Peptide quantification using 8-plex isobaric tags and electron transfer dissociation tandem mass spectrometry

Analytical Chemistry

Volumn 81, Issue 4, 2009, Pages 1693-1698

  Phanstiel, Doug ^a   Unwin, Richard ^b   McAlister, Graeme C ^a   Coon, Joshua J ^a  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

^b UNIVERSITY OF MANCHESTER   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

COLLISION-ACTIVATED DISSOCIATIONS; ELECTRON-TRANSFER DISSOCIATIONS; FRAGMENTATION PATTERNS; GOOD CORRELATIONS; PEPTIDE BACKBONES; PEPTIDE QUANTIFICATIONS; RELATIVE ABUNDANCES; RELATIVE INTENSITIES; RELATIVE QUANTIFICATIONS; RESONANT EXCITATIONS; SOLUTION PHASE; TANDEM MASS SPECTROMETRIES; THREE CHANNELS;

DISSOCIATION; ELECTRON TRANSITIONS; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; IONS; MASS SPECTROMETRY; PEPTIDES;

AMINES;

ARTICLE; COLLISIONALLY ACTIVATED DISSOCIATION; ELECTRON TRANSPORT; PROTEIN CLEAVAGE; REVERSED PHASE LIQUID CHROMATOGRAPHY; SENSITIVITY ANALYSIS; TANDEM MASS SPECTROMETRY; AMINO ACID SEQUENCE; CHEMISTRY; METHODOLOGY; STAINING;

PEPTIDE;

AMINO ACID SEQUENCE; ELECTRON TRANSPORT; PEPTIDES; STAINING AND LABELING; TANDEM MASS SPECTROMETRY;

EID: 63649139204     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac8019202     Document Type: Article

References (29)

1. Aebersold, R.; Mann, M. Nature 2003, 422, 198-207.
2. Bantscheff, M.; Schirle, M.; Sweetman, G.; Rick, J.; Kuster, B. Anal. Bioanal. Chem. 2007, 389, 1017-1031.
3. Conrads, T. P.; Issaq, H. J.; Veenstra, T. D. Biochem. Biophys. Res. Commun. 2002, 290, 885-890.
4. Heck, A. J. R.; Krijgsveld, J. Expert Rev. Proteomics 2004, 1, 317-326.
5. Julka, S.; Regnier, F. J. Proteome Res. 2004, 3, 350-363.
6. Leitner, A.; Lindner, W. Proteomics 2006, 6, 5418-5434.
7. Ong, S. E.; Foster, L. J.; Mann, M. Methods 2003, 29, 124-130.
8. Ong, S. E.; Mann, M. Nat Chem. Biol. 2005, 1, 252-262.
9. Righetti, P. G.; Campostrini, N.; Pascali, J.; Hamdan, M.; Astner, H. Eur. J. Mass Spectrom. 2004, 10, 335-348.
10. Thompson, A.; Schafer, J.; Kuhn, K.; Kienle, S.; Schwarz, J.; Schmidt, G.; Neumann, T.; Hamon, C. Anal. Chem. 2003, 75, 1895-1904.
11. Ross, P. L.; Huang, Y. L. N.; Marchese, J. N.; Williamson, B.; Parker, K.; Hattan, S.; Khainovski, N.; Pillai, S.; Dey, S.; Daniels, S.; Purkayastha, S.; Juhasz, P.; Martin, S.; Bartlet-Jones, M.; He, F.; Jacobson, A.; Pappin, D. J. Mol. Cell. Proteomics 2004, 3, 1154-1169.
12. Choe, L.; D'Ascenzo, M.; Relkin, N. R.; Pappin, D.; Ross, P.; Williamson, B.; Guertin, S.; Pribil, P.; Lee, K. H. Proteomics 2007, 7, 3651-3660.
13. Zhang, Y.; Wolf-Yadlin, A.; Ross, P. L.; Pappin, D. J.; Rush, J.; Lauffenburger, D. A.; White, F. M. Mol. Cell. Proteomics 2005, 4, 1240-1250.
14. Chi, A.; Huttenhower, C.; Geer, L. Y.; Coon, J. J.; Syka, J. E. P.; Bai, D. L.; Shabanowitz, J.; Burke, D. J.; Troyanskaya, O. G.; Hunt, D. F. Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 2193-2198.
15. Good, D. M.; Wirtala, M.; McAlister, G. C.; Coon, J. J. Mol. Cell. Proteomics 2007, 6, 1942-1951.
16. Syka, J. E. P.; Coon, J. J.; Schroeder, M. J.; Shabanowitz, J.; Hunt, D. F. Proc. Natl Acad. Sci. U.S.A. 2004, 101, 9528-9533.
17. Molina, H.; Matthiesen, R.; Kandasamy, K.; Pandey, A. Anal. Chem. 2008, 80, 4825-4835.
18. Molina, H.; Horn, D. M.; Tang, N.; Mathivanan, S.; Pandey, A. Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 2199-2204.
19. Phanstiel, D.; Zhang, Y.; Marto, J. A.; Coon, J. J. J. Am. Soc. Mass Spectrom. 2008, 19, 1255-1262.
20. Han, H. L.; Pappin, D. J.; Ross, P. L.; McLuckey, S. A. J. Proteome Res. 2008, 7, 3643-3648.
21. McAlister, G. C.; Berggren, W. T.; Griep-Raming, J.; Horning, S.; Makarov, A.; Phanstiel, D.; Stafford, G.; Swaney, D. L.; Syka, J. E.; Zabrouskov, V.; Coon, J. J. J. Proteome Res. 2008, 7, 3127-3136.
22. McAlister, G. C.; Phanstiel, D.; Good, D. M.; Berggren, W. T.; Coon, J. J. Anal. Chem. 2007, 79, 3525-3534.
23. Quaglia, M.; Pritchard, C.; Hall, Z.; O'Connor, G. Anal. Biochem. 2008, 379, 164-169.
24. Pierce, A.; Unwin, R. D.; Evans, C. A.; Griffiths, S.; Carney, L.; Zhang, L.; Jaworska, E.; Lee, C. F.; Blinco, D.; Okoniewski, M. J.; Miller, C. J.; Bitton, D. A.; Spooncer, E.; Whetton, A. D. Mol. Cell. Proteomics 2008, 7, 853-863.
25. Wu, S. L.; Huehmer, A. F. R.; Hao, Z. Q.; Karger, B. L. J. Proteome Res. 2007, 6, 4230-4244.
26. Mikesh, L. M.; Ueberheide, B.; Chi, A.; Coon, J. J.; Syka, J. E. P.; Shabanowitz, J.; Hunt, D. F. Biochim. Biophys. Acta, Proteins Proteomics 2006, 1764, 1811-1822.
27. Khidekel, N.; Ficarro, S. B.; Clark, P. M.; Bryan, M. C.; Swaney, D. L.; Rexach, J. E.; Sun, Y. E.; Coon, J. J.; Peters, E. C.; Hsieh-Wilson, L. C. Nat Chem. Biol. 2007, 3, 339-348.
28. Swaney, D. L.; McAlister, G. C.; Wirtala, M.; Schwartz, J. C.; Syka, J. E. P.; Coon, J. J. Anal. Chem. 2007, 79, 477-485.
29. Phanstiel, D.; Brumbaugh, J.; Berggren, W. T.; Conard, K.; Feng, X.; Levenstein, M. E.; McAlister, G. C.; Thomson, J. A.; Coon, J. J. Proceedings of the National Academy of Sciences of the United States of America 2008, 105, 4093-4098.