메뉴 건너뛰기




Volumn 5, Issue 12, 2010, Pages

Tracing the origin of the fungal α1 domain places its ancestor in the HMG-box superfamily: Implication for fungal mating-type evolution

Author keywords

[No Author keywords available]

Indexed keywords

DNA BINDING PROTEIN; FUNGAL ALPHA1 PROTEIN; HIGH MOBILITY GROUP PROTEIN; PROTEIN MATALPHA1P; SACCHAROMYCES CEREVISIAE PROTEIN; UNCLASSIFIED DRUG; FUNGAL PROTEIN;

EID: 78650097545     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0015199     Document Type: Article
Times cited : (75)

References (76)
  • 1
    • 0025378862 scopus 로고
    • Mating type and mating strategies in Neurospora
    • Metzenberg RL, Glass NL (1990) Mating type and mating strategies in Neurospora. Bioessays 12: 53-59.
    • (1990) Bioessays , vol.12 , pp. 53-59
    • Metzenberg, R.L.1    Glass, N.L.2
  • 2
    • 78649655179 scopus 로고    scopus 로고
    • Mating and sexual morphogenesis in basidiomycete fungi
    • In: Borkovich KA, Ebbole DJ, eds, Washington, DC: ASM Press
    • Casselton LA, Feldbrügge M (2010) Mating and sexual morphogenesis in basidiomycete fungi. In: Borkovich KA, Ebbole DJ, eds. Cellular and Molecular Biology of Filamentous Fungi. Washington, DC: ASM Press. pp 536-555.
    • (2010) Cellular and Molecular Biology of Filamentous Fungi , pp. 536-555
    • Casselton, L.A.1    Feldbrügge, M.2
  • 4
    • 77953748116 scopus 로고    scopus 로고
    • Mating systems and sexual morphogenesis in Ascomycetes
    • In: Borkovich KA, Ebbole DJ, eds, Washington, DC: ASM Press
    • Debuchy R, Berteaux-Lecellier V, Silar P (2010) Mating systems and sexual morphogenesis in Ascomycetes. In: Borkovich KA, Ebbole DJ, eds. Cellular and Molecular Biology of Filamentous Fungi. Washington, DC: ASM Press. pp 501-535.
    • (2010) Cellular and Molecular Biology of Filamentous Fungi , pp. 501-535
    • Debuchy, R.1    Berteaux-Lecellier, V.2    Silar, P.3
  • 5
    • 0019851052 scopus 로고
    • The sequence of the DNAs coding for the mating-type loci of Saccharomyces cerevisiae
    • Astell CR, Ahlstrom-Jonasson L, