-
1
-
-
0035963414
-
Protein dispensability and rate of evolution
-
10.1038/35082561 11429604
-
Protein dispensability and rate of evolution. Hirsh AE, Fraser HB, Nature 2001 411 6841 1046 1049 10.1038/35082561 11429604
-
(2001)
Nature
, vol.411
, Issue.6841
, pp. 1046-1049
-
-
Hirsh, A.E.1
Fraser, H.B.2
-
2
-
-
0037472928
-
Genomic function: Rate of evolution and gene dispensability
-
discussion 497-498 12556881
-
Genomic function: rate of evolution and gene dispensability. Pal C, Papp B, Hurst LD, Nature 2003 421 6922 496 497 discussion 497-498 12556881
-
(2003)
Nature
, vol.421
, Issue.6922
, pp. 496-497
-
-
Pal, C.1
Papp, B.2
Hurst, L.D.3
-
3
-
-
0037177560
-
Evolutionary rate in the protein interaction network
-
DOI 10.1126/science.1068696
-
Evolutionary rate in the protein interaction network. Fraser HB, Hirsh AE, Steinmetz LM, Scharfe C, Feldman MW, Science 2002 296 5568 750 752 10.1126/science.1068696 11976460 (Pubitemid 34442006)
-
(2002)
Science
, vol.296
, Issue.5568
, pp. 750-752
-
-
Fraser, H.B.1
Hirsh, A.E.2
Steinmetz, L.M.3
Scharfe, C.4
Feldman, M.W.5
-
4
-
-
0036078078
-
Essential genes are more evolutionarily conserved than are nonessential genes in bacteria
-
DOI 10.1101/gr.87702. Article published online before print in May 2002
-
Essential genes are more evolutionarily conserved than are nonessential genes in bacteria. Jordan IK, Rogozin IB, Wolf YI, Koonin EV, Genome Res 2002 12 6 962 968 12045149 (Pubitemid 34662289)
-
(2002)
Genome Research
, vol.12
, Issue.6
, pp. 962-968
-
-
King Jordan, I.1
Rogozin, I.B.2
Wolf, Y.I.3
Koonin, E.V.4
-
5
-
-
0038708556
-
Rate of protein evolution versus fitness effect of gene deletion
-
DOI 10.1093/molbev/msg078
-
Rate of protein evolution versus fitness effect of gene deletion. Yang J, Gu Z, Li WH, Mol Biol Evol 2003 20 5 772 774 10.1093/molbev/msg078 12679525 (Pubitemid 36539013)
-
(2003)
Molecular Biology and Evolution
, vol.20
, Issue.5
, pp. 772-774
-
-
Yang, J.1
Gu, Z.2
Li, W.-H.3
-
6
-
-
16344381521
-
Comparative genomics of centrality and essentiality in three eukaryotic protein-interaction networks
-
DOI 10.1093/molbev/msi072
-
Comparative genomics of centrality and essentiality in three eukaryotic protein-interaction networks. Hahn MW, Kern AD, Mol Biol Evol 2005 22 4 803 806 10.1093/molbev/msi072 15616139 (Pubitemid 40471393)
-
(2005)
Molecular Biology and Evolution
, vol.22
, Issue.4
, pp. 803-806
-
-
Hahn, M.W.1
Kern, A.D.2
-
7
-
-
47549097539
-
Mistranslation-Induced Protein Misfolding as a Dominant Constraint on Coding-Sequence Evolution
-
DOI 10.1016/j.cell.2008.05.042, PII S0092867408007058
-
Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution. Drummond DA, Wilke CO, Cell 2008 134 2 341 352 10.1016/j.cell.2008.05.042 18662548 (Pubitemid 352010328)
-
(2008)
Cell
, vol.134
, Issue.2
, pp. 341-352
-
-
Drummond, D.A.1
Wilke, C.O.2
-
8
-
-
77958489829
-
Impact of extracellularity on the evolutionary rate of mammalian proteins
-
10.1093/gbe/evp058 20333223
-
Impact of extracellularity on the evolutionary rate of mammalian proteins. Liao BY, Weng MP, Zhang J, Genome Biol Evol 2010 2 39 43 10.1093/gbe/evp058 20333223
