Enhanced Ionic Transport Mechanism by Gramicidin A Confined Inside Nanopores Tuned by Atomic Layer Deposition

Journal of Physical Chemistry C

Volumn 117, Issue 29, 2013, Pages 15306-15315

  Abou Chaaya, Adib ^a   Le Poitevin, Mathilde ^a   Cabello Aguilar, Simon ^a   Balme, Sebastien ^a,b   Bechelany, Mikhael ^a   Kraszewski, Sebastian ^c   Picaud, Fabien ^c   Cambedouzou, Julien ^d   Balanzat, Emmanuel ^e   Janot, Jean Marc ^a   Thami, Thierry ^a   Miele, Philippe ^a   Dejardin, Philippe ^a  

^a UNIVERSITÉ DE MONTPELLIER   (France)

^b UNIVERSITÉ DE MONTPELLIER   (France)

^c Centre Hospitalier Universitaire de Besançon   (France)

^d DIF   (France)

^e Direction de la Recherche Fondamentale   (France)

Author keywords

[No Author keywords available]

Indexed keywords

FLEXIBLE MEMBRANES; GRAMICIDIN A; HYDROPHOBIC NANOPORES; ION TRANSPORTS; IONIC CHANNELS; IONIC TRANSPORTS; SOLID-STATE NANOPORE;

ATOMIC LAYER DEPOSITION; BIOMIMETICS; DEPOSITION; IONIC CONDUCTION;

NANOPORES;

EID: 84880806760     PISSN: 19327447     EISSN: 19327455     Source Type: Journal    
DOI: 10.1021/jp403330d     Document Type: Article

References (67)

