-
1
-
-
80855128111
-
The quantitative proteome of a human cell line
-
Beck, M.; Schmidt, A.; Malmstroem, J.; Claassen, M.; Ori, A.; Szymborska, A.; Herzog, F.; Rinner, O.; Ellenberg, J.; Aebersold, R. The quantitative proteome of a human cell line Mol. Syst. Biol. 2011, 7, 549
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 549
-
-
Beck, M.1
Schmidt, A.2
Malmstroem, J.3
Claassen, M.4
Ori, A.5
Szymborska, A.6
Herzog, F.7
Rinner, O.8
Ellenberg, J.9
Aebersold, R.10
-
2
-
-
80855128254
-
Deep proteome and transcriptome mapping of a human cancer cell line
-
Nagaraj, N.; Wisniewski, J. R.; Geiger, T.; Cox, J.; Kircher, M.; Kelso, J.; Paabo, S.; Mann, M. Deep proteome and transcriptome mapping of a human cancer cell line Mol. Syst. Biol. 2011, 7, 548
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 548
-
-
Nagaraj, N.1
Wisniewski, J.R.2
Geiger, T.3
Cox, J.4
Kircher, M.5
Kelso, J.6
Paabo, S.7
Mann, M.8
-
3
-
-
79956322553
-
Global quantification of mammalian gene expression control
-
Schwanhausser, B.; Busse, D.; Li, N.; Dittmar, G.; Schuchhardt, J.; Wolf, J.; Chen, W.; Selbach, M. Global quantification of mammalian gene expression control Nature 2011, 473 (7347) 337-42
-
(2011)
Nature
, vol.473
, Issue.7347
, pp. 337-342
-
-
Schwanhausser, B.1
Busse, D.2
Li, N.3
Dittmar, G.4
Schuchhardt, J.5
Wolf, J.6
Chen, W.7
Selbach, M.8
-
4
-
-
39749146978
-
Quantitative proteomic analysis of protein complexes: Concurrent identification of interactors and their state of phosphorylation
-
Pflieger, D.; Junger, M. A.; Muller, M.; Rinner, O.; Lee, H.; Gehrig, P. M.; Gstaiger, M.; Aebersold, R. Quantitative proteomic analysis of protein complexes: concurrent identification of interactors and their state of phosphorylation Mol. Cell Proteomics 2008, 7 (2) 326-46
-
(2008)
Mol. Cell Proteomics
, vol.7
, Issue.2
, pp. 326-346
-
-
Pflieger, D.1
Junger, M.A.2
Muller, M.3
Rinner, O.4
Lee, H.5
Gehrig, P.M.6
Gstaiger, M.7
Aebersold, R.8
-
5
-
-
77957326091
-
Quantitative analysis of protein complex constituents and their phosphorylation states on a LTQ-Orbitrap instrument
-
Przybylski, C.; Junger, M. A.; Aubertin, J.; Radvanyi, F.; Aebersold, R.; Pflieger, D. Quantitative analysis of protein complex constituents and their phosphorylation states on a LTQ-Orbitrap instrument J. Proteome Res. 2010, 9 (10) 5118-32
-
(2010)
J. Proteome Res.
, vol.9
, Issue.10
, pp. 5118-5132
-
-
Przybylski, C.1
Junger, M.A.2
Aubertin, J.3
Radvanyi, F.4
Aebersold, R.5
Pflieger, D.6
-
6
-
-
77954572010
-
Quantitative phosphoproteomic analysis of T cell receptor signaling in diabetes prone and resistant mice
-
Iwai, L. K.; Benoist, C.; Mathis, D.; White, F. M. Quantitative phosphoproteomic analysis of T cell receptor signaling in diabetes prone and resistant mice J. Proteome Res. 2010, 9 (6) 3135-45
-
(2010)
J. Proteome Res.
, vol.9
, Issue.6
, pp. 3135-3145
-
-
Iwai, L.K.1
Benoist, C.2
Mathis, D.3
White, F.M.4
-
7
-
-
33750456519
-
Global, in vivo, and site-specific phosphorylation dynamics in signaling networks
-
Olsen, J. V.; Blagoev, B.; Gnad, F.; Macek, B.; Kumar, C.; Mortensen, P.; Mann, M. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks Cell 2006, 127 (3) 635-48
-
(2006)
Cell
, vol.127
, Issue.3
, pp. 635-648
-
-
Olsen, J.V.1
Blagoev, B.2
Gnad, F.3
Macek, B.4
Kumar, C.5
Mortensen, P.6
Mann, M.7
-
8
-
-
79953250081
-
Global phosphoproteomics reveals crosstalk between Bcr-Abl and negative feedback mechanisms controlling Src signaling
-
Rubbi, L.; Titz, B.; Brown, L.; Galvan, E.; Komisopoulou, E.; Chen, S. S.; Low, T.; Tahmasian, M.; Skaggs, B.; Muschen, M.; Pellegrini, M.; Graeber, T. G. Global phosphoproteomics reveals crosstalk between Bcr-Abl and negative feedback mechanisms controlling Src signaling Sci. Signaling 2011, 4 (166) ra18
-
(2011)
Sci. Signaling
, vol.4
, Issue.166
, pp. 18
-
-
Rubbi, L.1
Titz, B.2
Brown, L.3
Galvan, E.4
Komisopoulou, E.5
Chen, S.S.6
Low, T.7
Tahmasian, M.8
Skaggs, B.9
Muschen, M.10
Pellegrini, M.11
Graeber, T.G.12
-
9
-
-
34948875686
-
Quantitative chemical proteomics reveals mechanisms of action of clinical ABL kinase inhibitors
-
Bantscheff, M.; Eberhard, D.; Abraham, Y.; Bastuck, S.; Boesche, M.; Hobson, S.; Mathieson, T.; Perrin, J.; Raida, M.; Rau, C.; Reader, V.; Sweetman, G.; Bauer, A.; Bouwmeester, T.; Hopf, C.; Kruse, U.; Neubauer, G.; Ramsden, N.; Rick, J.; Kuster, B.; Drewes, G. Quantitative chemical proteomics reveals mechanisms of action of clinical ABL kinase inhibitors Nat. Biotechnol. 2007, 25 (9) 1035-44
-
(2007)
Nat. Biotechnol.
