Transcriptome analysis of hepatocytes after partial hepatectomy in rats

Development Genes and Evolution

Volumn 220, Issue 9-10, 2010, Pages 263-274

  Xu, Cunshuan ^a   Chen, Xiaoguang ^a,b   Chang, Cuifang ^a,b   Wang, Gaiping ^a   Wang, Wenbo ^a   Zhang, Lianxing ^a   Zhu, Qiushi ^a   Wang, Lei ^a   Zhang, Fuchun ^b  

^a HENAN NORMAL UNIVERSITY   (China)

^b XINJIANG UNIVERSITY   (China)

Author keywords

Gene transcription profiling; Hepatocyte; Partial hepatectomy; Rat liver regeneration

Indexed keywords

TRANSCRIPTOME;

AMINO ACID METABOLISM; ANIMAL CELL; ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; CELL ADHESION; CELL ENLARGEMENT; CELL PROLIFERATION; CLUSTER ANALYSIS; CONTROLLED STUDY; DEFENSE MECHANISM; DENSITY GRADIENT CENTRIFUGATION; DNA REPLICATION; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE FUNCTION; LIPID METABOLISM; LIVER CELL; LIVER REGENERATION; MICROARRAY ANALYSIS; NONHUMAN; PARTIAL HEPATECTOMY; PRIORITY JOURNAL; RAT; REAL TIME POLYMERASE CHAIN REACTION; RNA ANALYSIS;

ANIMALS; GENE EXPRESSION PROFILING; HEPATECTOMY; HEPATOCYTES; LIVER; POLYMERASE CHAIN REACTION; RATS; RATS, SPRAGUE-DAWLEY; REGENERATION;

RATTUS;

EID: 78651243302     PISSN: 0949944X     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00427-010-0345-1     Document Type: Article

References (38)