1. Guo, W.; Cao, L. X.; Xia, J. C.; Nie, F. Q.; Ma, W.; Xue, J. M.; Song, Y. L.; Zhu, D. B.; Wang, Y. G.; Jiang, L. Energy Harvesting with Single-Ion-Selective Nanopores: A Concentration-Gradient-Driven Nanofluidic Power Source Adv. Funct. Mater. 2010, 20, 1339-1344
2. Siwy, Z. S.; Howorka, S. Engineered Voltage-Responsive Nanopores (vol 39, pg 1115, 2010) Chem. Soc. Rev. 2010, 39, 5067-5067
3. Balme, S.; Janot, J.-M.; Berardo, L.; Henn, F.o.; Bonhenry, D.; Kraszewski, S.; Picaud, F.; Ramseyer, C. New Bioinspired Membrane Made of a Biological Ion Channel Confined into the Cylindrical Nanopore of a Solid-State Polymer Nano Lett. 2011, 11, 712-716
4. Thiele, D.; Kraszewski, S.; Balme, S.; Picaud, F.; Janot, J.-M.; Déjardin, P. Structure and Ionic Selectivity of a Hybrid Polyene/Artificial Polymer Solid State Membrane Soft Matter 2013, 9, 684-691
5. Kocer, A.; Tauk, L.; Dejardin, P. Nanopore Sensors: From Hybrid to Abiotic Systems Biosens. Bioelectron. 2012, 38, 1-10
6. Hall, A. R.; Scott, A.; Rotem, D.; Mehta, K. K.; Bayley, H.; Dekker, C. Hybrid Pore Formation by Directed Insertion of Alpha-Haemolysin into Solid-State Nanopores Nat. Nanotechnol. 2010, 5, 874-877
7. Shvinka, N. E.; Caffier, G. Selectivity for Cations in Potassium and Gramicidin Channels of the Muscle Fibre Membrane Biomed. Biochim. Acta 1988, 47, 481-487
8. Sawyer, D. B.; Williams, L. P.; Whaley, W. L.; Koeppe, R. E.; Andersen, O. S. Gramicidin-A, Gramicidin-B, and Gramicidin-C Form Structurally Equivalent Ion Channels Biophys. J. 1990, 58, 1207-1212
9. Wallace, B. A. Common Structural Features in Gramicidin and Other Ion Channels Bioessays 2000, 22, 227-234
10. Allen, T. W.; Andersen, O. S.; Roux, B. Ion Permeation through a Narrow Channel: Using Gramicidin to Ascertain All-Atom Molecular Dynamics Potential of Mean Force Methodology and Biomolecular Force Fields Biophys. J. 2006, 90, 3447-3468
11. Hinton, J. F.; Fernandez, J. Q.; Shungu, D. C.; Millett, F. S. Thermodynamic Parameters for the Binding of Divalent-Cations to Gramicidin-a Incorporated into a Lipid Environment by Ti-205 Nuclear Magnetic-Resonance Biophys. J. 1989, 55, 327-330
12. Roux, B. Valence Selectivity of the Gramicidin Channel: A Molecular Dynamics Free Energy Perturbation Study Biophys. J. 1996, 71, 3177-3185
13. Balme, S.; Picaud, F.; Kraszewski, S.; Dejardin, P.; Janot, J. M.; Lepoitevin, M.; Campomanes, J.; Ramseyer, C.; Henn, F. Controlling Ionic Selectivity in Bio-Inspired Systems: Potassium Selectivity and Proton Blocking in Hybrid Biological/Solid-State Polymer Nanopore Membrane Nanoscale 2013, 5, 3961-3968
14. Strathmann, H. Membrane Separation Processes: Current Relevance and Future Opportunities AIChE J. 2001, 47, 1077-1087
15. Velleman, L.; Triani, G.; Evans, P. J.; Shapter, J. G.; Losic, D. Structural and Chemical Modification of Porous Alumina Membranes Microporous Mesoporous Mater. 2009, 126, 87-94
16. 2 to CO at a Porous Au Film J. Electroanal. Chem. 2002, 526, 125-133
17. Gilani, N.; Daryan, J. T.; Rashidi, A.; Omidkhah, M. R. Separation of Methane-Nitrogen Mixtures Using Synthesis Vertically Aligned Carbon Nanotube Membranes Appl. Surf. Sci. 2012, 258, 4819-4825
