Isotope-coded ATP probe for quantitative affinity profiling of ATP-binding proteins

Analytical Chemistry

Volumn 85, Issue 15, 2013, Pages 7478-7486

  Xiao, Yongsheng ^a   Guo, Lei ^a   Wang, Yinsheng ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACYLATING AGENTS; ATP-BINDING SITE; CELLULAR PROCESS; FALSE-POSITIVE IDENTIFICATIONS; LYSINE RESIDUES; NUCLEOTIDE-BINDING SITES; PROLIFERATING CELL NUCLEAR ANTIGENS; QUANTITATIVE ASSESSMENTS;

AMINO ACIDS; BINDING SITES; CELL PROLIFERATION; ISOTOPES; PROBES;

PROTEINS;

ADENOSINE TRIPHOSPHATE; ISOTOPE; PROTEOME;

AMINO ACID SEQUENCE; ARTICLE; BINDING SITE; CHEMICAL STRUCTURE; CHEMISTRY; HELA CELL; HUMAN; METABOLISM; METHODOLOGY; MOLECULAR GENETICS; MOLECULAR PROBE; PROTEIN CONFORMATION; PROTEOMICS; REPRODUCIBILITY;

ADENOSINE TRIPHOSPHATE; AMINO ACID SEQUENCE; BINDING SITES; HELA CELLS; HUMANS; ISOTOPES; MODELS, MOLECULAR; MOLECULAR PROBES; MOLECULAR SEQUENCE DATA; PROTEIN CONFORMATION; PROTEOME; PROTEOMICS; REPRODUCIBILITY OF RESULTS;

EID: 84881320082     PISSN: 00032700     EISSN: 15206882     Source Type: Journal    
DOI: 10.1021/ac401415z     Document Type: Article

References (31)

1. Chene, P. Nat. Rev. Drug Discovery 2002, 1, 665-673
2. Manning, G.; Whyte, D. B.; Martinez, R.; Hunter, T.; Sudarsanam, S. Science 2002, 298, 1912-1934
3. Daub, H.; Olsen, J. V.; Bairlein, M.; Gnad, F.; Oppermann, F. S.; Stemmann, O.; Mann, M. Mol. Cell 2008, 31, 438-448
4. Zhang, Y. N.; Yu, D. J.; Li, S. S.; Fan, Y. X.; Huang, Y.; Shen, H. B. BMC Bioinformatics 2012, 13, 118
5. Ormö, M.; Sjöberg, B.-M. Anal. Biochem. 1990, 189, 138-141
6. Guarnieri, M. T.; Blagg, B. S.; Zhao, R. Assay Drug Dev. Technol. 2011, 9, 174-183
7. Xiao, Y.; Guo, L.; Jiang, X.; Wang, Y. Anal. Chem. 2013, 85, 3198-3206
8. Patricelli, M. P.; Szardenings, A. K.; Liyanage, M.; Nomanbhoy, T. K.; Wu, M.; Weissig, H.; Aban, A.; Chun, D.; Tanner, S.; Kozarich, J. W. Biochemistry 2006, 46, 350-358
9. Ong, S.-E.; Blagoev, B.; Kratchmarova, I.; Kristensen, D. B.; Steen, H.; Pandey, A.; Mann, M. Mol. Cell. Proteomics 2002, 1, 376-386
10. Boersema, P. J.; Raijmakers, R.; Lemeer, S.; Mohammed, S.; Heck, A. J. R. Nat. Protoc. 2009, 4, 484-494
11. Qiu, H.; Wang, Y. Anal. Chem. 2007, 79, 5547-5556
12. Saraste, M.; Sibbald, P. R.; Wittinghofer, A. Trends Biochem. Sci. 1990, 15, 430-434
13. Weerapana, E.; Wang, C.; Simon, G. M.; Richter, F.; Khare, S.; Dillon, M. B. D.; Bachovchin, D. A.; Mowen, K.; Baker, D.; Cravatt, B. F. Nature 2010, 468, 790-795
14. Li, X.; Liu, D. R. Angew. Chem., Int. Ed. 2004, 43, 4848-4870
15. Huang, D. W.; Sherman, B. T.; Lempicki, R. A. Nat. Protoc. 2008, 4, 44-57
16. Varjosalo, M.; Björklund, M.; Cheng, F.; Syvänen, H.; Kivioja, T.; Kilpinen, S.; Sun, Z.; Kallioniemi, O.; Stunnenberg, H. G.; He, W.-W.; Ojala, P.; Taipale, J. Cell 2008, 133, 537-548
17. Ali, M. M. U.; Roe, S. M.; Vaughan, C. K.; Meyer, P.; Panaretou, B.; Piper, P. W.; Prodromou, C.; Pearl, L. H. Nature 2006, 440, 1013-1017
18. Obermann, W. M.; Sondermann, H.; Russo, A. A.; Pavletich, N. P.; Hartl, F. U. J. Cell Biol. 1998, 143, 901-910
19. Schwartz, D.; Gygi, S. P. Nat. Biotechnol. 2005, 23, 1391-1398
20. Dey, M.; Cao, C.; Dar, A. C.; Tamura, T.; Ozato, K.; Sicheri, F.; Dever, T. E. Cell 2005, 122, 901-913
21. Soti, C.; Vermes, A.; Haystead, T. A. J.; Csermely, P. Eur. J. Biochem. 2003, 270, 2421-2428
22. Soti, C.; Racz, A.; Csermely, P. J. Biol. Chem. 2002, 277, 7066-7075
23. Manoj, N.; Strauss, E.; Begley, T. P.; Ealick, S. E. Structure 2003, 11, 927-936
24. Noiva, R.; Lennarz, W. J. J. Biol. Chem. 1992, 267, 3553-3556
25. Guthapfel, R.; Guéguen, P.; Quéméneur, E. J. Biol. Chem. 1996, 271, 2663-2666
26. Chen, S.; Levin, M. K.; Sakato, M.; Zhou, Y.; Hingorani, M. M. J. Mol. Biol. 2009, 388, 431-442
27. Kubala, M.; Plasek, J.; Amler, E. Physiol. Res. 2004, 53, 109-113
28. Stewart, R. C.; VanBruggen, R.; Ellefson, D. D.; Wolfe, A. J. Biochemistry 1998, 37, 12269-12279
29. Ni, Q.; Shaffer, J.; Adams, J. A. Protein Sci. 2000, 9, 1818-1827
30. Marek, M.; Milles, S.; Schreiber, G.; Daleke, D. L.; Dittmar, G.; Herrmann, A.; Müller, P.; Pomorski, T. G. J. Biol. Chem. 2011, 286, 21835-21843
31. Fukuda, K.; Morioka, H.; Imajou, S.; Ikeda, S.; Ohtsuka, E.; Tsurimoto, T. J. Biol. Chem. 1995, 270, 22527-22534