1. US Bhalla R Iyengar 1999 Emergent properties of networks of biological signaling pathways Science 283 339 340 10.1126/science.283.5400.339 (Pubitemid 29045278)
2. RH Birkhahn S Awad NR Thomford 1994 Parenteral monoacetoacetin and liver regeneration interaction after partial hepatectomy in the rat JPEN J Parenter Enteral Nutr 18 219 224 1:STN:280:DyaK2czktlKrsg%3D%3D 10.1177/ 0148607194018003219 8064996
3. M Botchan 1996 Coordinating DNA replication with cell division: current status of the licensing concept Proc Natl Acad Sci USA 93 9997 10000 1:CAS:528:DyaK28XlslGksL0%3D 10.1073/pnas.93.19.9997 8816736
4. H Chung HJ Kim KS Jang, et al. 2006 Comprehensive analysis of differential gene expression profiles on diclofenac-induced acute mouse liver injury and recovery Toxicol Lett 166 77 87 1:CAS:528:DC%2BD28Xosl2ksrY%3D 10.1016/j.toxlet.2006.05.016 16859844 (Pubitemid 44279307)
5. JF Collins 2006 Gene chip analyses reveal differential genetic responses to iron deficiency in rat duodenum and jejunum Biol Res 39 25 37 1:CAS:528:DC%2BD28XovVeqtb8%3D 16629162
6. A De Rossi LB Rocha MA Rossi 2007 Application of fluorescence microscopy on hematoxylin and eosin-stained sections of healthy and diseased teeth and supporting structures J Oral Pathol Med 36 377 381 10.1111/j.1600-0714.2007. 00542.x 17559501 (Pubitemid 46889877)
7. C Desbois-Mouthon D Wendum A Cadoret, et al. 2006 Hepatocyte proliferation during liver regeneration is impaired in mice with liver-specific IGF-1R knockout FASEB J 20 773 775 1:CAS:528:DC%2BD28XjtlOiu7w%3D 16484330
8. AM Diehl RM Rai 1996 Liver regeneration 3: regulation of signal transduction during liver regeneration FASEB J 10 215 227 1:CAS:528: DyaK28XhsFOrtL4%3D 8641555
9. O Dransfeld T Gehrmann K Köhrer G Kircheis C Holneicher D Häussinger M Wettstein 2005 Oligonucleotide microarray analysis of differential transporter regulation in the regenerating rat liver Liver Int 25 1243 1258 1:CAS:528:DC%2BD28XkslSrtQ%3D%3D 10.1111/j.1478-3231.2005.01158.x 16343078 (Pubitemid 41782571)
10. MD Estes J Do CH Ahn 2009 On chip cell separator using magnetic bead-based enrichment and depletion of various surface markers Biomed Microdevices 11 509 515 1:CAS:528:DC%2BD1MXivVOnu7k%3D 10.1007/s10544-008-9257-5 19082734
11. MB Fallon MH Nathanson A Mennone JC Sáez AD Burgstahler JM Anderson 1995 Altered expression and function of hepatocyte gap junctions after common bile duct ligation in the rat Am J Physiol 268 C1186 C1194 1:CAS:528:DyaK2MXlvVajtLw%3D 7762611
12. N Fausto 2000 Liver regeneration J Hepatol 607 19 31 10.1016/S0168- 8278(00)80412-2
13. KE Fladmark BT Gjertsen A Molven G Mellgren OK Vintermyr SO Døskeland 1997 Gap junctions and growth control in liver regeneration and in isolated rat hepatocytes Hepatology 25 847 855 1:CAS:528:DyaK2sXislejtLs%3D 10.1002/hep.510250411 9096587 (Pubitemid 27157125)
14. Y Fukuhara A Hirasawa XK Li, et al. 2003 Gene expression profile in the regenerating rat liver after partial hepatectomy J Hepatol 38 784 792 1:CAS:528:DC%2BD3sXjvFWnsL8%3D 10.1016/S0168-8278(03)00077-1 12763372 (Pubitemid 36613345)
15. F Guo H Nian H Zhang L Huang Y Tang X Xiao D He 2006 Proteomic analysis of the transition from quiescent to proliferating stages in rat liver hepatectomy model Proteomics 6 3075 3086 1:CAS:528:DC%2BD28XlsFagtrY%3D 10.1002/pmic.200500322 16619303 (Pubitemid 43806405)
16. F Hamel M Grondin F Denizeau DA Averill-Bates F Sarhan 2006 Wheat extracts as an efficient cryoprotective agent for primary cultures of rat hepatocytes Biotechnol Bioeng 95 661 670 1:CAS:528:DC%2BD28XhtFarsbvL 10.1002/bit.20953 16927246 (Pubitemid 44671468)
17. GM Higgins RM Anderson 1931 Experimental pathology of the liver: restoration of the liver of the white rat following partial surgical removal Arch Pathol 12 186 202
18. H Jaeschke 2006 Mechanisms of liver injury. II. Mechanisms of neutrophil-induced liver cell injury during hepatic ischemia-reperfusion and other acute inflammatory conditions Am J Physiol Gastrointest Liver Physiol 290 G1083 G1088 1:CAS:528:DC%2BD28XlvVeis78%3D 10.1152/ajpgi.00568.2005 16687579 (Pubitemid 43788288)