18. Lakshmi, B. B.; Patrissi, C. J.; Martin, C. R. Sol-Gel Template Synthesis of Semiconductor Oxide Micro- And Nanostructures Chem. Mater. 1997, 9, 2544-2550
19. Marichy, C.; Bechelany, M.; Pinna, N. Atomic Layer Deposition of Nanostructured Materials for Energy and Environmental Applications Adv. Mater. 2012, 24, 1017-1032
20. Willinger, M.-G.; Neri, G.; Rauwel, E.; Bonavita, A.; Micali, G.; Pinna, N. Vanadium Oxide Sensing Layer Grown on Carbon Nanotubes by a New Atomic Layer Deposition Process Nano Lett. 2008, 8, 4201-4204
21. Du, X.; George, S. M. Thickness Dependence of Sensor Response for CO Gas Sensing by Tin Oxide Films Grown Using Atomic Layer Deposition Sens. Actuators, B 2008, 135, 152-160
22. Venkatesan, B. M.; Dorvel, B.; Yemenicioglu, S.; Watkins, N.; Petrov, I.; Bashir, R. Highly Sensitive, Mechanically Stable Nanopore Sensors for DNA Analysis Adv. Mater. 2009, 21, 2771-2776
23. Martinson, A. B. F.; Elam, J. W.; Hupp, J. T.; Pellin, M. J. ZnO Nanotube Based Dye-Sensitized Solar Cells Nano Lett. 2007, 7, 2183-2187
24. 2 Layer Coated on Submicrometer-Sized ZnO Nanocrystallite Aggregates by Atomic Layer Deposition on the Performance of Dye-Sensitized Solar Cells Adv. Mater. 2010, 22, 2329-2332
25. 2-ZnO Core-Shell Aggregate Photoelectrodes of Dye-Sensitized Solar Cells J. Phys. Chem. C 2011, 115, 4927-4934
26. Hierso, J.; Sel, O.; Ringuede, A.; Laberty-Robert, C.; Bianchi, L.; Grosso, D.; Sanchez, C. Design, Synthesis, Structural and Textural Characterization, and Electrical Properties of Mesoporous Thin Films Made of Rare Earth Oxide Binaries Chem. Mater. 2009, 21, 2184-2192
27. 3 Thin Layers with Gradual Ionic to Electronic Composition Synthesized by Atomic Layer Deposition for SOFC Applications J. Mater. Chem. 2009, 19, 760-766
28. Gerritsen, E.; Emonet, N.; Caillat, C.; Jourdan, N.; Piazza, M.; Fraboulet, D.; Boeck, B.; Berthelot, A.; Smith, S.; Mazoyer, P. Evolution of Materials Technology for Stacked-Capacitors in 65 nm Embedded-DRAM Solid-State Electron. 2005, 49, 1767-1775
29. Paracchino, A.; Laporte, V.; Sivula, K.; Graetzel, M.; Thimsen, E. Highly Active Oxide Photocathode for Photoelectrochemical Water Reduction Nat. Mater. 2011, 10, 456-461
30. 2 Nanotube Arrays with Controllable Dimensions on Glass Substrates for Photocatalytic Applications ACS Appl. Mater. Interfaces 2010, 2, 498-503
31. 2 Atomic Layer Deposition J. Phys. Chem. C 2008, 112, 4573-4580
32. Ghosh, A. P.; Gerenser, L. J.; Jarman, C. M.; Fornalik, J. E. Thin-Film Encapsulation of Organic Light-Emitting Devices Appl. Phys. Lett. 2005, 86
33. Park, S. H. K.; Oh, J.; Hwang, C. S.; Lee, J. I.; Yang, Y. S.; Chu, H. Y. Ultrathin Film Encapsulation Of an OLED by ALD Electrochem. Solid State Lett. 2005, 8, H21-H23
34. 3 Deposited by Atomic Layer Deposition Appl. Phys. Lett. 2007, 90, 253511
35. 3 as Gate Dielectric for Organic Transistors: Charge Transport Phenomena in Poly-(3-hexylthiophene) Based Devices Org. Electron. 2008, 9, 198-208
36. Mailhot, B.; Rivaton, A.; Gardette, J. L.; Moustaghfir, A.; Tomasella, E.; Jacquet, M.; Ma, X. G.; Komvopoulos, K. Enhancement of the Photoprotection and Nanomechanical Properties of Polycarbonate by Deposition of Thin Ceramic Coatings J. Appl. Phys. 2006, 99, 104310