-
(2010)
Genome Biol Evol
, vol.2
, pp. 39-43
-
-
Liao, B.Y.1
Weng, M.P.2
Zhang, J.3
-
9
-
-
84881251254
-
Flagellated algae protein evolution suggests the prevalence of lineage-specific rules governing evolutionary rates of eukaryotic proteins
-
10.1093/gbe/evt055 23563973
-
Flagellated algae protein evolution suggests the prevalence of lineage-specific rules governing evolutionary rates of eukaryotic proteins. Chang TY, Liao BY, Genome Biol Evol 2013 5 5 913 922 10.1093/gbe/evt055 23563973
-
(2013)
Genome Biol Evol
, vol.5
, Issue.5
, pp. 913-922
-
-
Chang, T.Y.1
Liao, B.Y.2
-
10
-
-
84870032373
-
Rapid evolution of the sequences and gene repertoires of secreted proteins in bacteria
-
10.1371/journal.pone.0049403 23189144
-
Rapid evolution of the sequences and gene repertoires of secreted proteins in bacteria. Nogueira T, Touchon M, Rocha EP, PLoS One 2012 7 11 49403 10.1371/journal.pone.0049403 23189144
-
(2012)
PLoS One
, vol.7
, Issue.11
, pp. 549403
-
-
Nogueira, T.1
Touchon, M.2
Rocha, E.P.3
-
11
-
-
0017323923
-
Biochemical evolution
-
10.1146/annurev.bi.46.070177.003041 409339
-
Biochemical evolution. Wilson AC, Carlson SS, White TJ, Annu Rev Biochem 1977 46 573 639 10.1146/annurev.bi.46.070177.003041 409339
-
(1977)
Annu Rev Biochem
, vol.46
, pp. 573-639
-
-
Wilson, A.C.1
Carlson, S.S.2
White, T.J.3
-
12
-
-
1242284655
-
An Analysis of Determinants of Amino Acids Substitution Rates in Bacterial Proteins
-
DOI 10.1093/molbev/msh004
-
An analysis of determinants of amino acids substitution rates in bacterial proteins. Rocha EP, Danchin A, Mol Biol Evol 2004 21 1 108 116 14595100 (Pubitemid 38233524)
-
(2004)
Molecular Biology and Evolution
, vol.21
, Issue.1
, pp. 108-116
-
-
Rocha, E.P.C.1
Danchin, A.2
-
13
-
-
30744441602
-
A single determinant dominates the rate of yeast protein evolution
-
DOI 10.1093/molbev/msj038
-
A single determinant dominates the rate of yeast protein evolution. Drummond DA, Raval A, Wilke CO, Mol Biol Evol 2006 23 2 327 337 16237209 (Pubitemid 43100047)
-
(2006)
Molecular Biology and Evolution
, vol.23
, Issue.2
, pp. 327-337
-
-
Drummond, D.A.1
Raval, A.2
Wilke, C.O.3
-
14
-
-
0034978556
-
Highly expressed genes in yeast evolve slowly
-
Highly expressed genes in yeast evolve slowly. Pal C, Papp B, Hurst LD, Genetics 2001 158 2 927 931 11430355 (Pubitemid 32552328)
-
(2001)
Genetics
, vol.158
, Issue.2
, pp. 927-931
-
-
Pal, C.1
Papp, B.2
Hurst, L.D.3
-
15
-
-
0142124263
-
Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution
-
DOI 10.1101/gr.1589103
-
Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution. Krylov DM, Wolf YI, Rogozin IB, Koonin EV, Genome Res 2003 13 10 2229 2235 10.1101/gr.1589103 14525925 (Pubitemid 37265987)
-
(2003)
Genome Research
, vol.13
, Issue.10
, pp. 2229-2235
-
-
Krylov, D.M.1
Wolf, Y.I.2
Rogozin, I.B.3
Koonin, E.V.4
-
16
-
-
5044252972
-
Gene expression intensity shapes evolutionary rates of the proteins encoded by the vertebrate genome
-
DOI 10.1534/genetics.104.028944
-
