Serial Expression Analysis of Liver Regeneration-Related Genes in Rat Regenerating Liver

Molecular Biotechnology

Volumn 43, Issue 3, 2009, Pages 221-231

  Wang, Wen Bo ^a   Fan, Jian Ming ^b   Zhang, Xiao Li ^c   Xu, Jun ^d   Yao, Wu ^b  

^a OCEAN UNIVERSITY OF CHINA   (China)

^b ZHENGZHOU UNIVERSITY   (China)

^c HENAN UNIVERSITY OF CHINESE MEDICINE   (China)

^d HENAN AGRICULTURAL UNIVERSITY   (China)

Author keywords

Gene synergy; Genes associated with liver regeneration; Rat Genome 230 2.0 array; Rat partial hepatectomy

Indexed keywords

CELL APOPTOSIS; EXPRESSION ANALYSIS; EXPRESSION LEVELS; EXPRESSION PROFILE; HIGHER-DEGREE; INFLAMMATORY RESPONSE; LIVER REGENERATION; PHYSIOLOGICAL RESPONSE; PROTEIN MODIFICATIONS; RAT LIVERS; REGULATED GENES; SYSTEMS BIOLOGY;

BIOINFORMATICS; BIOLOGY; CELL DEATH; CELL MEMBRANES; ELECTRIC REACTORS; GENE EXPRESSION; LIVER; PHYSIOLOGICAL MODELS; SIGNAL TRANSDUCTION;

PEST CONTROL;

ALPHA 1 B GLYCOPROTEIN; GLYCOPROTEIN; LIVER PROTEIN; OXIDOREDUCTASE; UNCLASSIFIED DRUG;

ANASTOMOSIS; ANIMAL TISSUE; ARTICLE; BIOCHEMISTRY; CONTROLLED STUDY; DOWN REGULATION; GENE EXPRESSION; GENE INTERACTION; GENETIC ANALYSIS; LIVER REGENERATION; MICROARRAY ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PARTIAL HEPATECTOMY; PROTEIN MODIFICATION; RAT; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SIGNAL TRANSDUCTION; UPREGULATION;

ANIMALS; CHROMOSOME MAPPING; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE REGULATORY NETWORKS; GENOME; LIVER; LIVER REGENERATION; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; RATS; REPRODUCIBILITY OF RESULTS; RNA, MESSENGER;

RATTUS;

EID: 70350575740     PISSN: 10736085     EISSN: None     Source Type: Journal    
DOI: 10.1007/s12033-009-9199-z     Document Type: Article

References (35)