19. AZ Khan SS Mudan 2007 Liver regeneration: mechanisms, mysteries and more ANZ J Surg 77 9 14 10.1111/j.1445-2197.2006.03981.x 17295811 (Pubitemid 46145614)
20. K Kibler J Svetz TL Nguyen C Shaw G Shaulsky 2003 A cell-adhesion pathway regulates intercellular communication during Dictyostelium development Dev Biol 264 506 521 1:CAS:528:DC%2BD3sXpsVSitLc%3D 10.1016/j.ydbio.2003.08.025 14651934 (Pubitemid 37490984)
21. G Landemore C Debout M Quillec J Izard 1984 Isolation of Kurloff cells by Percoll density gradient centrifugation: protein labeling with 35S-methionine of these cells Biol Cell 50 121 126 1:CAS:528:DyaL2cXkvVKktr8%3D 6331556
22. H Li X Chen F Zhang J Ma C Xu 2007 Expression patterns of the cell junction-associated genes during rat liver regeneration J Genet Genomics 34 892 908 1:CAS:528:DC%2BD2sXht1alu7nP 10.1016/S1673-8527(07)60101-5 17945168 (Pubitemid 47566415)
23. J Locker J Tian R Carver D Concas C Cossu GM Ledda-Columbano A Columbano 2003 A common set of immediate-early response genes in liver regeneration and hyperplasia Hepatology 38 314 325 1:CAS:528:DC%2BD3sXmvFSmtbw%3D 10.1053/jhep.2003.50299 12883475 (Pubitemid 36919852)
24. GK Michalopoulos M DeFrances 2005 Liver regeneration Adv Biochem Engin/Biotechnol 93 101 134 1:CAS:528:DC%2BD2MXjs1Oht7Y%3D
25. GK Michalopoulos Z Khan 2005 Liver regeneration, growth factors, and amphiregulin Gastroenterology 128 503 506 1:CAS:528:DC%2BD2MXitVemtr8%3D 10.1053/j.gastro.2004.12.039 15685562 (Pubitemid 40431103)
26. R Milo S Shen-Orr S Itzkovitz N Kashtan D Chklovskii U Alon 2002 Network motifs: simple building blocks of complex networks Science 298 824 827 1:CAS:528:DC%2BD38XotFSntb4%3D 10.1126/science.298.5594.824 12399590 (Pubitemid 35231534)
27. D Palmes HU Spiegel 2004 Animal models of liver regeneration Biomaterials 25 1601 1611 1:CAS:528:DC%2BD3sXpvFelsLg%3D 10.1016/S0142-9612(03)00508-8 14697862 (Pubitemid 38091539)
28. GR Post JH Brown 1996 G protein-coupled receptors and signaling pathways regulating growth responses FASEB J 10 741 749 1:CAS:528:DyaK28Xjtl2gt70%3D 8635691
29. JP Revel SB Yancey DJ Meyer B Nicholson 1980 Cell junctions and intercellular communication In Vitro 16 1010 1017 1:STN:280:DyaL3M7ms1Cnsg%3D%3D 10.1007/BF02619251 7216231
30. CL Stoick-Cooper RT Moon G Weidinger 2007 Advances in signaling in vertebrate regeneration as a prelude to regenerative medicine Genes Dev 21 1292 1315 1:CAS:528:DC%2BD2sXmsFSgsb4%3D 10.1101/gad.1540507 17545465 (Pubitemid 46871034)
31. S Togo H Makino T Kobayashi, et al. 2004 Mechanism of liver regeneration after partial hepatectomy using mouse cDNA microarray J Hepato 40 464 471 1:CAS:528:DC%2BD2cXhsFWis7g%3D 10.1016/j.jhep.2003.11.005 (Pubitemid 38230848)
32. FW Vondran E Katenz R Schwartlander, et al. 2008 Isolation of primary human hepatocytes after partial hepatectomy: criteria for identification of the most promising liver specimen Artif Organs 32 205 213 10.1111/j.1525-1594.2007. 00524.x 18201288 (Pubitemid 351326754)
33. Wang GP, Xu CS (2010) Reference gene selection for real-time RT-PCR in eight kinds of rat regenerating hepatic cells. Mol Biotechnol 46:49-57
34. WB Wang JM Fan XL Zhang J Xu W Yao 2009 Serial expression analysis of liver regeneration-related genes in rat regenerating liver Mol Biotechnol 43 221 231 1:CAS:528:DC%2BD1MXht1Cmtb3J 10.1007/s12033-009-9199-z 19672731
35. T Werner 2001 Cluster analysis and promoter modeling as bioinformatics tools for the identification of target genes from expression array data Pharmacogenomics 2 25 36 1:CAS:528:DC%2BD3MXitVKhtLY%3D 10.1517/14622416.2.1.25 11258194 (Pubitemid 32633649)
36. Y Xie C Wang L Li Y Ma Y Yin Q Xiao 2009 Overexpression of E2F-1 inhibits progression of gastric cancer in vitro Cell Biol Int 33 640 649 1:CAS:528:DC%2BD1MXms1Ojs7c%3D 10.1016/j.cellbi.2009.02.015 19289176
37. CS Xu CF Chang JY Yuan, et al. 2005 Expressed genes in regenerating rat liver after partial hepatectomy World J Gastroenterol 11 2932 2940 1:CAS:528:DC%2BD2MXlsFyhurs%3D 15902731
38. CS Xu XK Xing XG Yang, et al. 2009 Hydrodynamics-based transgene directively into rat regenerating liver in vivo Acta Anatomica Sinica 40 599 603 1:CAS:528:DC%2BC3cXivVOjtQ%3D%3D