Gene expression intensity shapes evolutionary rates of the proteins encoded by the vertebrate genome. Subramanian S, Kumar S, Genetics 2004 168 1 373 381 10.1534/genetics.104.028944 15454550 (Pubitemid 39346602)
-
(2004)
Genetics
, vol.168
, Issue.1
, pp. 373-381
-
-
Subramanian, S.1
Kumar, S.2
-
17
-
-
17744376961
-
Evolution of proteins and gene expression levels are coupled in Drosophila and are independently associated with mRNA abundance, protein length, and number of protein-protein interactions
-
DOI 10.1093/molbev/msi122
-
Evolution of proteins and gene expression levels are coupled in Drosophila and are independently associated with mRNA abundance, protein length, and number of protein-protein interactions. Lemos B, Bettencourt BR, Meiklejohn CD, Hartl DL, Mol Biol Evol 2005 22 5 1345 1354 10.1093/molbev/msi122 15746013 (Pubitemid 40577773)
-
(2005)
Molecular Biology and Evolution
, vol.22
, Issue.5
, pp. 1345-1354
-
-
Lemos, B.1
Bettencourt, B.R.2
Meiklejohn, C.D.3
Hartl, D.L.4
-
18
-
-
33645242016
-
Evolutionary rates and expression level in Chlamydomonas
-
16361241
-
Evolutionary rates and expression level in Chlamydomonas. Popescu CE, Borza T, Bielawski JP, Lee RW, Genetics 2006 172 3 1567 1576 16361241
-
(2006)
Genetics
, vol.172
, Issue.3
, pp. 1567-1576
-
-
Popescu, C.E.1
Borza, T.2
Bielawski, J.P.3
Lee, R.W.4
-
19
-
-
33847686233
-
Gene expression and protein length influence codon usage and rates of sequence evolution in Populus tremula
-
DOI 10.1093/molbev/msl212
-
Gene expression and protein length influence codon usage and rates of sequence evolution in Populus tremula. Ingvarsson PK, Mol Biol Evol 2007 24 3 836 844 17204548 (Pubitemid 46355807)
-
(2007)
Molecular Biology and Evolution
, vol.24
, Issue.3
, pp. 836-844
-
-
Ingvarsson, P.K.1
-
20
-
-
0023650543
-
The codon Adaptation Index-a measure of directional synonymous codon usage bias, and its potential applications
-
10.1093/nar/15.3.1281 3547335
-
The codon Adaptation Index-a measure of directional synonymous codon usage bias, and its potential applications. Sharp PM, Li WH, Nucleic Acids Res 1987 15 3 1281 1295 10.1093/nar/15.3.1281 3547335
-
(1987)
Nucleic Acids Res
, vol.15
, Issue.3
, pp. 1281-1295
-
-
Sharp, P.M.1
Li, W.H.2
-
21
-
-
17244367886
-
Functional genomic analysis of the rates of protein evolution
-
DOI 10.1073/pnas.0501761102
-
Functional genomic analysis of the rates of protein evolution. Wall DP, Hirsh AE, Fraser HB, Kumm J, Giaever G, Eisen MB, Feldman MW, Proc Natl Acad Sci U S A 2005 102 15 5483 5488 10.1073/pnas.0501761102 15800036 (Pubitemid 40530284)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.15
, pp. 5483-5488
-
-
Wall, D.P.1
Hirsh, A.E.2
Fraser, H.B.3
Kumm, J.4
Giaever, G.5
Eisen, M.B.6
Feldman, M.W.7
-
22
-
-
16344369543
-
Significant impact of protein dispensability on the instantaneous rate of protein evolution
-
DOI 10.1093/molbev/msi101
-
Significant impact of protein dispensability on the instantaneous rate of protein evolution. Zhang J, He X, Mol Biol Evol 2005 22 4 1147 1155 10.1093/molbev/msi101 15689524 (Pubitemid 40471427)
-
(2005)
Molecular Biology and Evolution
