-
1
-
-
0035282078
-
Revised nomenclature for high mobility group (HMG) chromosomal proteins
-
Bustin M, (2001) Revised nomenclature for high mobility group (HMG) chromosomal proteins. Trends Biochem Sci 26: 152-153.
-
(2001)
Trends Biochem Sci
, vol.26
, pp. 152-153
-
-
Bustin, M.1
-
2
-
-
84880802911
-
-
eLS. DOI: 10.1002/9780470015902.a0002325.pub2
-
Koopman, P. 2010. HMG Domain Superfamily of DNA-bending Proteins: HMG, UBF, TCF, LEF, SOX, SRY and Related Proteins. eLS. DOI: 10.1002/9780470015902.a0002325.pub2.
-
(2010)
HMG Domain Superfamily of DNA-bending Proteins: HMG, UBF, TCF, LEF, SOX, SRY and Related Proteins
-
-
Koopman, P.1
-
3
-
-
35748967851
-
High-mobility group box 1 (HMGB1) protein at the crossroads between innate and adaptive immunity
-
Bianchi ME, Manfredi AA, (2007) High-mobility group box 1 (HMGB1) protein at the crossroads between innate and adaptive immunity. Immunol Rev 220: 35-46.
-
(2007)
Immunol Rev
, vol.220
, pp. 35-46
-
-
Bianchi, M.E.1
Manfredi, A.A.2
-
4
-
-
70449092388
-
HMGB proteins function as universal sentinels for nucleic-acid-mediated innate immune responses
-
Yanai H, Ban T, Wang Z, Choi MK, Kawamura T, et al. (2009) HMGB proteins function as universal sentinels for nucleic-acid-mediated innate immune responses. Nature 462: 99-103.
-
(2009)
Nature
, vol.462
, pp. 99-103
-
-
Yanai, H.1
Ban, T.2
Wang, Z.3
Choi, M.K.4
Kawamura, T.5
-
5
-
-
0027268618
-
Solution structure of a DNA-binding domain from HMG1
-
Read CM, Cary PD, Crane-Robinson C, Driscoll PC, Norman DG, (1993) Solution structure of a DNA-binding domain from HMG1. Nucleic Acids Res 21: 3427-3436.
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 3427-3436
-
-
Read, C.M.1
Cary, P.D.2
Crane-Robinson, C.3
Driscoll, P.C.4
Norman, D.G.5
-
6
-
-
0027414641
-
Structure of the HMG box motif in the B-domain of HMG1
-
Weir HM, Kraulis PJ, Hill CS, Raine AR, Laue ED, et al. (1993) Structure of the HMG box motif in the B-domain of HMG1. EMBO J 12: 1311-1319.
-
(1993)
EMBO J
, vol.12
, pp. 1311-1319
-
-
Weir, H.M.1
Kraulis, P.J.2
Hill, C.S.3
Raine, A.R.4
Laue, E.D.5
-
7
-
-
0026643104
-
The HMG domain of lymphoid enhancer factor 1 bends DNA and facilitates assembly of functional nucleoprotein structures
-
Giese K, Cox J, Grosschedl R, (1992) The HMG domain of lymphoid enhancer factor 1 bends DNA and facilitates assembly of functional nucleoprotein structures. Cell 69: 185-195.
-
(1992)
Cell
, vol.69
, pp. 185-195
-
-
Giese, K.1
Cox, J.2
Grosschedl, R.3
-
8
-
-
74549226503
-
HMGB proteins: interactions with DNA and chromatin
-
Stros M, (2010) HMGB proteins: interactions with DNA and chromatin. Biochim Biophys Acta 1799: 101-113.
-
(2010)
Biochim Biophys Acta
, vol.1799
, pp. 101-113
-
-
Stros, M.1
-
9
-
-
0032900464
-
Diversification pattern of the HMG and SOX family members during evolution
-
Soullier S, Jay P, Poulat F, Vanacker JM, Berta P, et al. (1999) Diversification pattern of the HMG and SOX family members during evolution. J Mol Evol 48: 517-527.
-
(1999)
J Mol Evol
, vol.48
, pp. 517-527
-
-
Soullier, S.1
Jay, P.2
Poulat, F.3
Vanacker, J.M.4
Berta, P.5
-
10
-
-
0025280048
-
Nucleolar transcription factor hUBF contains a DNA-binding motif with homology to HMG proteins
-
Jantzen HM, Admon A, Bell SP, Tjian R, (1990) Nucleolar transcription factor hUBF contains a DNA-binding motif with homology to HMG proteins. Nature 344: 830-836.
-
(1990)
Nature
, vol.344
, pp. 830-836
-
-
Jantzen, H.M.1
Admon, A.2
Bell, S.P.3
Tjian, R.4
-
11
-
-
0025328296
-
A gene mapping to the sex-determining region of the mouse Y chromosome is a member of a novel family of embryonically expressed genes
-
Gubbay J, Collignon J, Koopman P, Capel B, Economou A, et al. (1990) A gene mapping to the sex-determining region of the mouse Y chromosome is a member of a novel family of embryonically expressed genes. Nature 346: 245-250.
-
(1990)
Nature
, vol.346
, pp. 245-250
-
-
Gubbay, J.1
Collignon, J.2
Koopman, P.3
Capel, B.4
Economou, A.5
-
12
-
-
0026019629
-
Identification and cloning of TCF-1, a T lymphocyte-specific transcription factor containing a sequence-specific HMG box
-
van de Wetering M, Oosterwegel M, Dooijes D, Clevers H, (1991) Identification and cloning of TCF-1, a T lymphocyte-specific transcription factor containing a sequence-specific HMG box. EMBO J 10: 123-132.
-
(1991)
EMBO J
, vol.10
, pp. 123-132
-
-
van de Wetering, M.1
Oosterwegel, M.2
Dooijes, D.3
Clevers, H.4
-
13
-
-
0025326469
-
Neurospora crassa a mating-type region
-
Staben C, Yanofsky C, (1990) Neurospora crassa a mating-type region. Proc Natl Acad Sci U S A 87: 4917-4921.
-
(1990)
Proc Natl Acad Sci U S A
, vol.87
, pp. 4917-4921
-
-
Staben, C.1
Yanofsky, C.2
-
14
-
-
0036135638
-
UBF binding in vivo is not restricted to regulatory sequences within the vertebrate ribosomal DNA repeat
-
O'Sullivan AC, Sullivan GJ, McStay B, (2002) UBF binding in vivo is not restricted to regulatory sequences within the vertebrate ribosomal DNA repeat. Mol Cell Biol 22: 657-668.
-
(2002)
Mol Cell Biol
, vol.22
, pp. 657-668
-
-
O'Sullivan, A.C.1
Sullivan, G.J.2
McStay, B.3
-
15
-
-
0037107455
-
Hmo1, an HMG-box protein, belongs to the yeast ribosomal DNA transcription system
-
Gadal O, Labarre S, Boschiero C, Thuriaux P, (2002) Hmo1, an HMG-box protein, belongs to the yeast ribosomal DNA transcription system. Embo J 21: 5498-5507.