, vol.25
, Issue.9
, pp. 1035-1044
-
-
Bantscheff, M.1
Eberhard, D.2
Abraham, Y.3
Bastuck, S.4
Boesche, M.5
Hobson, S.6
Mathieson, T.7
Perrin, J.8
Raida, M.9
Rau, C.10
Reader, V.11
Sweetman, G.12
Bauer, A.13
Bouwmeester, T.14
Hopf, C.15
Kruse, U.16
Neubauer, G.17
Ramsden, N.18
Rick, J.19
Kuster, B.20
Drewes, G.21
more..
-
10
-
-
79952396960
-
Chemoproteomics profiling of HDAC inhibitors reveals selective targeting of HDAC complexes
-
Bantscheff, M.; Hopf, C.; Savitski, M. M.; Dittmann, A.; Grandi, P.; Michon, A. M.; Schlegl, J.; Abraham, Y.; Becher, I.; Bergamini, G.; Boesche, M.; Delling, M.; Dumpelfeld, B.; Eberhard, D.; Huthmacher, C.; Mathieson, T.; Poeckel, D.; Reader, V.; Strunk, K.; Sweetman, G.; Kruse, U.; Neubauer, G.; Ramsden, N. G.; Drewes, G. Chemoproteomics profiling of HDAC inhibitors reveals selective targeting of HDAC complexes Nat. Biotechnol. 2011, 29 (3) 255-65
-
(2011)
Nat. Biotechnol.
, vol.29
, Issue.3
, pp. 255-265
-
-
Bantscheff, M.1
Hopf, C.2
Savitski, M.M.3
Dittmann, A.4
Grandi, P.5
Michon, A.M.6
Schlegl, J.7
Abraham, Y.8
Becher, I.9
Bergamini, G.10
Boesche, M.11
Delling, M.12
Dumpelfeld, B.13
Eberhard, D.14
Huthmacher, C.15
Mathieson, T.16
Poeckel, D.17
Reader, V.18
Strunk, K.19
Sweetman, G.20
Kruse, U.21
Neubauer, G.22
Ramsden, N.G.23
Drewes, G.24
more..
-
11
-
-
70350412263
-
Revealing promiscuous drug-target interactions by chemical proteomics
-
Bantscheff, M.; Scholten, A.; Heck, A. J. Revealing promiscuous drug-target interactions by chemical proteomics Drug Discovery Today 2009, 14 (21-22) 1021-9
-
(2009)
Drug Discovery Today
, vol.14
, Issue.2122
, pp. 1021-1029
-
-
Bantscheff, M.1
Scholten, A.2
Heck, A.J.3
-
12
-
-
79959493188
-
In situ kinase profiling reveals functionally relevant properties of native kinases
-
Patricelli, M. P.; Nomanbhoy, T. K.; Wu, J.; Brown, H.; Zhou, D.; Zhang, J.; Jagannathan, S.; Aban, A.; Okerberg, E.; Herring, C.; Nordin, B.; Weissig, H.; Yang, Q.; Lee, J. D.; Gray, N. S.; Kozarich, J. W. In situ kinase profiling reveals functionally relevant properties of native kinases Chem. Biol. 2011, 18 (6) 699-710
-
(2011)
Chem. Biol.