1. CS Xu CF Chang JY Yuan HP Han KJ Yang LF Zhao WQ Li YC Li HY Zhang S Rahman JB Zhang 2004 Identification and characterization of 177 unreported genes associated with liver regeneration Genomics Proteomics Bioinformatics 2 109 118 1:CAS:528:DC%2BD2MXis1Klt7Y%3D
2. R Taub 2004 Liver regeneration: From myth to mechanism Nature Reviews Molecular Cell Biology 5 836 847 10.1038/nrm1489 1:CAS:528:DC%2BD2cXotVSlsr0%3D (Pubitemid 39336277)
3. GM Higgins RM Anderson 1931 Experimental pathology of the liver: Restoration of the liver of the white rat following partial surgical removal Archives of Pathology 12 186 202
4. LF Zhao WM Zhang CS Xu 2006 Expression patterns and action analysis of genes associated with blood coagulation responses during rat liver regeneration World Journal of Gastroenterology 12 6842 6849 1:CAS:528:DC%2BD28XhtlCkur7N
5. O Dransfeld T Gehrmann K Köhrer G Kircheis C Holneicher D Häussinger M Wettstein 2005 Oligonucleotide microarray analysis of differential transporter regulation in the regenerating rat liver Liver International 25 1243 1258 10.1111/j.1478-3231.2005.01158.x 1:CAS:528: DC%2BD28XkslSrtQ%3D%3D (Pubitemid 41782571)
6. N Fausto JS Campbell KJ Riehle 2006 Liver regeneration Hepatology 43 S45 S53 10.1002/hep.20969 1:CAS:528:DC%2BD28XhvVSkt70%3D (Pubitemid 43303968)
7. N Fausto 2000 Liver regeneration Journal of Hepatology 32 19 31 10.1016/S0168-8278(00)80412-2 1:CAS:528:DC%2BD3cXisFOns7k%3D
8. CS Xu CF Chang JY Yuan WQ Li HP Han KJ Yang LF Zhao YC Li HY Zhang S Rahman JB Zhang 2005 Expressed genes in regenerating rat liver after partial hepatectomy World Journal of Gastroenterology 11 2932 2940 1:CAS:528: DC%2BD2MXlsFyhurs%3D
9. Y Fukuhara A Hirasawa XK Li M Kawasaki M Fujino N Funeshima S Katsuma S Shiojima M Yamada T Okuyama S Suzuki G Tsujimoto 2003 Gene expression profile in the regenerating rat liver after partial hepatectomy Journal of Hepatology 38 784 792 10.1016/S0168-8278(03)00077-1 1:CAS:528:DC%2BD3sXjvFWnsL8%3D (Pubitemid 36613345)
10. JH Knepp MA Geahr MS Forman A Valsamakis 2003 Comparison of automated and manual nucleic acid extraction methods for detection of enterovirus RNA Journal of Clinical Microbiology 41 3532 3536 10.1128/JCM.41.8.3532-3536.2003 1:CAS:528:DC%2BD3sXnt1SltLs%3D (Pubitemid 37006379)
11. S Nuyts L Van Mellaert P Lambin J Anné 2001 Efficient isolation of total RNA from clostridium without DNA contamination Journal of Microbiological Methods 44 235 238 10.1016/S0167-7012(01)00219-6 1:CAS:528:DC%2BD3MXhs1eisb8%3D (Pubitemid 32182375)
12. A Arkin J Ross HH McAdams 1998 Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells Genetics 149 1633 1648 1:CAS:528:DyaK1cXlsFehtr8%3D
13. L Li J Roden BE Shapiro S Bhatia SJ Forman R Bhatia 2005 Reproducibility, fidelity, and discriminant validity of mRNA amplification for microarray analysis from primary hematopoietic cells Journal of Molecular Diagnostics 7 48 56 1:CAS:528:DC%2BD2MXhvFKrtrs%3D
14. JF Collins 2006 Gene chip analyses reveal differential genetic responses to iron deficiency in rat duodenum and jejunum Biological Research 39 25 37 1:CAS:528:DC%2BD28XovVeqtb8%3D
15. Eisen, M. B., Spellman, P. T., Brown, P. O., Botstein., & D. (1998). Cluster analysis and display of genome-wide expression patterns. Proceesings of the National Academy of Sciences, 95, 14863-14868.
16. T Werner 2001 Cluster analysis and promoter modelling as bioinformatics tools for the identification of target genes from expression array data Pharmacogenomics 2 25 36 10.1517/14622416.2.1.25 1:CAS:528:DC%2BD3MXitVKhtLY%3D (Pubitemid 32633649)
17. Tong, H. (1978). On a threshold model. Pattern recognition and signal processing. In C. H. Chen (Ed.), NATO ASI series E: Applied Sc No. 29. Alphen aan den Rijn, The Netherland: Sijthoff & Noordhoff.
18. A Cumano I Godin 2007 Ontogeny of the hematopoietic system Annual Review of Immunology 25 745 785 10.1146/annurev.immunol.25.022106.141538 1:CAS:528:DC%2BD2sXltlans70%3D (Pubitemid 46697923)
19. G Andersson BM Peterlin 1990 NF-X2 that binds to the DRA X2-box is activator protein 1. Expression cloning of c-Jun Journal of Immunology 145 3456 3462 1:CAS:528:DyaK3MXhsFyitLk%3D