-
(2002)
Embo J
, vol.21
, pp. 5498-5507
-
-
Gadal, O.1
Labarre, S.2
Boschiero, C.3
Thuriaux, P.4
-
16
-
-
71049114223
-
The yeast high mobility group protein HMO2, a subunit of the chromatin-remodeling complex INO80, binds DNA ends
-
Ray S, Grove A, (2009) The yeast high mobility group protein HMO2, a subunit of the chromatin-remodeling complex INO80, binds DNA ends. Nucleic Acids Res 37: 6389-6399.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 6389-6399
-
-
Ray, S.1
Grove, A.2
-
17
-
-
74549177555
-
Nhp6: a small but powerful effector of chromatin structure in Saccharomyces cerevisiae
-
Stillman DJ, (2010) Nhp6: a small but powerful effector of chromatin structure in Saccharomyces cerevisiae. Biochim Biophys Acta 1799: 175-180.
-
(2010)
Biochim Biophys Acta
, vol.1799
, pp. 175-180
-
-
Stillman, D.J.1
-
18
-
-
0027155251
-
Essential role of the HMG domain in the function of yeast mitochondrial histone HM: functional complementation of HM by the nuclear nonhistone protein NHP6A
-
Kao LR, Megraw TL, Chae CB, (1993) Essential role of the HMG domain in the function of yeast mitochondrial histone HM: functional complementation of HM by the nuclear nonhistone protein NHP6A. Proc Natl Acad Sci U S A 90: 5598-5602.
-
(1993)
Proc Natl Acad Sci U S A
, vol.90
, pp. 5598-5602
-
-
Kao, L.R.1
Megraw, T.L.2
Chae, C.B.3
-
19
-
-
0028283154
-
The ORD1 gene encodes a transcription factor involved in oxygen regulation and is identical to IXR1, a gene that confers cisplatin sensitivity to Saccharomyces cerevisiae
-
Lambert JR, Bilanchone VW, Cumsky MG, (1994) The ORD1 gene encodes a transcription factor involved in oxygen regulation and is identical to IXR1, a gene that confers cisplatin sensitivity to Saccharomyces cerevisiae. Proc Natl Acad Sci U S A 91: 7345-7349.
-
(1994)
Proc Natl Acad Sci U S A
, vol.91
, pp. 7345-7349
-
-
Lambert, J.R.1
Bilanchone, V.W.2
Cumsky, M.G.3
-
20
-
-
79958001799
-
Ixr1 is required for the expression of the ribonucleotide reductase Rnr1 and maintenance of dNTP pools
-
Tsaponina O, Barsoum E, Astrom SU, Chabes A, (2011) Ixr1 is required for the expression of the ribonucleotide reductase Rnr1 and maintenance of dNTP pools. PLoS Genet 7: e1002061.
-
(2011)
PLoS Genet
, vol.7
-
-
Tsaponina, O.1
Barsoum, E.2
Astrom, S.U.3
Chabes, A.4
-
21
-
-
34047248915
-
S. pombe LSD1 homologs regulate heterochromatin propagation and euchromatic gene transcription
-
Lan F, Zaratiegui M, Villen J, Vaughn MW, Verdel A, et al. (2007) S. pombe LSD1 homologs regulate heterochromatin propagation and euchromatic gene transcription. Mol Cell 26: 89-101.
-
(2007)
Mol Cell
, vol.26
, pp. 89-101
-
-
Lan, F.1
Zaratiegui, M.2
Villen, J.3
Vaughn, M.W.4
Verdel, A.5
-
22
-
-
30344475256
-
Homozygous inactivation of Sox9 causes complete XY sex reversal in mice
-
Barrionuevo F, Bagheri-Fam S, Klattig J, Kist R, Taketo MM, et al. (2006) Homozygous inactivation of Sox9 causes complete XY sex reversal in mice. Biol Reprod 74: 195-201.
-
(2006)
Biol Reprod
, vol.74
, pp. 195-201
-
-
Barrionuevo, F.1
Bagheri-Fam, S.2
Klattig, J.3
Kist, R.4
Taketo, M.M.5
-
23
-
-
0028135336
-
Campomelic dysplasia and autosomal sex reversal caused by mutations in an SRY-related gene
-
Foster JW, Dominguez-Steglich MA, Guioli S, Kwok C, Weller PA, et al. (1994) Campomelic dysplasia and autosomal sex reversal caused by mutations in an SRY-related gene. Nature 372: 525-530.
-
(1994)
Nature
, vol.372
, pp. 525-530
-
-
Foster, J.W.1
Dominguez-Steglich, M.A.2
Guioli, S.3
Kwok, C.4
Weller, P.A.5
-
24
-
-
0028589588
-
Autosomal sex reversal and campomelic dysplasia are caused by mutations in and around the SRY-related gene SOX9
-
Wagner T, Wirth J, Meyer J, Zabel B, Held M, et al. (1994) Autosomal sex reversal and campomelic dysplasia are caused by mutations in and around the SRY-related gene SOX9. Cell 79: 1111-1120.
-
(1994)
Cell
, vol.79
, pp. 1111-1120
-
-
Wagner, T.1
Wirth, J.2
Meyer, J.3
Zabel, B.4
Held, M.5
-
25
-
-
0347950062
-
Turning on the male-SRY, SOX9 and sex determination in mammals
-
Knower KC, Kelly S, Harley VR, (2003) Turning on the male-SRY, SOX9 and sex determination in mammals. Cytogenet Genome Res 101: 185-198.
-
(2003)
Cytogenet Genome Res
, vol.101
, pp. 185-198
-
-
Knower, K.C.1
Kelly, S.2
Harley, V.R.3
-
26
-
-
77953748116
-
Mating systems and sexual morphogenesis in Ascomycetes
-
In: Borkovich KA, Ebbole DJ, editors. Washington, DC: ASM Press
-
Debuchy R, Berteaux-Lecellier V, Silar P (2010) Mating systems and sexual morphogenesis in Ascomycetes. In: Borkovich KA, Ebbole DJ, editors. Cellular and Molecular Biology of Filamentous Fungi. Washington, DC: ASM Press. pp. 501-535.
-
(2010)
Cellular and Molecular Biology of Filamentous Fungi
, pp. 501-535
-
-
Debuchy, R.1
Berteaux-Lecellier, V.2
Silar, P.3
-
27
-
-
78650097545
-
Tracing the origin of the fungal alpha1 domain places its ancestor in the HMG-box superfamily: implication for fungal mating-type evolution
-
Martin T, Lu SW, van Tilbeurgh H, Ripoll DR, Dixelius C, et al. (2010) Tracing the origin of the fungal alpha1 domain places its ancestor in the HMG-box superfamily: implication for fungal mating-type evolution. PLoS One 5: e15199.