, vol.18
, Issue.6
, pp. 699-710
-
-
Patricelli, M.P.1
Nomanbhoy, T.K.2
Wu, J.3
Brown, H.4
Zhou, D.5
Zhang, J.6
Jagannathan, S.7
Aban, A.8
Okerberg, E.9
Herring, C.10
Nordin, B.11
Weissig, H.12
Yang, Q.13
Lee, J.D.14
Gray, N.S.15
Kozarich, J.W.16
-
13
-
-
62549166213
-
Global target profile of the kinase inhibitor bosutinib in primary chronic myeloid leukemia cells
-
Remsing Rix, L. L.; Rix, U.; Colinge, J.; Hantschel, O.; Bennett, K. L.; Stranzl, T.; Muller, A.; Baumgartner, C.; Valent, P.; Augustin, M.; Till, J. H.; Superti-Furga, G. Global target profile of the kinase inhibitor bosutinib in primary chronic myeloid leukemia cells Leukemia 2009, 23 (3) 477-85
-
(2009)
Leukemia
, vol.23
, Issue.3
, pp. 477-485
-
-
Remsing Rix, L.L.1
Rix, U.2
Colinge, J.3
Hantschel, O.4
Bennett, K.L.5
Stranzl, T.6
Muller, A.7
Baumgartner, C.8
Valent, P.9
Augustin, M.10
Till, J.H.11
Superti-Furga, G.12
-
14
-
-
77958002294
-
Optimizing a proteomics platform for urine biomarker discovery
-
Afkarian, M.; Bhasin, M.; Dillon, S. T.; Guerrero, M. C.; Nelson, R. G.; Knowler, W. C.; Thadhani, R.; Libermann, T. A. Optimizing a proteomics platform for urine biomarker discovery Mol. Cell Proteomics 2010, 9 (10) 2195-204
-
(2010)
Mol. Cell Proteomics
, vol.9
, Issue.10
, pp. 2195-2204
-
-
Afkarian, M.1
Bhasin, M.2
Dillon, S.T.3
Guerrero, M.C.4
Nelson, R.G.5
Knowler, W.C.6
Thadhani, R.7
Libermann, T.A.8
-
15
-
-
77953121793
-
Towards proteome standards: The use of absolute quantitation in high-throughput biomarker discovery
-
Chao, T. C.; Hansmeier, N.; Halden, R. U. Towards proteome standards: the use of absolute quantitation in high-throughput biomarker discovery J. Proteomics 2010, 73 (8) 1641-6
-
(2010)
J. Proteomics
, vol.73
, Issue.8
, pp. 1641-1646
-
-
Chao, T.C.1
Hansmeier, N.2
Halden, R.U.3
-
16
-
-
59149084542
-
Targeted proteomic strategy for clinical biomarker discovery
-
Schiess, R.; Wollscheid, B.; Aebersold, R. Targeted proteomic strategy for clinical biomarker discovery Mol. Oncol. 2009, 3 (1) 33-44
-
(2009)
Mol. Oncol.
, vol.3
, Issue.1
, pp. 33-44
-
-
Schiess, R.1
Wollscheid, B.2
Aebersold, R.3
-
17
-
-
79959964306
-
Novel comprehensive approach for accessible biomarker identification and absolute quantification from precious human tissues
-
Turtoi, A.; Dumont, B.; Greffe, Y.; Blomme, A.; Mazzucchelli, G.; Delvenne, P.; Mutijima, E. N.; Lifrange, E.; De Pauw, E.; Castronovo, V. Novel comprehensive approach for accessible biomarker identification and absolute quantification from precious human tissues J. Proteome Res. 2011, 10 (7) 3160-82
-
(2011)
J. Proteome Res.
, vol.10
, Issue.7
, pp. 3160-3182
-
-
Turtoi, A.1
Dumont, B.2
Greffe, Y.3
Blomme, A.4
Mazzucchelli, G.5
Delvenne, P.6
Mutijima, E.N.7
Lifrange, E.8
De Pauw, E.9
Castronovo, V.10
-
18
-
-
77957595022
-
A proteomic approach for plasma biomarker discovery with 8-plex iTRAQ labeling and SCX-LC-MS/MS
-
Ye, H.; Sun, L.; Huang, X.; Zhang, P.; Zhao, X. A proteomic approach for plasma biomarker discovery with 8-plex iTRAQ labeling and SCX-LC-MS/MS Mol. Cell. Biochem. 2010, 343 (1-2) 91-9
-
(2010)
Mol. Cell. Biochem.
, vol.343
, Issue.12
, pp. 91-99
-
-
Ye, H.1
Sun, L.2
Huang, X.3
Zhang, P.4
Zhao, X.5
-
19
-
-
84865576726
-
Quantitative mass spectrometry in proteomics: Critical review update from 2007 to the present
-
Bantscheff, M.; Lemeer, S.; Savitski, M. M.; Kuster, B. Quantitative mass spectrometry in proteomics: critical review update from 2007 to the present Anal. Bioanal. Chem. 2012, 404 (4) 939-65
-
(2012)
Anal. Bioanal. Chem.
, vol.404
, Issue.4
, pp. 939-965
-
-
Bantscheff, M.1
Lemeer, S.2
Savitski, M.M.3
Kuster, B.4
-
20
-
-
34748916981
-
Quantitative mass spectrometry in proteomics: A critical review
-
Bantscheff, M.; Schirle, M.; Sweetman, G.; Rick, J.; Kuster, B. Quantitative mass spectrometry in proteomics: a critical review Anal. Bioanal. Chem. 2007, 389 (4) 1017-31
-
(2007)
Anal. Bioanal. Chem.