37. Raghavan, R.; Bechelany, M.; Parlinska, M.; Frey, D.; Mook, W. M.; Beyer, A.; Michler, J.; Utke, I. Nanocrystalline-to-Amorphous Transition in Nanolaminates Grown by Low Temperature Atomic Layer Deposition and Related Mechanical Properties Appl. Phys. Lett. 2012, 100
38. Whitby, J. A.; Oestlund, F.; Horvath, P.; Gabureac, M.; Riesterer, J. L.; Utke, I.; Hohl, M.; Sedlacek, L.; Jiruse, J.; Friedli, V.; Bechelany, M.; Michler, J. High Spatial Resolution Time-of-Flight Secondary Ion Mass Spectrometry for the Masses: A Novel Orthogonal ToF FIB-SIMS Instrument with In Situ AFM Adv. Mater. Sci. Eng. 2012, 2012, 180437
39. Sakamoto, S.; Philippe, L.; Bechelany, M.; Michler, J.; Asoh, H.; Ono, S. Ordered Hexagonal Array of Au Nanodots on Si Substrate Based on Colloidal Crystal Templating Nanotechnology 2008, 19, 405304
40. Bachmann, J.; Zierold, R.; Chong, Y. T.; Hauert, R.; Sturm, C.; Schmidt-Grund, R.; Rheinlander, B.; Grundmann, M.; Gosele, U.; Nielsch, K. A Practical, Self-Catalytic, Atomic Layer Deposition of Silicon Dioxide Angew. Chem., Int. Ed. 2008, 47, 6177-6179
41. Elias, J.; Bechelany, M.; Utke, I.; Erni, R.; Hosseini, D.; Michler, J.; Philippe, L. Urchin-Inspired Zinc Oxide As Building Blocks for Nanostructured Solar Cells Nano Energy 2012, 1, 696-705
42. Barry, P. H.; Lynch, J. W. Liquid Junction Potentials and Small-Cell Effects in Patch-Clamp Analysis J. Membr. Biol. 1991, 121, 101-117
43. Pickard, W. Generalizations of the Goldman-Hodgkin-Katz equation Math. Biosci. 1976, 30, 99-111
44. Phillips, J. C.; Braun, R.; Wang, W.; Gumbart, J.; Tajkhorshid, E.; Villa, E.; Chipot, C.; Skeel, R. D.; Kalé, L.; Schulten, K. Scalable Molecular Dynamics with NAMD J. Comput. Chem. 2005, 26, 1781-1802
45. Feller, S. Constant Pressure Molecular Dynamics Simulation: The Langevin Piston Method J. Chem. Phys. 1995, 103, 4613
46. Darden, T.; York, D.; Pedersen, L. Particle Mesh Ewald: An N.log(N) Method for Ewald Sums in Large Systems J. Chem. Phys. 1993, 98, 10089-10092
47. MacKerell, A. D.; Bashford, D.; Bellott, R. L.; Dunbrack, J. D.; Evanseck, M. J.; Field, S.; Fischer, J.; Gao, H.; Guo, S.; Ha, D.; Joseph-McCarthy, L.; Kuchnir, K.; Kuczera, F. T. K.; Lau, C.; Mattos, S.; Michnick, T.; Ngo, D. T.; Nguyen, B.; Prodhom, W. E.; Reiher, B.; Roux, M.; Schlenkrich, J. C.; Smith, R.; Stote, J.; Straub, M.; Watanabe, J.; Wirkiewicz-Kuczera, D.; Yin; Karplus, M. All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of Proteins J. Phys. Chem. B 1998, 102, 3586-3616
48. Jorgensen, W. Comparison of Simple Potential Functions for Simulating Liquid Water J. Chem. Phys. 1983, 79, 926
49. Bedrov, D.; Smith, G. D.; Davande, H.; Li, L. Passive Transport of C60 Fullerenes through a Lipid Membrane: A Molecular Dynamics Simulation Study J. Phys. Chem. B 2008, 112, 2078-2084
50. Bonhenry, D.; Kraszewski, S.; Picaud, F.; Ramseyer, C.; Balme, S.b.; Janot, J. M.; Henn, F. Stability of the Gramicidin-A Channel Structure in View of Nanofiltration: A Computational and Experimental Study Soft Matter 2011, 7, 10659
51. Sirijarukul, S.; Balanzat, E.; Vasina, E. N.; Dejardin, P. Flat Sheet Membrane with Controlled Variation of Pore Density and Pore Size in a Direction Parallel to the Surface J. Membr. Sci. 2007, 296, 185-194