-
(2010)
PLoS One
, vol.5
-
-
Martin, T.1
Lu, S.W.2
van Tilbeurgh, H.3
Ripoll, D.R.4
Dixelius, C.5
-
28
-
-
1242319544
-
Evolution of the MAT locus and its Ho endonuclease in yeast species
-
Butler G, Kenny C, Fagan A, Kurischko C, Gaillardin C, et al. (2004) Evolution of the MAT locus and its Ho endonuclease in yeast species. Proc Natl Acad Sci U S A 101: 1632-1637.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 1632-1637
-
-
Butler, G.1
Kenny, C.2
Fagan, A.3
Kurischko, C.4
Gaillardin, C.5
-
29
-
-
0031453292
-
REO1 and ROX1 are alleles of the same gene which encodes a transcriptional repressor of hypoxic genes in Saccharomyces cerevisiae
-
Kwast KE, Burke PV, Brown K, Poyton RO, (1997) REO1 and ROX1 are alleles of the same gene which encodes a transcriptional repressor of hypoxic genes in Saccharomyces cerevisiae. Curr Genet 32: 377-383.
-
(1997)
Curr Genet
, vol.32
, pp. 377-383
-
-
Kwast, K.E.1
Burke, P.V.2
Brown, K.3
Poyton, R.O.4
-
30
-
-
0026038558
-
Schizosaccharomyces pombe ste11+ encodes a transcription factor with an HMG motif that is a critical regulator of sexual development
-
Sugimoto A, Iino Y, Maeda T, Watanabe Y, Yamamoto M, (1991) Schizosaccharomyces pombe ste11+ encodes a transcription factor with an HMG motif that is a critical regulator of sexual development. Genes Dev 5: 1990-1999.
-
(1991)
Genes Dev
, vol.5
, pp. 1990-1999
-
-
Sugimoto, A.1
Iino, Y.2
Maeda, T.3
Watanabe, Y.4
Yamamoto, M.5
-
31
-
-
0037405726
-
Ste11p, a high-mobility-group box DNA-binding protein, undergoes pheromone- and nutrient-regulated nuclear-cytoplasmic shuttling
-
Qin J, Kang W, Leung B, McLeod M, (2003) Ste11p, a high-mobility-group box DNA-binding protein, undergoes pheromone- and nutrient-regulated nuclear-cytoplasmic shuttling. Mol Cell Biol 23: 3253-3264.
-
(2003)
Mol Cell Biol
, vol.23
, pp. 3253-3264
-
-
Qin, J.1
Kang, W.2
Leung, B.3
McLeod, M.4
-
32
-
-
78650160095
-
Structure, function, and phylogeny of the mating locus in the Rhizopus oryzae complex
-
Gryganskyi AP, Lee SC, Litvintseva AP, Smith ME, Bonito G, et al. (2010) Structure, function, and phylogeny of the mating locus in the Rhizopus oryzae complex. PLoS One 5: e15273.
-
(2010)
PLoS One
, vol.5
-
-
Gryganskyi, A.P.1
Lee, S.C.2
Litvintseva, A.P.3
Smith, M.E.4
Bonito, G.5
-
33
-
-
38049115135
-
Identification of the sex genes in an early diverged fungus
-
Idnurm A, Walton FJ, Floyd A, Heitman J, (2008) Identification of the sex genes in an early diverged fungus. Nature 451: 193-196.
-
(2008)
Nature
, vol.451
, pp. 193-196
-
-
Idnurm, A.1
Walton, F.J.2
Floyd, A.3
Heitman, J.4
-
34
-
-
55249086237
-
Microsporidia evolved from ancestral sexual fungi
-
Lee SC, Corradi N, Byrnes EJ 3rd, Torres-Martinez S, Dietrich FS, et al. (2008) Microsporidia evolved from ancestral sexual fungi. Curr Biol 18: 1675-1679.
-
(2008)
Curr Biol
, vol.18
, pp. 1675-1679
-
-
Lee, S.C.1
Corradi, N.2
Byrnes III, E.J.3
Torres-Martinez, S.4
Dietrich, F.S.5
-
35
-
-
84859129496
-
The mating-related loci sexM and sexP of the zygomycetous fungus Mucor mucedo and their transcriptional regulation by trisporoid pheromones
-
Wetzel J, Burmester A, Kolbe M, Wostemeyer J, (2012) The mating-related loci sexM and sexP of the zygomycetous fungus Mucor mucedo and their transcriptional regulation by trisporoid pheromones. Microbiology 158: 1016-1023.
-
(2012)
Microbiology
, vol.158
, pp. 1016-1023
-
-
Wetzel, J.1
Burmester, A.2
Kolbe, M.3
Wostemeyer, J.4
-
36
-
-
77956297242
-
Evolution of the sex-related locus and genomic features shared in microsporidia and fungi
-
Lee SC, Corradi N, Doan S, Dietrich FS, Keeling PJ, et al. (2010) Evolution of the sex-related locus and genomic features shared in microsporidia and fungi. PLoS One 5: e10539.
-
(2010)
PLoS One
, vol.5
-
-
Lee, S.C.1
Corradi, N.2
Doan, S.3
Dietrich, F.S.4
Keeling, P.J.5
-
37
-
-
13844313005
-
The high-mobility-group domain transcription factor Rop1 is a direct regulator of prf1 in Ustilago maydis
-
Brefort T, Muller P, Kahmann R, (2005) The high-mobility-group domain transcription factor Rop1 is a direct regulator of prf1 in Ustilago maydis. Eukaryot Cell 4: 379-391.
-
(2005)
Eukaryot Cell
, vol.4
, pp. 379-391
-
-
Brefort, T.1
Muller, P.2
Kahmann, R.3
-
38
-
-
0029937938
-
The pheromone response factor coordinates filamentous growth and pathogenicity in Ustilago maydis
-
Hartmann HA, Kahmann R, Bolker M, (1996) The pheromone response factor coordinates filamentous growth and pathogenicity in Ustilago maydis. EMBO J 15: 1632-1641.
-
(1996)
EMBO J
, vol.15
, pp. 1632-1641
-
-
Hartmann, H.A.1
Kahmann, R.2
Bolker, M.3
-
39
-
-
2442695651
-
Identification of the pheromone response element in Ustilago maydis
-
Urban M, Kahmann R, Bolker M, (1996) Identification of the pheromone response element in Ustilago maydis. Mol Gen Genet 251: 31-37.
-
(1996)
Mol Gen Genet
, vol.251
, pp. 31-37
-
-
Urban, M.1
Kahmann, R.2
Bolker, M.3
-
40
-
-
0031903846
-
Molecular analysis of pcc1, a gene that leads to A-regulated sexual morphogenesis in Coprinus cinereus
-
Murata Y, Fujii M, Zolan ME, Kamada T, (1998) Molecular analysis of pcc1, a gene that leads to A-regulated sexual morphogenesis in Coprinus cinereus. Genetics 149: 1753-1761.