, vol.389
, Issue.4
, pp. 1017-1031
-
-
Bantscheff, M.1
Schirle, M.2
Sweetman, G.3
Rick, J.4
Kuster, B.5
-
21
-
-
0036583926
-
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
-
Ong, S. E.; Blagoev, B.; Kratchmarova, I.; Kristensen, D. B.; Steen, H.; Pandey, A.; Mann, M. Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics Mol. Cell. Proteomics 2002, 1 (5) 376-86
-
(2002)
Mol. Cell. Proteomics
, vol.1
, Issue.5
, pp. 376-386
-
-
Ong, S.E.1
Blagoev, B.2
Kratchmarova, I.3
Kristensen, D.B.4
Steen, H.5
Pandey, A.6
Mann, M.7
-
22
-
-
0035384687
-
Proteolytic 18O labeling for comparative proteomics: Model studies with two serotypes of adenovirus
-
Yao, X.; Freas, A.; Ramirez, J.; Demirev, P. A.; Fenselau, C. Proteolytic 18O labeling for comparative proteomics: model studies with two serotypes of adenovirus Anal. Chem. 2001, 73 (13) 2836-42
-
(2001)
Anal. Chem.
, vol.73
, Issue.13
, pp. 2836-2842
-
-
Yao, X.1
Freas, A.2
Ramirez, J.3
Demirev, P.A.4
Fenselau, C.5
-
23
-
-
13244260803
-
A novel strategy for quantitative proteomics using isotope-coded protein labels
-
Schmidt, A.; Kellermann, J.; Lottspeich, F. A novel strategy for quantitative proteomics using isotope-coded protein labels Proteomics 2005, 5 (1) 4-15
-
(2005)
Proteomics
, vol.5
, Issue.1
, pp. 4-15
-
-
Schmidt, A.1
Kellermann, J.2
Lottspeich, F.3
-
24
-
-
0032875697
-
Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
-
Gygi, S. P.; Rist, B.; Gerber, S. A.; Turecek, F.; Gelb, M. H.; Aebersold, R. Quantitative analysis of complex protein mixtures using isotope-coded affinity tags Nat. Biotechnol. 1999, 17 (10) 994-9
-
(1999)
Nat. Biotechnol.
, vol.17
, Issue.10
, pp. 994-999
-
-
Gygi, S.P.1
Rist, B.2
Gerber, S.A.3
Turecek, F.4
Gelb, M.H.5
Aebersold, R.6
-
25
-
-
55849093586
-
Triplex protein quantification based on stable isotope labeling by peptide dimethylation applied to cell and tissue lysates
-
Boersema, P. J.; Aye, T. T.; van Veen, T. A.; Heck, A. J.; Mohammed, S. Triplex protein quantification based on stable isotope labeling by peptide dimethylation applied to cell and tissue lysates Proteomics 2008, 8 (22) 4624-32
-
(2008)
Proteomics
, vol.8
, Issue.22
, pp. 4624-4632
-
-
Boersema, P.J.1
Aye, T.T.2
Van Veen, T.A.3
Heck, A.J.4
Mohammed, S.5
-
26
-
-
0348014635
-
Stable-isotope dimethyl labeling for quantitative proteomics
-
Hsu, J. L.; Huang, S. Y.; Chow, N. H.; Chen, S. H. Stable-isotope dimethyl labeling for quantitative proteomics Anal. Chem. 2003, 75 (24) 6843-52
-
(2003)
Anal. Chem.
, vol.75
, Issue.24
, pp. 6843-6852
-
-
Hsu, J.L.1
Huang, S.Y.2
Chow, N.H.3
Chen, S.H.4
-
27
-
-
12444345515
-
Tandem mass tags: A novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS
-
Thompson, A.; Schafer, J.; Kuhn, K.; Kienle, S.; Schwarz, J.; Schmidt, G.; Neumann, T.; Johnstone, R.; Mohammed, A. K.; Hamon, C. Tandem mass tags: a novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS Anal. Chem. 2003, 75 (8) 1895-904
-
(2003)
Anal. Chem.
, vol.75
, Issue.8
, pp. 1895-1904
-
-
Thompson, A.1
Schafer, J.2
Kuhn, K.3
Kienle, S.4
Schwarz, J.5
Schmidt, G.6
Neumann, T.7
Johnstone, R.8
Mohammed, A.K.9
Hamon, C.10
-
28
-
-
19944432197
-
Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
-
Ross, P. L.; Huang, Y. N.; Marchese, J. N.; Williamson, B.; Parker, K.; Hattan, S.; Khainovski, N.; Pillai, S.; Dey, S.; Daniels, S.; Purkayastha, S.; Juhasz, P.; Martin, S.; Bartlet-Jones, M.; He, F.; Jacobson, A.; Pappin, D. J. Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents Mol. Cell. Proteomics 2004, 3 (12) 1154-69
-
(2004)
Mol. Cell. Proteomics
, vol.3
, Issue.12
, pp. 1154-1169
-
-
Ross, P.L.1
Huang, Y.N.2
Marchese, J.N.3
Williamson, B.4
Parker, K.5
Hattan, S.6
Khainovski, N.7
Pillai, S.8
Dey, S.9
Daniels, S.10
Purkayastha, S.11
Juhasz, P.12
Martin, S.13
Bartlet-Jones, M.14
He, F.15
Jacobson, A.16
Pappin, D.J.17
-
29
-
-
42349105213
-
Relative quantification of proteins in human cerebrospinal fluids by MS/MS using 6-plex isobaric tags
-
Dayon, L.; Hainard, A.; Licker, V.; Turck, N.; Kuhn, K.; Hochstrasser, D. F.; Burkhard, P. R.; Sanchez, J. C. Relative quantification of proteins in human cerebrospinal fluids by MS/MS using 6-plex isobaric tags Anal. Chem. 2008, 80 (8) 2921-31
-
(2008)
Anal. Chem.
