47. Younossi ZM, Gorreta F, Ong JP, Schlauch K, Del Giacco L, Elariny H, Van Meter A, Younoszai A, Goodman Z, Baranova A, Christensen A, Grant G, Chandhoke V (2005) Hepatic gene expression in patients with obesity-related non-alcoholic steatohepatitis. Liver Int 25: 760-71.
48. Yuan X, YanS, ZhaoJ,Shi D, Yuan B, Dai W, Jiao B,ZhangW,Miao M (2011) Lipid metabolism and peroxisome proliferator-activated receptor signaling pathways participate in late-phase liver regeneration. J Proteome Res 10: 1179-90.
49. Zhai W, Xu C, Ling Y, Liu S, Deng J, Qi Y, Londos C, Xu G (2010) Increased lipolysis in adipose tissues is associated with elevation of systemic free fatty acids and insulin resistance in perilipin null mice. Horm Metab Res 42: 247-53.
50. Zhang BH, Weltman M, Farrell GC (1999) Does steatohepatitis impair liver regeneration? A study in a dietary model of nonalcoholic steatohepatitis in rats. J Gastroenterol Hepatol 14: 133-7.
51. Zou Y, Li J, Lu C, Wang J, Ge J, Huang Y, Zhang L, Wang Y (2006) High-fat emulsion-induced rat model of nonalcoholic steato-hepatitis. Life Sci 79: 1100-7.