-
(1998)
Genetics
, vol.149
, pp. 1753-1761
-
-
Murata, Y.1
Fujii, M.2
Zolan, M.E.3
Kamada, T.4
-
41
-
-
84862532332
-
Analysis of Cryptococcus neoformans sexual development reveals rewiring of the pheromone-response network by a change in transcription factor identity
-
Kruzel EK, Giles SS, Hull CM, (2012) Analysis of Cryptococcus neoformans sexual development reveals rewiring of the pheromone-response network by a change in transcription factor identity. Genetics 191: 435-449.
-
(2012)
Genetics
, vol.191
, pp. 435-449
-
-
Kruzel, E.K.1
Giles, S.S.2
Hull, C.M.3
-
42
-
-
77953192777
-
Transcription factors Mat2 and Znf2 operate cellular circuits orchestrating opposite- and same-sex mating in Cryptococcus neoformans
-
Lin X, Jackson JC, Feretzaki M, Xue C, Heitman J, (2010) Transcription factors Mat2 and Znf2 operate cellular circuits orchestrating opposite- and same-sex mating in Cryptococcus neoformans. PLoS Genet 6: e1000953.
-
(2010)
PLoS Genet
, vol.6
-
-
Lin, X.1
Jackson, J.C.2
Feretzaki, M.3
Xue, C.4
Heitman, J.5
-
43
-
-
80055103105
-
A phenome-based functional analysis of transcription factors in the cereal head blight fungus, Fusarium graminearum
-
Son H, Seo YS, Min K, Park AR, Lee J, et al. (2011) A phenome-based functional analysis of transcription factors in the cereal head blight fungus, Fusarium graminearum. PLoS Pathog 7: e1002310.
-
(2011)
PLoS Pathog
, vol.7
-
-
Son, H.1
Seo, Y.S.2
Min, K.3
Park, A.R.4
Lee, J.5
-
44
-
-
0036690293
-
Two copies of mthmg1, encoding a novel mitochondrial HMG-like protein, delay accumulation of mitochondrial DNA deletions in Podospora anserina
-
Dequard-Chablat M, Allandt C, (2002) Two copies of mthmg1, encoding a novel mitochondrial HMG-like protein, delay accumulation of mitochondrial DNA deletions in Podospora anserina. Eukaryot Cell 1: 503-513.
-
(2002)
Eukaryot Cell
, vol.1
, pp. 503-513
-
-
Dequard-Chablat, M.1
Allandt, C.2
-
45
-
-
0026686147
-
The mating types of Podospora anserina: functional analysis and sequence of the fertilization domains
-
Debuchy R, Coppin E, (1992) The mating types of Podospora anserina: functional analysis and sequence of the fertilization domains. Mol Gen Genet 233: 113-121.
-
(1992)
Mol Gen Genet
, vol.233
, pp. 113-121
-
-
Debuchy, R.1
Coppin, E.2
-
46
-
-
0027141407
-
The mat- allele of Podospora anserina contains three regulatory genes required for the development of fertilized female organs
-
Debuchy R, Arnaise S, Lecellier G, (1993) The mat- allele of Podospora anserina contains three regulatory genes required for the development of fertilized female organs. Mol Gen Genet 241: 667-673.
-
(1993)
Mol Gen Genet
, vol.241
, pp. 667-673
-
-
Debuchy, R.1
Arnaise, S.2
Lecellier, G.3
-
47
-
-
38849156753
-
Cochliobolus and Podospora: mechanism of sex determination and the evolution of reproductive lifestyle
-
In: Heitman J, Kronstad JW, Taylor JW, Casselton LA, editors. Washington, DC: ASM Press
-
Turgeon BG, Debuchy R (2007) Cochliobolus and Podospora: mechanism of sex determination and the evolution of reproductive lifestyle. In: Heitman J, Kronstad JW, Taylor JW, Casselton LA, editors. Sex in Fungi, molecular determination and evolutionary implications. Washington, DC: ASM Press. pp. 93-121.
-
(2007)
Sex in Fungi, molecular determination and evolutionary implications
, pp. 93-121
-
-
Turgeon, B.G.1
Debuchy, R.2
-
48
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
-
49
-
-
41349093546
-
FTFD: an informatics pipeline supporting phylogenomic analysis of fungal transcription factors
-
Park J, Park J, Jang S, Kim S, Kong S, et al. (2008) FTFD: an informatics pipeline supporting phylogenomic analysis of fungal transcription factors. Bioinformatics 24: 1024-1025.
-
(2008)
Bioinformatics
, vol.24
, pp. 1024-1025
-
-
Park, J.1
Park, J.2
Jang, S.3
Kim, S.4
Kong, S.5
-
50
-
-
0035798406
-
Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure
-
Gough J, Karplus K, Hughey R, Chothia C, (2001) Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure. J Mol Biol 313: 903-919.
-
(2001)
J Mol Biol
, vol.313
, pp. 903-919
-
-
Gough, J.1
Karplus, K.2
Hughey, R.3
Chothia, C.4
-
51
-
-
78651285748
-
CDD: a Conserved Domain Database for the functional annotation of proteins
-
Marchler-Bauer A, Lu S, Anderson JB, Chitsaz F, Derbyshire MK, et al. (2011) CDD: a Conserved Domain Database for the functional annotation of proteins. Nucleic Acids Res 39: D225-229.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Marchler-Bauer, A.1
Lu, S.2
Anderson, J.B.3
Chitsaz, F.4
Derbyshire, M.K.5
-
52
-
-
77649130916
-
FUNGIpath: a tool to assess fungal metabolic pathways predicted by orthology
-
Grossetete S, Labedan B, Lespinet O, (2010) FUNGIpath: a tool to assess fungal metabolic pathways predicted by orthology. BMC Genomics 11: 81.
-
(2010)
BMC Genomics
, vol.11
, pp. 81
-
-
Grossetete, S.1
Labedan, B.2
Lespinet, O.3
-
53
-
-
48949118871
-
The genome sequence of the model ascomycete fungus Podospora anserina
-
Espagne E, Lespinet O, Malagnac F, Da Silva C, Jaillon O, et al. (2008) The genome sequence of the model ascomycete fungus Podospora anserina. Genome Biol 9: R77.
-
(2008)
Genome Biol
, vol.9
-
-
Espagne, E.1
Lespinet, O.2
Malagnac, F.3
Da Silva, C.4
Jaillon, O.5
-
54
-
-
84892669458
-
Modeling the structure of yeast MATα1: an HMG-box motif with a C-terminal helical extension
-
Jackson D, Lawson T, Villafane R, Gary L, (2013) Modeling the structure of yeast MATα1: an HMG-box motif with a C-terminal helical extension. Open J Biophys 3: 1-12.
