Probing adenosine nucleotide-binding proteins with an affinity-labeled nucleotide probe and mass spectrometry

Analytical Chemistry

Volumn 79, Issue 15, 2007, Pages 5547-5556

  Qiu, Haibo ^a   Wang, Yinsheng ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL ANALYSIS; ENZYMATIC DIGESTION; NUCLEOTIDE ANALOGUES; NUCLEOTIDE-BINDING PROTEINS;

BINDING ENERGY; ESCHERICHIA COLI; MASS SPECTROMETRY; NUCLEOTIDES; REACTION KINETICS;

PEPTIDES;

ADENOSINE; ADENOSINE NUCLEOTIDE BINDING PROTEIN; ALCOHOL DEHYDROGENASE; BINDING PROTEIN; BIOTIN; LYSINE; NUCLEOTIDE; PEPTIDE; RECOMBINASE; RECOMBINASE A; SACCHAROMYCES CEREVISIAE ALCOHOL DEHYDROGENASE I; UNCLASSIFIED DRUG;

AFFINITY LABELING; ARTICLE; BINDING SITE; CELL LINE; CELL LYSATE; ENZYME PURIFICATION; HELA CELL; HUMAN; HUMAN CELL; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; NONHUMAN; PROTEIN ANALYSIS; PROTEIN DEGRADATION; PROTEIN SYNTHESIS; REACTION ANALYSIS; TANDEM MASS SPECTROMETRY;

ADENOSINE; ADENOSINE TRIPHOSPHATE; AFFINITY LABELS; ALCOHOL DEHYDROGENASE; AMINO ACID SEQUENCE; BINDING SITES; BIOTIN; ESCHERICHIA COLI; HUMANS; ISOTOPE LABELING; LYSINE; MASS SPECTROMETRY; MOLECULAR PROBES; MOLECULAR SEQUENCE DATA; NUCLEOTIDES; REC A RECOMBINASES; SACCHAROMYCES CEREVISIAE; TIME FACTORS; TRYPSIN; TUMOR CELLS, CULTURED;

EID: 34547739476     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac0622375     Document Type: Article

References (35)

1. de Hoffmann, E.; Stroobant, V. Mass Spectrometry: Principles and Applications, 2nd ed.; John Wiley & Sons: New York, 2001.
2. Wolters, D. A.; Washburn, M. P.; Yates, J. R. Anal. Chem. 2001, 73, 5683-5690.
3. Link, A. J.; Eng, J.; Schieltz, D. M.; Carmack, E.; Mize, G. J.; Morris, D. R.; Garvik, B. M.; Yates, J. R. Nat. Biotechnol. 1999, 17, 676-682.
4. Leitner, A.; Lindner, W. J. Chromatogr., B: Anal. Technol. Biomed. Life Sci. 2004, 813, 1-26.
5. Gygi, S. P.; Rist, B.; Gerber, S. A.; Turecek, F.; Gelb, M. H.; Aebersold, R. Nat. Biotechnol. 1999, 17, 994-999.
6. Adam, G. C.; Sorensen, E. J.; Cravatt, B. F. Mol. Cell. Proteomics 2002, 1, 828-835.
7. Speers, A. E.; Cravatt, B. F. ChemBioChem 2004, 5, 41-47.
8. Adam, G. C.; Burbaum, J.; Kozarich, J. W.; Patricelli, M. P.; Cravatt, B. F. J. Am. Chem. Soc. 2004, 126, 1363-1368.
9. Yount, R. G. Adv. Enzymol. 1975, 43, 1-56.
10. Cremo, C. R. Methods Enzymol. 2003, 360, 128-177.
11. Bagshaw, C. R. J. Cell. Sci. 2001, 114, 459-460.
12. Hanoulle, X.; Van, Damme, J.; Staes, A.; Martens, L.; Goethals, M.; Vandekerckhove, J.; Gevaert, K. J. Proteome Res. 2006, 5, 3438-3445.
13. Campbell, D. A.; Liyanage, M.; Szardenings, A. K.; Wu, M. PCT Int. Appl. WO 2004090154 A2 20041021, 2004.
14. Patricelli, M. P.; Szardenings, A. K.; Liyanage, M.; Nomanbhoy, T. K.; Wu, M.; Weissig, H.; Aban, A.; Chun, D.; Tanner, S.; Kozarich, J. W. Biochemistry 2007, 46, 350-358.
15. Redeuilh, G.; Secco, C.; Baulieu, E. E. J. Biol. Chem. 1985, 260, 3996-4002.
16. Skander, M.; Humbert, N.; Collot, J.; Gradinaru, J.; Klein, G.; Loosli, A.; Sauser, J.; Zocchi, A.; Gilardoni, F.; Ward, T. R. J. Am. Chem. Soc. 2004, 126, 14411-14418.
17. Kreimeyer, A.; Ughetto-Monfrin, J.; Namane, A.; Huynh-Dinh, T. Tetrahedron Lett. 1996, 37, 8739-8742.
18. Holmberg, A.; Blomstergren, A.; Nord, O.; Lukacs, M.; Lundeberg, J.; Uhlen, M. Electrophoresis 2005, 26, 501-510.
19. Zhang, Z. Q. Anal. Chem. 2004, 76, 6374-6383.
20. Zhang, Z. Q.; McElvain, J. S. Anal. Chem. 2000, 72, 2337-2350.
21. Lipmann, F. Bacteriol. Rev. 1953, 17, 1-16.
22. Kluger, R. Synlett 2000, 1708-1720.
23. Di Sabato, G.; Jencks, W. P. J. Am. Chem. Soc. 1961, 83, 4400-4405.
24. Roca, A. I.; Cox, M. M. Prog. Nucleic Acids Res. Mol. Biol. 1997, 56, 129-223.
25. Story, R. M.; Steitz, T. A. Nature 1992, 355, 374-376.
26. Xing, X.; Bell, C. E. J. Mol. Biol. 2004, 342, 1471-1485.
27. Xing, X.; Bell, C. E. Biochemistry 2004, 43, 16142-16152.
28. Leskovac, V.; Trivic, S.; Latkovska, M. Biochem. J. 1976, 155, 155-161.
29. Trivic, S.; Leskovac, V. J. Serb. Chem. Soc. 2000, 65, 207-227.
30. Rehrauer, W. M.; Kowalczykowski, S. C. J. Biol. Chem. 1993, 268, 1292-1297.
31. Cox, M. M. Trends Biochem. Sci. 1994, 19, 217-222.
32. Fraczkiewicz, R.; Braun, W. J. Comput. Chem. 1998, 19, 319-333.
33. Nobumoto, M.; Yamada, M.; Song, S. C.; Inouye, S.; Nakazawa, A. J. Biochem. 1998, 123, 128-135.
34. Hwang, T. L.; Liang, Y.; Chien, K. Y.; Yu, J. S. Proteomics 2006, 6, 2259-2272.
35. Okerberg, E. S.; Wu, J. Y.; Zhang, B. H.; Samii, B.; Blackford, K.; Winn, D. T.; Shreder, K. R.; Burbaum, J. J.; Patricelli, M. P. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 4996-5001.