, vol.80
, Issue.8
, pp. 2921-2931
-
-
Dayon, L.1
Hainard, A.2
Licker, V.3
Turck, N.4
Kuhn, K.5
Hochstrasser, D.F.6
Burkhard, P.R.7
Sanchez, J.C.8
-
30
-
-
84865454296
-
High-resolution enabled TMT 8-plexing
-
Werner, T.; Becher, I.; Sweetman, G.; Doce, C.; Savitski, M. M.; Bantscheff, M. High-resolution enabled TMT 8-plexing Anal. Chem. 2012, 84 (16) 7188-94
-
(2012)
Anal. Chem.
, vol.84
, Issue.16
, pp. 7188-7194
-
-
Werner, T.1
Becher, I.2
Sweetman, G.3
Doce, C.4
Savitski, M.M.5
Bantscheff, M.6
-
31
-
-
36348930014
-
Improving the Fundamentals of Msn on 2D Ion Traps: New Ion Activation and Isolation Techniques
-
San Antonio, Texas
-
Schwartz, J. C.; Syka, J. P.; Quarmby, S. T. Improving the Fundamentals of Msn on 2D Ion Traps: New Ion Activation and Isolation Techniques. In 53rd ASMS Conference on Mass Spectrometry, San Antonio, Texas, 2005.
-
(2005)
53rd ASMS Conference on Mass Spectrometry
-
-
Schwartz, J.C.1
Syka, J.P.2
Quarmby, S.T.3
-
32
-
-
55249089723
-
Electron transfer dissociation of iTRAQ labeled peptide ions
-
Han, H.; Pappin, D. J.; Ross, P. L.; McLuckey, S. A. Electron transfer dissociation of iTRAQ labeled peptide ions J. Proteome Res. 2008, 7 (9) 3643-8
-
(2008)
J. Proteome Res.
, vol.7
, Issue.9
, pp. 3643-3648
-
-
Han, H.1
Pappin, D.J.2
Ross, P.L.3
McLuckey, S.A.4
-
33
-
-
63649139204
-
Peptide quantification using 8-plex isobaric tags and electron transfer dissociation tandem mass spectrometry
-
Phanstiel, D.; Unwin, R.; McAlister, G. C.; Coon, J. J. Peptide quantification using 8-plex isobaric tags and electron transfer dissociation tandem mass spectrometry Anal. Chem. 2009, 81 (4) 1693-8
-
(2009)
Anal. Chem.
, vol.81
, Issue.4
, pp. 1693-1698
-
-
Phanstiel, D.1
Unwin, R.2
McAlister, G.C.3
Coon, J.J.4
-
34
-
-
35648942133
-
8-plex quantitation of changes in cerebrospinal fluid protein expression in subjects undergoing intravenous immunoglobulin treatment for Alzheimer's disease
-
Choe, L.; D'Ascenzo, M.; Relkin, N. R.; Pappin, D.; Ross, P.; Williamson, B.; Guertin, S.; Pribil, P.; Lee, K. H. 8-plex quantitation of changes in cerebrospinal fluid protein expression in subjects undergoing intravenous immunoglobulin treatment for Alzheimer's disease Proteomics 2007, 7 (20) 3651-60
-
(2007)
Proteomics
, vol.7
, Issue.20
, pp. 3651-3660
-
-
Choe, L.1
D'Ascenzo, M.2
Relkin, N.R.3
Pappin, D.4
Ross, P.5
Williamson, B.6
Guertin, S.7
Pribil, P.8
Lee, K.H.9
-
35
-
-
84865718193
-
Increasing the multiplexing capacity of TMTs using reporter ion isotopologues with isobaric masses
-
McAlister, G. C.; Huttlin, E. L.; Haas, W.; Ting, L.; Jedrychowski, M. P.; Rogers, J. C.; Kuhn, K.; Pike, I.; Grothe, R. A.; Blethrow, J. D.; Gygi, S. P. Increasing the multiplexing capacity of TMTs using reporter ion isotopologues with isobaric masses Anal. Chem. 2012, 84 (17) 7469-78
-
(2012)
Anal. Chem.