-
(2013)
Open J Biophys
, vol.3
, pp. 1-12
-
-
Jackson, D.1
Lawson, T.2
Villafane, R.3
Gary, L.4
-
55
-
-
67651162556
-
Neurospora crassa fmf-1 encodes the homologue of the Schizosaccharomyces pombe Ste11p regulator of sexual development
-
Iyer SV, Ramakrishnan M, Kasbekar DP, (2009) Neurospora crassa fmf-1 encodes the homologue of the Schizosaccharomyces pombe Ste11p regulator of sexual development. J Genet 88: 33-39.
-
(2009)
J Genet
, vol.88
, pp. 33-39
-
-
Iyer, S.V.1
Ramakrishnan, M.2
Kasbekar, D.P.3
-
56
-
-
0018578436
-
A neurospora mutation that arrests perithecial development as either male or female parent
-
Johnson TE, (1979) A neurospora mutation that arrests perithecial development as either male or female parent. Genetics 92: 1107-1120.
-
(1979)
Genetics
, vol.92
, pp. 1107-1120
-
-
Johnson, T.E.1
-
57
-
-
12144287318
-
Lessons from the genome sequence of Neurospora crassa: tracing the path from genomic blueprint to multicellular organism
-
Borkovich KA, Alex LA, Yarden O, Freitag M, Turner GE, et al. (2004) Lessons from the genome sequence of Neurospora crassa: tracing the path from genomic blueprint to multicellular organism. Microbiol Mol Biol Rev 68: 1-108.
-
(2004)
Microbiol Mol Biol Rev
, vol.68
, pp. 1-108
-
-
Borkovich, K.A.1
Alex, L.A.2
Yarden, O.3
Freitag, M.4
Turner, G.E.5
-
58
-
-
70449584528
-
Gene responses to oxygen availability in Kluyveromyces lactis: an insight on the evolution of the oxygen-responding system in yeast
-
Fang ZA, Wang GH, Chen AL, Li YF, Liu JP, et al. (2009) Gene responses to oxygen availability in Kluyveromyces lactis: an insight on the evolution of the oxygen-responding system in yeast. PLoS One 4: e7561.
-
(2009)
PLoS One
, vol.4
-
-
Fang, Z.A.1
Wang, G.H.2
Chen, A.L.3
Li, Y.F.4
Liu, J.P.5
-
59
-
-
0035103777
-
Rfg1, a protein related to the Saccharomyces cerevisiae hypoxic regulator Rox1, controls filamentous growth and virulence in Candida albicans
-
Kadosh D, Johnson AD, (2001) Rfg1, a protein related to the Saccharomyces cerevisiae hypoxic regulator Rox1, controls filamentous growth and virulence in Candida albicans. Mol Cell Biol 21: 2496-2505.
-
(2001)
Mol Cell Biol
, vol.21
, pp. 2496-2505
-
-
Kadosh, D.1
Johnson, A.D.2
-
60
-
-
0344196904
-
SAM domains: uniform structure, diversity of function
-
Kim CA, Bowie JU, (2003) SAM domains: uniform structure, diversity of function. Trends Biochem Sci 28: 625-628.
-
(2003)
Trends Biochem Sci
, vol.28
, pp. 625-628
-
-
Kim, C.A.1
Bowie, J.U.2
-
61
-
-
0028331458
-
NHP6A and NHP6B, which encode HMG1-like proteins, are candidates for downstream components of the yeast SLT2 mitogen-activated protein kinase pathway
-
Costigan C, Kolodrubetz D, Snyder M, (1994) NHP6A and NHP6B, which encode HMG1-like proteins, are candidates for downstream components of the yeast SLT2 mitogen-activated protein kinase pathway. Mol Cell Biol 14: 2391-2403.
-
(1994)
Mol Cell Biol
, vol.14
, pp. 2391-2403
-
-
Costigan, C.1
Kolodrubetz, D.2
Snyder, M.3
-
62
-
-
77956848161
-
Chromatin-dependent binding of the S. cerevisiae HMGB protein Nhp6A affects nucleosome dynamics and transcription
-
Dowell NL, Sperling AS, Mason MJ, Johnson RC, (2010) Chromatin-dependent binding of the S. cerevisiae HMGB protein Nhp6A affects nucleosome dynamics and transcription. Genes Dev 24: 2031-2042.
-
(2010)
Genes Dev
, vol.24
, pp. 2031-2042
-
-
Dowell, N.L.1
Sperling, A.S.2
Mason, M.J.3
Johnson, R.C.4
-
63
-
-
0037464589
-
The genome sequence of the filamentous fungus Neurospora crassa
-
Galagan JE, Calvo SE, Borkovich KA, Selker EU, Read ND, et al. (2003) The genome sequence of the filamentous fungus Neurospora crassa. Nature 422: 859-868.
-
(2003)
Nature
, vol.422
, pp. 859-868
-
-
Galagan, J.E.1
Calvo, S.E.2
Borkovich, K.A.3
Selker, E.U.4
Read, N.D.5
-
64
-
-
70349900168
-
Functions and regulation of the Nox family in the filamentous fungus Podospora anserina: a new role in cellulose degradation
-
Brun S, Malagnac F, Bidard F, Lalucque H, Silar P, (2009) Functions and regulation of the Nox family in the filamentous fungus Podospora anserina: a new role in cellulose degradation. Mol Microbiol 74: 480-496.
-
(2009)
Mol Microbiol
, vol.74
, pp. 480-496
-
-
Brun, S.1
Malagnac, F.2
Bidard, F.3
Lalucque, H.4
Silar, P.5
-
65
-
-
79961038029
-
Identification and characterization of genes required for cell-to-cell fusion in Neurospora crassa
-
Fu C, Iyer P, Herkal A, Abdullah J, Stout A, et al. (2011) Identification and characterization of genes required for cell-to-cell fusion in Neurospora crassa. Eukaryot Cell 10: 1100-1109.
-
(2011)
Eukaryot Cell
, vol.10
, pp. 1100-1109
-
-
Fu, C.1
Iyer, P.2
Herkal, A.3
Abdullah, J.4
Stout, A.5
-
66
-
-
77956340808
-
Genes encoding a striatin-like protein (ham-3) and a forkhead associated protein (ham-4) are required for hyphal fusion in Neurospora crassa
-
Simonin AR, Rasmussen CG, Yang M, Glass NL, (2010) Genes encoding a striatin-like protein (ham-3) and a forkhead associated protein (ham-4) are required for hyphal fusion in Neurospora crassa. Fungal Genet Biol 47: 855-868.