, vol.22
, Issue.4
, pp. 1147-1155
-
-
Zhang, J.1
He, X.2
-
23
-
-
84859473329
-
Protein misinteraction avoidance causes highly expressed proteins to evolve slowly
-
10.1073/pnas.1117408109 22416125
-
Protein misinteraction avoidance causes highly expressed proteins to evolve slowly. Yang JR, Liao BY, Zhuang SM, Zhang J, Proc Natl Acad Sci U S A 2012 109 14 831 E840 10.1073/pnas.1117408109 22416125
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, Issue.14
-
-
Yang, J.R.1
Liao, B.Y.2
Zhuang, S.M.3
Zhang, J.4
-
24
-
-
34548357121
-
Assessing the determinants of evolutionary rates in the presence of noise
-
DOI 10.1093/molbev/msm044
-
Assessing the determinants of evolutionary rates in the presence of noise. Plotkin JB, Fraser HB, Mol Biol Evol 2007 24 5 1113 1121 10.1093/molbev/msm044 17347158 (Pubitemid 47343649)
-
(2007)
Molecular Biology and Evolution
, vol.24
, Issue.5
, pp. 1113-1121
-
-
Plotkin, J.B.1
Fraser, H.B.2
-
25
-
-
54949151498
-
Comparable contributions of structural-functional constraints and expression level to the rate of protein sequence evolution
-
10.1186/1745-6150-3-40 18840284
-
Comparable contributions of structural-functional constraints and expression level to the rate of protein sequence evolution. Wolf MY, Wolf YI, Koonin EV, Biol Direct 2008 3 40 10.1186/1745-6150-3-40 18840284
-
(2008)
Biol Direct
, vol.3
, pp. 40
-
-
Wolf, M.Y.1
Wolf, Y.I.2
Koonin, E.V.3
-
26
-
-
84874250754
-
Differential requirements for mRNA folding partially explain why highly expressed proteins evolve slowly
-
10.1073/pnas.1218066110 23382244
-
Differential requirements for mRNA folding partially explain why highly expressed proteins evolve slowly. Park C, Chen X, Yang JR, Zhang J, Proc Natl Acad Sci U S A 2013 110 8 678 E686 10.1073/pnas.1218066110 23382244
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, Issue.8
-
-
Park, C.1
Chen, X.2
Yang, J.R.3
Zhang, J.4
-
27
-
-
84857770146
-
Strong association between mRNA folding strength and protein abundance in S. Cerevisiae
-
10.1038/embor.2011.262 22249164
-
Strong association between mRNA folding strength and protein abundance in S. cerevisiae. Zur H, Tuller T, EMBO Rep 2012 13 3 272 277 10.1038/embor.2011. 262 22249164
-
(2012)
EMBO Rep
, vol.13
, Issue.3
, pp. 272-277
-
-
Zur, H.1
Tuller, T.2
-
28
-
-
0034086295
-
Absence of translationally selected synonymous codon usage bias in Helicobacter pylori
-
Absence of translationally selected synonymous codon usage bias in Helicobacter pylori. Lafay B, Atherton JC, Sharp PM, Microbiology 2000 146 Pt 4 851 860 10784043 (Pubitemid 30201032)
-
(2000)
Microbiology
, vol.146
, Issue.4
, pp. 851-860
-
-
Lafay, B.1
Atherton, J.C.2
Sharp, P.M.3
-
29
-
-
76749155783
-
The systemic imprint of growth and its uses in ecological (meta) genomics
-
10.1371/journal.pgen.1000808 20090831
-
The systemic imprint of growth and its uses in ecological (meta) genomics. Vieira-Silva S, Rocha EP, PLoS Genet 2010 6 1 1000808 10.1371/journal.pgen.1000808 20090831
-
(2010)
PLoS Genet
, vol.6
, Issue.1
, pp. 51000808
-
-
Vieira-Silva, S.1
Rocha, E.P.2
-
30
-
-