, vol.84
, Issue.17
, pp. 7469-7478
-
-
McAlister, G.C.1
Huttlin, E.L.2
Haas, W.3
Ting, L.4
Jedrychowski, M.P.5
Rogers, J.C.6
Kuhn, K.7
Pike, I.8
Grothe, R.A.9
Blethrow, J.D.10
Gygi, S.P.11
-
36
-
-
52649098504
-
Robust and sensitive iTRAQ quantification on an LTQ Orbitrap mass spectrometer
-
Bantscheff, M.; Boesche, M.; Eberhard, D.; Matthieson, T.; Sweetman, G.; Kuster, B. Robust and sensitive iTRAQ quantification on an LTQ Orbitrap mass spectrometer Mol. Cell. Proteomics 2008, 7 (9) 1702-13
-
(2008)
Mol. Cell. Proteomics
, vol.7
, Issue.9
, pp. 1702-1713
-
-
Bantscheff, M.1
Boesche, M.2
Eberhard, D.3
Matthieson, T.4
Sweetman, G.5
Kuster, B.6
-
37
-
-
70449412362
-
ITRAQ underestimation in simple and complex mixtures: "the good, the bad and the ugly"
-
Ow, S. Y.; Salim, M.; Noirel, J.; Evans, C.; Rehman, I.; Wright, P. C. iTRAQ underestimation in simple and complex mixtures: "the good, the bad and the ugly" J. Proteome Res. 2009, 8 (11) 5347-55
-
(2009)
J. Proteome Res.
, vol.8
, Issue.11
, pp. 5347-5355
-
-
Ow, S.Y.1
Salim, M.2
Noirel, J.3
Evans, C.4
Rehman, I.5
Wright, P.C.6
-
38
-
-
79956270174
-
Minimising iTRAQ ratio compression through understanding LC-MS elution dependence and high-resolution HILIC fractionation
-
Ow, S. Y.; Salim, M.; Noirel, J.; Evans, C.; Wright, P. C. Minimising iTRAQ ratio compression through understanding LC-MS elution dependence and high-resolution HILIC fractionation Proteomics 2011, 11 (11) 2341-6
-
(2011)
Proteomics
, vol.11
, Issue.11
, pp. 2341-2346
-
-
Ow, S.Y.1
Salim, M.2
Noirel, J.3
Evans, C.4
Wright, P.C.5
-
39
-
-
80155205237
-
Gas-phase purification enables accurate, multiplexed proteome quantification with isobaric tagging
-
Wenger, C. D.; Lee, M. V.; Hebert, A. S.; McAlister, G. C.; Phanstiel, D. H.; Westphall, M. S.; Coon, J. J. Gas-phase purification enables accurate, multiplexed proteome quantification with isobaric tagging Nat. Methods 2011, 8 (11) 933-5
-
(2011)
Nat. Methods
, vol.8
, Issue.11
, pp. 933-935
-
-
Wenger, C.D.1
Lee, M.V.2
Hebert, A.S.3
McAlister, G.C.4
Phanstiel, D.H.5
Westphall, M.S.6
Coon, J.J.7
-
40
-
-
82555185589
-
Delayed fragmentation and optimized isolation width settings for improvement of protein identification and accuracy of isobaric mass tag quantification on Orbitrap-type mass spectrometers
-
Savitski, M. M.; Sweetman, G.; Askenazi, M.; Marto, J. A.; Lang, M.; Zinn, N.; Bantscheff, M. Delayed fragmentation and optimized isolation width settings for improvement of protein identification and accuracy of isobaric mass tag quantification on Orbitrap-type mass spectrometers Anal. Chem. 2011, 83 (23) 8959-67
-
(2011)
Anal. Chem.
, vol.83
, Issue.23
, pp. 8959-8967
-
-
Savitski, M.M.1
Sweetman, G.2
Askenazi, M.3
Marto, J.A.4
Lang, M.5
Zinn, N.6
Bantscheff, M.7
-
41
-
-
84868542018
-
Accurate Multiplexed Proteomics at the MS2 Level Using the Complement Reporter Ion Cluster
-
Wuhr, M.; Haas, W.; McAlister, G. C.; Peshkin, L.; Rad, R.; Kirschner, M. W.; Gygi, S. P. Accurate Multiplexed Proteomics at the MS2 Level Using the Complement Reporter Ion Cluster Anal. Chem. 2012, 84 (21) 9214-21
-
(2012)
Anal. Chem.
, vol.84
, Issue.21
, pp. 9214-9221
-
-
Wuhr, M.1
Haas, W.2
McAlister, G.C.3
Peshkin, L.4
Rad, R.5
Kirschner, M.W.6
Gygi, S.P.7
-
42
-
-
80155124832
-
MS3 eliminates ratio distortion in isobaric multiplexed quantitative proteomics
-
Ting, L.; Rad, R.; Gygi, S. P.; Haas, W. MS3 eliminates ratio distortion in isobaric multiplexed quantitative proteomics Nat. Methods 2011, 8 (11) 937-40
-
(2011)
Nat. Methods
, vol.8
, Issue.11
, pp. 937-940
-
-
Ting, L.1
Rad, R.2
Gygi, S.P.3
Haas, W.4
-
43
-
-
84881179390
-
Isolating multiple MS2 fragments using waveforms with multiple frequency notches improves MS3 sensitivity ∼8 fold over standard MS3-based TMT methods
-
Denver
-
McAlister, G. C.; Jedrychowski, M.; Yu, Y.; Ting, L.; Huttlin, E. L.; Rad, R.; Haas, W.; Gygi, S. P. Isolating multiple MS2 fragments using waveforms with multiple frequency notches improves MS3 sensitivity ∼8 fold over standard MS3-based TMT methods, 60th Annual Conference, American Society for Mass Spectrometry, Denver, 2012.