-
(2010)
Fungal Genet Biol
, vol.47
, pp. 855-868
-
-
Simonin, A.R.1
Rasmussen, C.G.2
Yang, M.3
Glass, N.L.4
-
67
-
-
84862508569
-
A non-Mendelian MAPK-generated hereditary unit controlled by a second MAPK pathway in Podospora anserina
-
Lalucque H, Malagnac F, Brun S, Kicka S, Silar P, (2012) A non-Mendelian MAPK-generated hereditary unit controlled by a second MAPK pathway in Podospora anserina. Genetics 191: 419-433.
-
(2012)
Genetics
, vol.191
, pp. 419-433
-
-
Lalucque, H.1
Malagnac, F.2
Brun, S.3
Kicka, S.4
Silar, P.5
-
68
-
-
79960725294
-
Grafting as a method for studying development in the filamentous fungus Podospora anserina
-
Silar P, (2011) Grafting as a method for studying development in the filamentous fungus Podospora anserina. Fungal Biol 115: 793-802.
-
(2011)
Fungal Biol
, vol.115
, pp. 793-802
-
-
Silar, P.1
-
69
-
-
71549139484
-
Hyphal fusion
-
In: Borkovich KA, Ebbole DJ, editors. Washington, DC: ASM Press
-
Read ND, Fleissner A, Roca GM, Glass L, N. (2010) Hyphal fusion. In: Borkovich KA, Ebbole DJ, editors. Cellular and Molecular Biology of Filamentous Fungi. Washington, DC: ASM Press. pp. 260-273.
-
(2010)
Cellular and Molecular Biology of Filamentous Fungi
, pp. 260-273
-
-
Read, N.D.1
Fleissner, A.2
Roca, G.M.3
Glass, L.N.4
-
70
-
-
84861468929
-
Systematic deletion of homeobox genes in Podospora anserina uncovers their roles in shaping the fruiting body
-
Coppin E, Berteaux-Lecellier V, Bidard F, Brun S, Ruprich-Robert G, et al. (2012) Systematic deletion of homeobox genes in Podospora anserina uncovers their roles in shaping the fruiting body. PLoS One 7: e37488.
-
(2012)
PLoS One
, vol.7
-
-
Coppin, E.1
Berteaux-Lecellier, V.2
Bidard, F.3
Brun, S.4
Ruprich-Robert, G.5
-
71
-
-
0027440871
-
Deletion of the mating-type sequences in Podospora anserina abolishes mating without affecting vegetative functions and sexual differentiation
-
Coppin E, Arnaise S, Contamine V, Picard M, (1993) Deletion of the mating-type sequences in Podospora anserina abolishes mating without affecting vegetative functions and sexual differentiation. Mol Gen Genet 241: 409-414.
-
(1993)
Mol Gen Genet
, vol.241
, pp. 409-414
-
-
Coppin, E.1
Arnaise, S.2
Contamine, V.3
Picard, M.4
-
72
-
-
35748958728
-
IDC1, a pezizomycotina-specific gene that belongs to the PaMpk1 MAP kinase transduction cascade of the filamentous fungus Podospora anserina
-
Jamet-Vierny C, Debuchy R, Prigent M, Silar P, (2007) IDC1, a pezizomycotina-specific gene that belongs to the PaMpk1 MAP kinase transduction cascade of the filamentous fungus Podospora anserina. Fungal Genet Biol 44: 1219-1230.
-
(2007)
Fungal Genet Biol
, vol.44
, pp. 1219-1230
-
-
Jamet-Vierny, C.1
Debuchy, R.2
Prigent, M.3
Silar, P.4
-
73
-
-
79959612553
-
Genome-wide gene expression profiling of fertilization competent mycelium in opposite mating types in the heterothallic fungus Podospora anserina
-
Bidard F, Ait Benkhali J, Coppin E, Imbeaud S, Grognet P, et al. (2011) Genome-wide gene expression profiling of fertilization competent mycelium in opposite mating types in the heterothallic fungus Podospora anserina. PLoS One 6: e21476.
-
(2011)
PLoS One
, vol.6
-
-
Bidard, F.1
Ait Benkhali, J.2
Coppin, E.3
Imbeaud, S.4
Grognet, P.5
-
74
-
-
0026516216
-
Sequence analysis of the gene coding for glyceraldehyde-3-phosphate dehydrogenase (gpd) of Podospora anserina: use of homologous regulatory sequences to improve transformation efficiency
-
Ridder R, Osiewacz HD, (1992) Sequence analysis of the gene coding for glyceraldehyde-3-phosphate dehydrogenase (gpd) of Podospora anserina: use of homologous regulatory sequences to improve transformation efficiency. Curr Genet 21: 207-213.
-
(1992)
Curr Genet
, vol.21
, pp. 207-213
-
-
Ridder, R.1
Osiewacz, H.D.2
-
75
-
-
69049110950
-
Confidence interval or p-value?: part 4 of a series on evaluation of scientific publications
-
du Prel JB, Hommel G, Rohrig B, Blettner M, (2009) Confidence interval or p-value?: part 4 of a series on evaluation of scientific publications. Dtsch Arztebl Int 106: 335-339.
-
(2009)
Dtsch Arztebl Int
, vol.106
, pp. 335-339
-
-
du Prel, J.B.1
Hommel, G.2
Rohrig, B.3
Blettner, M.4
-
76
-
-
0032972509
-
PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization
-
Nakai K, Horton P, (1999) PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization. Trends Biochem Sci 24: 34-36.
-
(1999)
Trends Biochem Sci
, vol.24
, pp. 34-36
-
-
Nakai, K.1
Horton, P.2
-
77
-
-
0034130843
-
Co-expression of the mating-type genes involved in internuclear recognition is lethal in Podospora anserina
-
Coppin E, Debuchy R, (2000) Co-expression of the mating-type genes involved in internuclear recognition is lethal in Podospora anserina. Genetics 155: 657-669.
-
(2000)
Genetics
, vol.155
, pp. 657-669
-
-
Coppin, E.1
Debuchy, R.2
-
78
-
-
0028685490
-
Fitting a mixture model by expectation maximization to discover motifs in biopolymers
-
Bailey TL, Elkan C, (1994) Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc Int Conf Intell Syst Mol Biol 2: 28-36.
-
(1994)
Proc Int Conf Intell Syst Mol Biol
, vol.2
, pp. 28-36
-
-
Bailey, T.L.1
Elkan, C.2
-
79
-
-
0034282678
-
Sequence-specific high mobility group box factors recognize 10-12-base pair minor groove motifs
-
van Beest M, Dooijes D, van De Wetering M, Kjaerulff S, Bonvin A, et al. (2000) Sequence-specific high mobility group box factors recognize 10-12-base pair minor groove motifs. J Biol Chem 275: 27266-27273.