52. Dejardin, P.; Vasina, E. N.; Berezkin, V. V.; Sobolev, V. D.; Volkov, V. I. Streaming Potential in Cylindrical Pores of Poly(ethylene terephthalate) Track-Etched Membranes: Variation of Apparent Zeta Potential with Pore Radius Langmuir 2005, 21, 4680-4685
53. Powell, M. R.; Cleary, L.; Davenport, M.; Shea, K. J.; Siwy, Z. S. Electric-Field-Induced Wetting and Dewetting in Single Hydrophobic Nanopores Na. Nanotechnol. 2011, 6, 798-802
54. Jur, J. S.; Spagnola, J. C.; Lee, K.; Gong, B.; Peng, Q.; Parsons, G. N. Temperature-Dependent Subsurface Growth during Atomic Layer Deposition on Polypropylene and Cellulose Fibers Langmuir 2010, 26, 8239-8244
55. Chen, Z.; Jiang, Y. B.; Dunphy, D. R.; Adams, D. P.; Hodges, C.; Liu, N. G.; Zhang, N.; Xomeritakis, G.; Jin, X. Z.; Aluru, N. R.; Gaik, S. J.; Hillhouse, H. W.; Brinker, C. J. DNA Translocation through an Array of Kinked Nanopores Nat. Mater. 2010, 9, 667-675
56. Canlas, C. P.; Lu, J. L.; Ray, N. A.; Grosso-Giordano, N. A.; Lee, S.; Elam, J. W.; Winans, R. E.; Van Duyne, R. P.; Stair, P. C.; Notestein, J. M. Shape-Selective Sieving Layers on an Oxide Catalyst Surface Nature Chem. 2012, 4, 1030-1036
57. 3 Nanolaminates Fabricated by Atomic Layer Deposition: Growth and Surface Roughness Measurements Thin Solid Films 2002, 414, 43-55
58. G., P. X-ray low angle scattering of dense colloid systems. Part I. (Die Röntgenkleinwinkelstreuung von dichtgepackten kolloiden systemen. I. Teil.) Koll. Zeit. 1951, 124, 83-114
59. Porod, G. Die Röntgenkleinwinkelstreuung von dichtgepackten kolloiden Systemen Koll. Zeit. 1952, 125, 51-57
60. Puniredd, S. R.; Assad, O.; Haick, H. Highly Stable Organic Modification of Si(111) Surfaces: Towards Reacting Si with Further Functionalities while Preserving the Desirable Chemical Properties of Full Si-C Atop Site Terminations J. Am. Chem. Soc. 2008, 130, 9184-9185
61. Cimatu, K. A.; Mahurin, S. M.; Meyer, K. A.; Shaw, R. W. Nanoscale Chemical Imaging of Zinc Oxide Nanowire Corrosion J. Phys. Chem. C 2012, 116, 10405-10414
62. Smart, O. S.; Goodfellow, J. M.; Wallace, B. A. The Pore Dimensions of Gramicidin A Biophys. J. 1993, 65, 2455-2460
63. Allen, T. W.; Andersen, O. S.; Roux, B. Molecular Dynamics Potential of Mean Force Calculations As a Tool for Understanding Ion Permeation and Selectivity in Narrow Channels Biophys. Chem. 2006, 124, 251-267
64. Neher, E.; Sandblom, J.; Eisenman, G. Ionic Selectivity, Saturation, and Block in Gramicidin-A Channels 0.2. Saturation Behavior of Single Channel Conductances and Evidence for Existence of Multiple Binding-Sites in Channel J. Membr. Biol. 1978, 40, 97-116
65. Sandblom, J.; Eisenman, G.; Neher, E. Ionic Selectivity, Saturation and Block in Gramicidin-a Channels-0.1. Theory for Electrical-Properties of Ion-Selective Channels Having 2 Pairs of Binding-Sites and Multiple Conductance States J. Membr. Biol. 1977, 31, 383-417
66. Strickholm, A. Ionic Permeability of K, Na, and Cl in Potassium-Depolarized Nerve-Dependency on Ph, Cooperative Effects, and Action of Tetrodotoxin Biophys. J. 1981, 35, 677-697
67. Roux, B.; Karplus, M. Ion-Transport in a Model Gramicidin Channel-Structure and Thermodynamics Biophys. J. 1991, 59, 961-981