-
(2012)
60th Annual Conference, American Society for Mass Spectrometry
-
-
McAlister, G.C.1
Jedrychowski, M.2
Yu, Y.3
Ting, L.4
Huttlin, E.L.5
Rad, R.6
Haas, W.7
Gygi, S.P.8
-
44
-
-
0037178097
-
Gas-phase concentration, purification, and identification of whole proteins from complex mixtures
-
Reid, G. E.; Shang, H.; Hogan, J. M.; Lee, G. U.; McLuckey, S. A. Gas-phase concentration, purification, and identification of whole proteins from complex mixtures J. Am. Chem. Soc. 2002, 124 (25) 7353-62
-
(2002)
J. Am. Chem. Soc.
, vol.124
, Issue.25
, pp. 7353-7362
-
-
Reid, G.E.1
Shang, H.2
Hogan, J.M.3
Lee, G.U.4
McLuckey, S.A.5
-
45
-
-
77956836941
-
Targeted data acquisition for improved reproducibility and robustness of proteomic mass spectrometry assays
-
Savitski, M. M.; Fischer, F.; Mathieson, T.; Sweetman, G.; Lang, M.; Bantscheff, M. Targeted data acquisition for improved reproducibility and robustness of proteomic mass spectrometry assays J. Am. Soc. Mass Spectrom. 2010, 21 (10) 1668-79
-
(2010)
J. Am. Soc. Mass Spectrom.
, vol.21
, Issue.10
, pp. 1668-1679
-
-
Savitski, M.M.1
Fischer, F.2
Mathieson, T.3
Sweetman, G.4
Lang, M.5
Bantscheff, M.6
-
46
-
-
78651340521
-
Chemoproteomics-based kinome profiling and target deconvolution of clinical multi-kinase inhibitors in primary chronic lymphocytic leukemia cells
-
Kruse, U.; Pallasch, C. P.; Bantscheff, M.; Eberhard, D.; Frenzel, L.; Ghidelli, S.; Maier, S. K.; Werner, T.; Wendtner, C. M.; Drewes, G. Chemoproteomics-based kinome profiling and target deconvolution of clinical multi-kinase inhibitors in primary chronic lymphocytic leukemia cells Leukemia 2011, 25 (1) 89-100
-
(2011)
Leukemia
, vol.25
, Issue.1
, pp. 89-100
-
-
Kruse, U.1
Pallasch, C.P.2
Bantscheff, M.3
Eberhard, D.4
Frenzel, L.5
Ghidelli, S.6
Maier, S.K.7
Werner, T.8
Wendtner, C.M.9
Drewes, G.10
-
47
-
-
70349974261
-
High Precision Quantitative Proteomics Using iTRAQ on an LTQ Orbitrap: A New Mass Spectrometric Method Combining the Benefits of All
-
Kocher, T.; Pichler, P.; Schutzbier, M.; Stingl, C.; Kaul, A.; Teucher, N.; Hasenfuss, G.; Penninger, J. M.; Mechtler, K. High Precision Quantitative Proteomics Using iTRAQ on an LTQ Orbitrap: A New Mass Spectrometric Method Combining the Benefits of All J. Proteome Res. 2009, 8 (10) 4743-52
-
(2009)
J. Proteome Res.
, vol.8
, Issue.10
, pp. 4743-4752
-
-
Kocher, T.1
Pichler, P.2
Schutzbier, M.3
Stingl, C.4
Kaul, A.5
Teucher, N.6
Hasenfuss, G.7
Penninger, J.M.8
Mechtler, K.9
-
48
-
-
71749110791
-
Multiplierz: An extensible API based desktop environment for proteomics data analysis
-
Parikh, J. R.; Askenazi, M.; Ficarro, S. B.; Cashorali, T.; Webber, J. T.; Blank, N. C.; Zhang, Y.; Marto, J. A. Multiplierz: an extensible API based desktop environment for proteomics data analysis BMC Bioinformatics 2009, 10, 364
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 364
-
-
Parikh, J.R.1
Askenazi, M.2
Ficarro, S.B.3
Cashorali, T.4
Webber, J.T.5
Blank, N.C.6
Zhang, Y.7
Marto, J.A.8
-
49
-
-
0033434080
-
Probability-based protein identification by searching sequence databases using mass spectrometry data
-
Perkins, D. N.; Pappin, D. J.; Creasy, D. M.; Cottrell, J. S. Probability-based protein identification by searching sequence databases using mass spectrometry data Electrophoresis 1999, 20 (18) 3551-67
-
(1999)
Electrophoresis
, vol.20
, Issue.18
, pp. 3551-3567
-
-
Perkins, D.N.1
Pappin, D.J.2
Creasy, D.M.3
Cottrell, J.S.4
-
50
-
-
33847630405
-
Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
-
Elias, J. E.; Gygi, S. P. Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry Nat. Methods 2007, 4 (3) 207-14
-
(2007)
Nat. Methods
, vol.4
, Issue.3
, pp. 207-214
-
-
Elias, J.E.1
Gygi, S.P.2
-
51
-
-
78649715058
-
Evaluation of data analysis strategies for improved mass spectrometry-based phosphoproteomics
-
Savitski, M. M.; Scholten, A.; Sweetman, G.; Mathieson, T.; Bantscheff, M. Evaluation of data analysis strategies for improved mass spectrometry-based phosphoproteomics Anal. Chem. 2010, 82 (23) 9843-9
-
(2010)
Anal. Chem.