78650304100
-
Synonymous but not the same: The causes and consequences of codon bias
-
10.1038/nrg2899 21102527
-
Synonymous but not the same: the causes and consequences of codon bias. Plotkin JB, Kudla G, Nat Rev Genet 2011 12 1 32 42 10.1038/nrg2899 21102527
-
(2011)
Nat Rev Genet
, vol.12
, Issue.1
, pp. 32-42
-
-
Plotkin, J.B.1
Kudla, G.2
-
31
-
-
0035919773
-
Translational selection shapes codon usage in the GC-rich genome of Chlamydomonas reinhardtii
-
11470270
-
Translational selection shapes codon usage in the GC-rich genome of Chlamydomonas reinhardtii. Naya H, Romero H, Carels N, Zavala A, Musto H, FEBS Lett 2001 501 2-3 127 130 11470270
-
(2001)
FEBS Lett
, vol.501
, Issue.2-3
, pp. 127-130
-
-
Naya, H.1
Romero, H.2
Carels, N.3
Zavala, A.4
Musto, H.5
-
32
-
-
2142639387
-
Analyzing and enhancing mRNA translational efficiency in an Escherichia coli in vitro expression system
-
DOI 10.1016/j.bbrc.2004.04.064, PII S0006291X04007727
-
Analyzing and enhancing mRNA translational efficiency in an Escherichia coli in vitro expression system. Voges D, Watzele M, Nemetz C, Wizemann S, Buchberger B, Biochem Biophys Res Commun 2004 318 2 601 614 10.1016/j.bbrc.2004. 04.064 15120642 (Pubitemid 38553821)
-
(2004)
Biochemical and Biophysical Research Communications
, vol.318
, Issue.2
, pp. 601-614
-
-
Voges, D.1
Watzele, M.2
Nemetz, C.3
Wizemann, S.4
Buchberger, B.5
-
33
-
-
64849114915
-
Coding-sequence determinants of gene expression in Escherichia coli
-
10.1126/science.1170160 19359587
-
Coding-sequence determinants of gene expression in Escherichia coli. Kudla G, Murray AW, Tollervey D, Plotkin JB, Science 2009 324 5924 255 258 10.1126/science.1170160 19359587
-
(2009)
Science
, vol.324
, Issue.5924
, pp. 255-258
-
-
Kudla, G.1
Murray, A.W.2
Tollervey, D.3
Plotkin, J.B.4
-
34
-
-
77649198142
-
A universal trend of reduced mRNA stability near the translation- initiation site in prokaryotes and eukaryotes
-
10.1371/journal.pcbi.1000664 20140241
-
A universal trend of reduced mRNA stability near the translation- initiation site in prokaryotes and eukaryotes. Gu W, Zhou T, Wilke CO, PLoS Comput Biol 2010 6 2 1000664 10.1371/journal.pcbi.1000664 20140241
-
(2010)
PLoS Comput Biol
, vol.6
, Issue.2
, pp. 51000664
-
-
Gu, W.1
Zhou, T.2
Wilke, C.O.3
-
35
-
-
68249114427
-
General rules for optimal codon choice
-
10.1371/journal.pgen.1000556 19593368
-
General rules for optimal codon choice. Hershberg R, Petrov DA, PLoS Genet 2009 5 7 1000556 10.1371/journal.pgen.1000556 19593368
-
(2009)
PLoS Genet
, vol.5
, Issue.7
, pp. 51000556
-
-
Hershberg, R.1
Petrov, D.A.2
-
36
-
-
12844265439
-
Mechanisms of transcription-replication collisions in bacteria
-
DOI 10.1128/MCB.25.3.888-895.2005
-
Mechanisms of transcription-replication collisions in bacteria. Mirkin EV, Mirkin SM, Mol Cell Biol 2005 25 3 888 895 10.1128/MCB.25.3.888-895.2005 15657418 (Pubitemid 40165798)
-
(2005)
Molecular and Cellular Biology
, vol.25
, Issue.3
, pp. 888-895
-
-
Mirkin, E.V.1
Mirkin, S.M.2
-
37
-
-
77955448694
-
What happens when replication and transcription complexes collide?