-
(2000)
J Biol Chem
, vol.275
, pp. 27266-27273
-
-
van Beest, M.1
Dooijes, D.2
van de Wetering, M.3
Kjaerulff, S.4
Bonvin, A.5
-
80
-
-
0034493510
-
A zinc-finger protein, Rst2p, regulates transcription of the fission yeast ste11(+) gene, which encodes a pivotal transcription factor for sexual development
-
Kunitomo H, Higuchi T, Iino Y, Yamamoto M, (2000) A zinc-finger protein, Rst2p, regulates transcription of the fission yeast ste11(+) gene, which encodes a pivotal transcription factor for sexual development. Mol Biol Cell 11: 3205-3217.
-
(2000)
Mol Biol Cell
, vol.11
, pp. 3205-3217
-
-
Kunitomo, H.1
Higuchi, T.2
Iino, Y.3
Yamamoto, M.4
-
81
-
-
0028225079
-
Mating pheromone-induced expression of the mat1-Pm gene of Schizosaccharomyces pombe: identification of signalling components and characterization of upstream controlling elements
-
Aono T, Yanai H, Miki F, Davey J, Shimoda C, (1994) Mating pheromone-induced expression of the mat1-Pm gene of Schizosaccharomyces pombe: identification of signalling components and characterization of upstream controlling elements. Yeast 10: 757-770.
-
(1994)
Yeast
, vol.10
, pp. 757-770
-
-
Aono, T.1
Yanai, H.2
Miki, F.3
Davey, J.4
Shimoda, C.5
-
82
-
-
33749173831
-
Evolution of alternative transcriptional circuits with identical logic
-
Tsong AE, Tuch BB, Li H, Johnson AD, (2006) Evolution of alternative transcriptional circuits with identical logic. Nature 443: 415-420.
-
(2006)
Nature
, vol.443
, pp. 415-420
-
-
Tsong, A.E.1
Tuch, B.B.2
Li, H.3
Johnson, A.D.4
-
83
-
-
40149098862
-
The evolution of combinatorial gene regulation in fungi
-
Tuch BB, Galgoczy DJ, Hernday AD, Li H, Johnson AD, (2008) The evolution of combinatorial gene regulation in fungi. PLoS Biol 6: e38.
-
(2008)
PLoS Biol
, vol.6
-
-
Tuch, B.B.1
Galgoczy, D.J.2
Hernday, A.D.3
Li, H.4
Johnson, A.D.5
-
84
-
-
40149109308
-
Evolutionary biology: genomic clues to original sex in fungi
-
Dyer PS, (2008) Evolutionary biology: genomic clues to original sex in fungi. Curr Biol 18: R207-R209.
-
(2008)
Curr Biol
, vol.18
-
-
Dyer, P.S.1
-
85
-
-
84880809112
-
-
In: Heitman J, Kronstad JW, Taylor JW, Casselton LA, editors. Sex in Fungi, molecular determination and evolutionary implications. Washington, DC: ASM Press
-
Tsong AE, Brian BT, Johnson AD (2007) Rewiring transcriptional circuitry: mating-type regulation in Saccharomyces cerevisiae and Candida albicans as a model for evolution. In: Heitman J, Kronstad JW, Taylor JW, Casselton LA, editors. Sex in Fungi, molecular determination and evolutionary implications. Washington, DC: ASM Press. pp. 75-89.
-
(2007)
Rewiring transcriptional circuitry: Mating-type regulation in Saccharomyces cerevisiae and Candida albicans as a model for evolution
, pp. 75-89
-
-
Tsong, A.E.1
Brian, B.T.2
Johnson, A.D.3
-
86
-
-
77950523174
-
Ste12 and Ste12-like proteins, fungal transcription factors regulating development and pathogenicity
-
Wong Sak Hoi J, Dumas B, (2010) Ste12 and Ste12-like proteins, fungal transcription factors regulating development and pathogenicity. Eukaryot Cell 9: 480-485.
-
(2010)
Eukaryot Cell
, vol.9
, pp. 480-485
-
-
Wong Sak Hoi, J.1
Dumas, B.2
-
87
-
-
16544368689
-
Deletion and complementation of the mating type (MAT) locus of the wheat head blight pathogen Gibberella zeae
-
Desjardins AE, Brown DW, Yun SH, Proctor RH, Lee T, et al. (2004) Deletion and complementation of the mating type (MAT) locus of the wheat head blight pathogen Gibberella zeae. Appl Environ Microbiol 70: 2437-2444.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 2437-2444
-
-
Desjardins, A.E.1
Brown, D.W.2
Yun, S.H.3
Proctor, R.H.4
Lee, T.5
-
88
-
-
0031961195
-
Characterization of mat A-2, mat A-3 and ΔmatA mating-type mutants of Neurospora crassa
-
Ferreira AV, An Z, Metzenberg RL, Glass NL, (1998) Characterization of mat A-2, mat A-3 and ΔmatA mating-type mutants of Neurospora crassa. Genetics 148: 1069-1079.
-
(1998)
Genetics
, vol.148
, pp. 1069-1079
-
-
Ferreira, A.V.1
An, Z.2
Metzenberg, R.L.3
Glass, N.L.4
-
89
-
-
13844309947
-
The function of the coding sequences for the putative pheromone precursors in Podospora anserina is restricted to fertilization
-
Coppin E, de Renty C, Debuchy R, (2005) The function of the coding sequences for the putative pheromone precursors in Podospora anserina is restricted to fertilization. Eukaryot Cell 4: 407-420.
-
(2005)
Eukaryot Cell
, vol.4
, pp. 407-420
-
-
Coppin, E.1
de Renty, C.2
Debuchy, R.3
-
90
-
-
1942421791
-
PaASK1, a mitogen-activated protein kinase kinase kinase that controls cell degeneration and cell differentiation in Podospora anserina
-
Kicka S, Silar P, (2004) PaASK1, a mitogen-activated protein kinase kinase kinase that controls cell degeneration and cell differentiation in Podospora anserina. Genetics 166: 1241-1252.
-
(2004)
Genetics
, vol.166
, pp. 1241-1252
-
-
Kicka, S.1
Silar, P.2
-
91
-
-
33748629940
-
A mitotically inheritable unit containing a MAP kinase module
-
Kicka S, Bonnet C, Sobering AK, Ganesan LP, Silar P, (2006) A mitotically inheritable unit containing a MAP kinase module. Proc Natl Acad Sci U S A 103: 13445-13450.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 13445-13450
-
-
Kicka, S.1
Bonnet, C.2
Sobering, A.K.3
Ganesan, L.P.4
Silar, P.5
-
92
-
-
14044279884
-
Constitutive activation of the fission yeast pheromone-responsive pathway induces ectopic meiosis and reveals ste11 as a mitogen-activated protein kinase target
-
Kjaerulff S, Lautrup-Larsen I, Truelsen S, Pedersen M, Nielsen O, (2005) Constitutive activation of the fission yeast pheromone-responsive pathway induces ectopic meiosis and reveals ste11 as a mitogen-activated protein kinase target. Mol Cell Biol 25: 2045-2059.