, vol.82
, Issue.23
, pp. 9843-9849
-
-
Savitski, M.M.1
Scholten, A.2
Sweetman, G.3
Mathieson, T.4
Bantscheff, M.5
-
52
-
-
84862333720
-
ITRAQ labeling is superior to mTRAQ for quantitative global proteomics and phosphoproteomics
-
Mertins, P.; Udeshi, N. D.; Clauser, K. R.; Mani, D. R.; Patel, J.; Ong, S. E.; Jaffe, J. D.; Carr, S. A. iTRAQ labeling is superior to mTRAQ for quantitative global proteomics and phosphoproteomics Mol. Cell. Proteomics 2012, 11 (6) M111.014423
-
(2012)
Mol. Cell. Proteomics
, vol.11
, Issue.6
, pp. 111014423
-
-
Mertins, P.1
Udeshi, N.D.2
Clauser, K.R.3
Mani, D.R.4
Patel, J.5
Ong, S.E.6
Jaffe, J.D.7
Carr, S.A.8
-
53
-
-
31644446949
-
Absolute quantification of proteins by LCMSE: A virtue of parallel MS acquisition
-
Silva, J. C.; Gorenstein, M. V.; Li, G. Z.; Vissers, J. P.; Geromanos, S. J. Absolute quantification of proteins by LCMSE: a virtue of parallel MS acquisition Mol. Cell. Proteomics 2006, 5 (1) 144-56
-
(2006)
Mol. Cell. Proteomics
, vol.5
, Issue.1
, pp. 144-156
-
-
Silva, J.C.1
Gorenstein, M.V.2
Li, G.Z.3
Vissers, J.P.4
Geromanos, S.J.5
-
54
-
-
84875194085
-
Affinity profiling of the cellular kinome for the nucleotide cofactors ATP, ADP, and GTP
-
Becher, I.; Savitski, M. M.; Savitski, M. F.; Hopf, C.; Bantscheff, M.; Drewes, G. Affinity profiling of the cellular kinome for the nucleotide cofactors ATP, ADP, and GTP ACS Chem. Biol. 2013, 8 (3) 599-607
-
(2013)
ACS Chem. Biol.
, vol.8
, Issue.3
, pp. 599-607
-
-
Becher, I.1
Savitski, M.M.2
Savitski, M.F.3
Hopf, C.4
Bantscheff, M.5
Drewes, G.6
-
55
-
-
84883529394
-
Benchmarking stable isotope labeling based quantitative proteomics
-
10.1016/j.jprot.2012.10.009
-
Altelaar, A. F.; Frese, C. K.; Preisinger, C.; Hennrich, M. L.; Schram, A. W.; Timmers, H. T.; Heck, A. J.; Mohammed, S. Benchmarking stable isotope labeling based quantitative proteomics J. Proteomics 2012, 10.1016/j.jprot.2012. 10.009
-
(2012)
J. Proteomics
-
-
Altelaar, A.F.1
Frese, C.K.2
Preisinger, C.3
Hennrich, M.L.4
Schram, A.W.5
Timmers, H.T.6
Heck, A.J.7
Mohammed, S.8
-
56
-
-
84857911138
-
Chemoproteomic approaches to drug target identification and drug profiling
-
Bantscheff, M.; Drewes, G. Chemoproteomic approaches to drug target identification and drug profiling Bioorg. Med. Chem. 2012, 20 (6) 1973-8
-
(2012)
Bioorg. Med. Chem.
, vol.20
, Issue.6
, pp. 1973-1978
-
-
Bantscheff, M.1
Drewes, G.2
-
57
-
-
82355163392
-
Determination of kinase inhibitor potencies in cell extracts by competition binding assays and isobaric mass tags
-
Hopf, C.; Eberhard, D.; Boesche, M.; Bastuck, S.; Dumpelfeld, B.; Bantscheff, M. Determination of kinase inhibitor potencies in cell extracts by competition binding assays and isobaric mass tags Methods Mol. Biol. 2012, 803, 141-55
-
(2012)
Methods Mol. Biol.
, vol.803
, pp. 141-155
-
-
Hopf, C.1
Eberhard, D.2
Boesche, M.3
Bastuck, S.4
Dumpelfeld, B.5
Bantscheff, M.6
-
58
-
-
84866388559
-
Mass spectrometry approaches to monitor protein-drug interactions
-
Zinn, N.; Hopf, C.; Drewes, G.; Bantscheff, M. Mass spectrometry approaches to monitor protein-drug interactions Methods 2012, 57 (4) 430-40
-
(2012)
Methods
, vol.57
, Issue.4
, pp. 430-440
-
-
Zinn, N.1
Hopf, C.2
Drewes, G.3
Bantscheff, M.4
|