20. JA Sanders PA Gruppuso 2006 Coordinated regulation of c-Myc and Max in rat liver development American Journal of Physiology Gastrointestinal Liver Physiology 290 G145 G155 10.1152/ajpgi.00545.2004 1:CAS:528:DC%2BD28XhsVSit78%3D
21. M Hollborn F Faude P Wiedemann L Kohen 2003 Elevated proto-oncogene and collagen mRNA expression in PVR retinas Graefes Archive of Clinical and Experimental Ophthalmology 241 439 446 10.1007/s00417-003-0664-2 1:CAS:528:DC%2BD3sXjvFClu70%3D
22. AG Vicencio O Eickelberg MC Stankewich M Kashgarian GG Haddad 2002 Regulation of TGF-beta ligand and receptor expression in neonatal rat lungs exposed to chronic hypoxia Journal of Applied Physiology 93 1123 1130 1:CAS:528:DC%2BD38Xnt1art70%3D
23. CG Frondoza A Sohrabi A Polotsky PV Phan DS Hungerford L Lindmark 2004 An in vitro screening assay for inhibitors of proinflammatory mediators in herbal extracts using human synoviocyte cultures In Vitro Cellular and Developmental Biology Animal 40 95 101 10.1290/1543-706X(2004)040<0095:AIVSAF>2.0.CO;2 1:CAS:528:DC%2BD2cXnslSlu7w%3D (Pubitemid 39096224)
24. S Berger R Chandra H Balló R Hildenbrand HJ Stutte 1997 Immune complexes are potent inhibitors of interleukin-12 secretion by human monocytes European Journal of Immunology 27 2994 3000 10.1002/eji.1830271136 1:CAS:528:DyaK2sXnt1Ojtr0%3D (Pubitemid 27478373)
25. S Lacraz LP Nicod R Chicheportiche HG Welgus JM Dayer 1995 IL-10 inhibits metalloproteinase and stimulates TIMP-1 production in human mononuclear phagocytes Journal of Clinical Investigation 96 2304 2310 10.1172/JCI118286 1:CAS:528:DyaK28XltF2itA%3D%3D
26. S Rivera C Ogier J Jourquin S Timsit AW Szklarczyk K Miller AJ Gearing L Kaczmarek M Khrestchatisky 2002 Gelatinase B and TIMP-1 are regulated in a cell- and time-dependent manner in association with neuronal death and glial reactivity after global forebrain ischemia European Journal of Neuroscience 15 19 32 10.1046/j.0953-816x.2001.01838.x (Pubitemid 35478006)
27. M Vairapandi AG Balliet B Hoffman DA Liebermann 2002 GADD45b and GADD45 g are cdc2/cyclinB1 kinase inhibitors with a role in S and G2/M cell cycle checkpoints induced by genotoxic stress Journal of Cellular Physiology 192 327 338 10.1002/jcp.10140 1:CAS:528:DC%2BD38XlvFertbY%3D (Pubitemid 34827609)
28. M Vairapandi AG Balliet AJ Fornace Jr B Hoffman DA Liebermann 1996 The differentiation primary response gene MyD118, related to GADD45, encodes for a nuclear protein which interacts with PCNA and p21WAF1/CIP1 Oncogene 12 2579 2594 1:CAS:528:DyaK28XktlKlt7g%3D
29. JH Albrecht LK Hansen 1999 Cyclin D1 promotes mitogen-independent cell cycle progression in hepatocytes Cell Growth and Difference 10 397 404 1:CAS:528:DyaK1MXktVCnu70%3D
30. S Goldstone S Pavey A Forrest J Sinnamon B Gabrielli 2001 Cdc25-dependent activation of cyclin A/cdk2 is blocked in G2 phase arrested cells independently of ATM/ATR Oncogene 20 921 932 10.1038/sj.onc.1204177 1:CAS:528: DC%2BD3MXhvFSkt7Y%3D (Pubitemid 32207109)
31. JH Ruth S Shahrara CC Park JC Morel P Kumar S Qin AE Koch 2003 Role of macrophage inflammatory protein-3alpha and its ligand CCR6 in rheumatoid arthritis Laboratory Investigation 83 579 588 1:CAS:528:DC%2BD3sXisFCjsLk%3D
32. GP Vigers LJ Anderson P Caffes BJ Brandhuber 1997 Crystal structure of the type-I interleukin-1 receptor complexed with interleukin-1beta Nature 386 190 194 10.1038/386190a0 1:CAS:528:DyaK2sXhvFSqu7c%3D (Pubitemid 27131448)
33. RF Lamb RF Hennigan K Turnbull KD Katsanakis ED MacKenzie GD Birnie BW Ozanne 1997 AP-1-mediated invasion requires increased expression of the hyaluronan receptor CD44 Molecular and Cellular Biology 17 963 976 1:CAS:528:DyaK2sXmvV2muw%3D%3D
34. U Utans-Schneitz H Lorez WE Klinkert J da Silva W Lesslauer 1998 A novel rat CC chemokine, identified by targeted differential display, is upregulated in brain inflammation Journal of Neuroimmunology 92 179 190 10.1016/S0165-5728(98) 00204-5 1:CAS:528:DyaK1cXnvVWisL8%3D (Pubitemid 29016003)
35. Y Wang JS Suominen M Parvinen A Rivero-Muller S Kiiveri M Heikinheimo I Robbins J Toppari 2005 The regulated expression of c-IAP1 and c-IAP2 during the rat seminiferous epithelial cycle plays a role in the protection of germ cells from Fas-mediated apoptosis Molecular and Cellular Endocrinology 245 111 120 10.1016/j.mce.2005.11.004 1:CAS:528:DC%2BD28XitFOqsQ%3D%3D