-
(2005)
Mol Cell Biol
, vol.25
, pp. 2045-2059
-
-
Kjaerulff, S.1
Lautrup-Larsen, I.2
Truelsen, S.3
Pedersen, M.4
Nielsen, O.5
-
93
-
-
77955349439
-
Dating the molecular clock in fungi - how close are we?
-
Berbee ML, Taylor JW, (2010) Dating the molecular clock in fungi- how close are we? Fungal Biol Rev 24: 1-16.
-
(2010)
Fungal Biol Rev
, vol.24
, pp. 1-16
-
-
Berbee, M.L.1
Taylor, J.W.2
-
94
-
-
0001363867
-
Contribution à l'étude génétique d'un ascomycète tatrasporé: Podospora anserina
-
Rizet G, Engelmann C, (1949) Contribution à l'étude génétique d'un ascomycète tatrasporé: Podospora anserina. Rhem Rv Cytol Biol Veg 11: 201-304.
-
(1949)
Rhem Rv Cytol Biol Veg
, vol.11
, pp. 201-304
-
-
Rizet, G.1
Engelmann, C.2
-
95
-
-
0001909765
-
Les phénomènes de barrage chez Podospora anserina. I. Analyse génétique des barrages entre souches S and s
-
Rizet G, (1952) Les phénomènes de barrage chez Podospora anserina. I. Analyse génétique des barrages entre souches S and s. Rev Cytol Biol Veg 13: 51-92.
-
(1952)
Rev Cytol Biol Veg
, vol.13
, pp. 51-92
-
-
Rizet, G.1
-
96
-
-
84858077472
-
The Pfam protein families database
-
Punta M, Coggill PC, Eberhardt RY, Mistry J, Tate J, et al. (2012) The Pfam protein families database. Nucleic Acids Res 40: D290-D301.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Punta, M.1
Coggill, P.C.2
Eberhardt, R.Y.3
Mistry, J.4
Tate, J.5
-
97
-
-
33745924142
-
A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors
-
Colot HV, Park G, Turner GE, Ringelberg C, Crew CM, et al. (2006) A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors. Proc Natl Acad Sci U S A 103: 10352-10357.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 10352-10357
-
-
Colot, H.V.1
Park, G.2
Turner, G.E.3
Ringelberg, C.4
Crew, C.M.5
-
98
-
-
41149088659
-
Gene deletion and allelic replacement in the filamentous fungus Podospora anserina
-
El-Khoury R, Sellem CH, Coppin E, Boivin A, Maas MF, et al. (2008) Gene deletion and allelic replacement in the filamentous fungus Podospora anserina. Curr Genet 53: 249-258.
-
(2008)
Curr Genet
, vol.53
, pp. 249-258
-
-
El-Khoury, R.1
Sellem, C.H.2
Coppin, E.3
Boivin, A.4
Maas, M.F.5
-
99
-
-
0002584062
-
Two new easy to use vectors for transformations
-
Silar P, (1995) Two new easy to use vectors for transformations. Fungal Genet Newslett 42: 73.
-
(1995)
Fungal Genet Newslett
, vol.42
, pp. 73
-
-
Silar, P.1
-
100
-
-
0037129827
-
Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
-
Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, et al. (2002) Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol 3: RESEARCH0034.
-
(2002)
Genome Biol
, vol.3
-
-
Vandesompele, J.1
de Preter, K.2
Pattyn, F.3
Poppe, B.4
van Roy, N.5
-
101
-
-
3442876969
-
Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets
-
Andersen CL, Jensen JL, Orntoft TF, (2004) Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Res 64: 5245-5250.
-
(2004)
Cancer Res
, vol.64
, pp. 5245-5250
-
-
Andersen, C.L.1
Jensen, J.L.2
Orntoft, T.F.3
-
102
-
-
0036581160
-
Relative expression software tool (REST) for group-wise comparison and statistical analysis of relative expression results in real-time PCR
-
Pfaffl MW, Horgan GW, Dempfle L, (2002) Relative expression software tool (REST) for group-wise comparison and statistical analysis of relative expression results in real-time PCR. Nucleic Acids Res 30: e36.
-
(2002)
Nucleic Acids Res
, vol.30
-
-
Pfaffl, M.W.1
Horgan, G.W.2
Dempfle, L.3
-
103
-
-
0032535646
-
Labeling efficiency of oligonucleotides by T4 polynucleotide kinase depends on 5′-nucleotide
-
van Houten V, Denkers F, van Dijk M, van den Brekel M, Brakenhoff R, (1998) Labeling efficiency of oligonucleotides by T4 polynucleotide kinase depends on 5′-nucleotide. Anal Biochem 265: 386-389.
-
(1998)
Anal Biochem
, vol.265
, pp. 386-389
-
-
van Houten, V.1
Denkers, F.2
van Dijk, M.3
van den Brekel, M.4
Brakenhoff, R.5
-
104
-
-
78650788900
-
Principles and problems of the electrophoretic mobility shift assay
-
Holden NS, Tacon CE, (2011) Principles and problems of the electrophoretic mobility shift assay. J Pharmacol Toxicol Methods 63: 7-14.
-
(2011)
J Pharmacol Toxicol Methods
, vol.63
, pp. 7-14
-
-
Holden, N.S.1
Tacon, C.E.2
-
105
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, et al. (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23: 2947-2948.
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
-
106
-
-
65449188232
-
Jalview Version 2-a multiple sequence alignment editor and analysis workbench
-
Waterhouse AM, Procter JB, Martin DM, Clamp M, Barton GJ, (2009) Jalview Version 2-a multiple sequence alignment editor and analysis workbench. Bioinformatics 25: 1189-1191.
-
(2009)
Bioinformatics
, vol.25
, pp. 1189-1191
-
-
Waterhouse, A.M.1
Procter, J.B.2
Martin, D.M.3
Clamp, M.4
Barton, G.J.5
-
107
-
-
45849154166
-
An improved general amino acid replacement matrix
-
Le SQ, Gascuel O, (2008) An improved general amino acid replacement matrix. Mol Biol Evol 25: 1307-1320.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 1307-1320
-
-
Le, S.Q.1
Gascuel, O.2
-
108
-
-
0037314097
-
Matrix2png: a utility for visualizing matrix data
-
Pavlidis P, Noble WS, (2003) Matrix2png: a utility for visualizing matrix data. Bioinformatics 19: 295-296.
-
(2003)
Bioinformatics
, vol.19
, pp. 295-296
-
-
Pavlidis, P.1
Noble, W.S.2
-
109
-
-
0028235738
-
Functional analyses of the Neurospora crassa MT a-1 mating type polypeptide
-
Philley ML, Staben C, (1994) Functional analyses of the Neurospora crassa MT a-1 mating type polypeptide. Genetics 137: 715-722.
-
(1994)
Genetics
, vol.137
, pp. 715-722
-
-
Philley, M.L.1
Staben, C.2
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