-
20581460
-
What happens when replication and transcription complexes collide? Pomerantz RT, O'Donnell M, Cell Cycle 2010 9 13 2537 2543 20581460
-
(2010)
Cell Cycle
, vol.9
, Issue.13
, pp. 2537-2543
-
-
Pomerantz, R.T.1
O'Donnell, M.2
-
38
-
-
84857191660
-
Transcription as a source of genome instability
-
22330764
-
Transcription as a source of genome instability. Kim N, Jinks-Robertson S, Nat Rev Genet 2012 13 3 204 214 22330764
-
(2012)
Nat Rev Genet
, vol.13
, Issue.3
, pp. 204-214
-
-
Kim, N.1
Jinks-Robertson, S.2
-
39
-
-
80052137984
-
Complex principal component and correlation structure of 16 yeast genomic variables
-
10.1093/molbev/msr077 21444651
-
Complex principal component and correlation structure of 16 yeast genomic variables. Theis FJ, Latif N, Wong P, Frishman D, Mol Biol Evol 2011 28 9 2501 2512 10.1093/molbev/msr077 21444651
-
(2011)
Mol Biol Evol
, vol.28
, Issue.9
, pp. 2501-2512
-
-
Theis, F.J.1
Latif, N.2
Wong, P.3
Frishman, D.4
-
40
-
-
33749579409
-
Impacts of gene essentiality, expression pattern, and gene compactness on the evolutionary rate of mammalian proteins
-
DOI 10.1093/molbev/msl076
-
Impacts of gene essentiality, expression pattern, and gene compactness on the evolutionary rate of mammalian proteins. Liao BY, Scott NM, Zhang J, Mol Biol Evol 2006 23 11 2072 2080 10.1093/molbev/msl076 16887903 (Pubitemid 44536815)
-
(2006)
Molecular Biology and Evolution
, vol.23
, Issue.11
, pp. 2072-2080
-
-
Liao, B.-Y.1
Scott, N.M.2
Zhang, J.3
-
41
-
-
49449110197
-
Constraints imposed by non-functional protein-protein interactions on gene expression and proteome size
-
18682700
-
Constraints imposed by non-functional protein-protein interactions on gene expression and proteome size. Zhang J, Maslov S, Shakhnovich EI, Mol Syst Biol 2008 4 210 18682700
-
(2008)
Mol Syst Biol
, vol.4
, pp. 210
-
-
Zhang, J.1
Maslov, S.2
Shakhnovich, E.I.3
-
42
-
-
58149197597
-
DEG 5.0, a database of essential genes in both prokaryotes and eukaryotes
-
18974178
-
DEG 5.0, a database of essential genes in both prokaryotes and eukaryotes. Zhang R, Lin Y, Nucleic Acids Res 2009 37 Database issue 455 D458 18974178
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Zhang, R.1
Lin, Y.2
-
43
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Thompson JD, Higgins DG, Gibson TJ, Nucleic Acids Res 1994 22 22 4673 4680 10.1093/nar/22.22.4673 7984417 (Pubitemid 24354800)
-
(1994)
Nucleic Acids Research
, vol.22
, Issue.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
44
-
-
34547803197
-
PAML 4: Phylogenetic analysis by maximum likelihood
-
DOI 10.1093/molbev/msm088
-
PAML 4: phylogenetic analysis by maximum likelihood. Yang Z, Mol Biol Evol 2007 24 8 1586 1591 10.1093/molbev/msm088 17483113 (Pubitemid 47236688)
-
(2007)
Molecular Biology and Evolution
, vol.24
, Issue.8
, pp. 1586-1591
-
-
Yang, Z.1
-
45
-
-
0037250391
-
HGT-DB: A database of putative horizontally transferred genes in prokaryotic complete genomes
-
DOI 10.1093/nar/gkg004
-
HGT-DB: a database of putative horizontally transferred genes in prokaryotic complete genomes. Garcia-Vallve S, Guzman E, Montero MA, Romeu A, Nucleic Acids Res 2003 31 1 187 189 10.1093/nar/gkg004 12519978 (Pubitemid 36150361)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.1
, pp. 187-189
-
-
Garcia-Vallve, S.1
Guzman, E.2
Montero, M.A.3
Romeu, A.4
-
46
-
-
34447513240
-
DarkHorse: A method for genome-wide prediction of horizontal gene transfer
-
DOI 10.1186/gb-2007-8-2-r16
-
DarkHorse: a method for genome-wide prediction of horizontal gene transfer. Podell S, Gaasterland T, Genome Biol 2007 8 2 16 10.1186/gb-2007-8-2- r16 17274820 (Pubitemid 351851040)
-
(2007)
Genome Biology
, vol.8
, Issue.2
-
-
Podell, S.1
Gaasterland, T.2
-
47
-
-
84874271270
-
NCBI GEO: Archive for functional genomics data sets-update
-
10.1093/nar/gks1193 23193258
-
NCBI GEO: archive for functional genomics data sets-update. Barrett T, Wilhite SE, Ledoux P, Evangelista C, Kim IF, Tomashevsky M, Marshall KA, Phillippy KH, Sherman PM, Holko M, et al. Nucleic Acids Res 2013 41 D1 991 D995 10.1093/nar/gks1193 23193258
-
(2013)
Nucleic Acids Res
, vol.41
-
-
Barrett, T.1
Wilhite, S.E.2
Ledoux, P.3
Evangelista, C.4
Kim, I.F.5
Tomashevsky, M.6
Marshall, K.A.7
Phillippy, K.H.8
Sherman, P.M.9
Holko, M.10
-
48
-
-
82055164092
-
ViennaRNA Package 2.0
-
10.1186/1748-7188-6-26 22115189
-
ViennaRNA Package 2.0. Lorenz R, Bernhart SH, Honer Zu Siederdissen C, Tafer H, Flamm C, Stadler PF, Hofacker IL, Algorithms Mol Biol 2011 6 26 10.1186/1748-7188-6-26 22115189
-
(2011)
Algorithms Mol Biol
, vol.6
, pp. 26
-
-
Lorenz, R.1
Bernhart, S.H.2
Honer Zu Siederdissen, C.3
Tafer, H.4
Flamm, C.5
Stadler, P.F.6
Hofacker, I.L.7
-
49
-
-
78651324347
-
The STRING database in 2011: Functional interaction networks of proteins, globally integrated and scored
-
21045058
-
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. Szklarczyk D, Franceschini A, Kuhn M, Simonovic M, Roth A, Minguez P, Doerks T, Stark M, Muller J, Bork P, et al. Nucleic Acids Res 2011 39 Database issue 561 D568 21045058
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Szklarczyk, D.1
Franceschini, A.2
Kuhn, M.3
Simonovic, M.4
Roth, A.5
Minguez, P.6
Doerks, T.7
Stark, M.8
Muller, J.9
Bork, P.10
-
50
-
-
77954199597
-
PSORTb 3.0: Improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes
-
10.1093/bioinformatics/btq249 20472543
-
PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes. Yu NY, Wagner JR, Laird MR, Melli G, Rey S, Lo R, Dao P, Sahinalp SC, Ester M, Foster LJ, et al. Bioinformatics 2010 26 13 1608 1615 10.1093/bioinformatics/btq249 20472543
-
(2010)
Bioinformatics
, vol.26
, Issue.13
, pp. 1608-1615
-
-
Yu, N.Y.1
Wagner, J.R.2
Laird, M.R.3
Melli, G.4
Rey, S.5
Lo, R.6
Dao, P.7
Sahinalp, S.C.8
Ester, M.9
Foster, L.J.10
-
51
-
-
84876566990
-
DoriC 5.0: An updated database of oriC regions in both bacterial and archaeal genomes
-
23093601
-
DoriC 5.0: an updated database of oriC regions in both bacterial and archaeal genomes. Gao F, Luo H, Zhang CT, Nucleic Acids Res 2013 41 Database issue 90 D93 23093601
-
(2013)
Nucleic Acids Res
, vol.41
-
-
Gao, F.1
Luo, H.2
Zhang, C.T.3
|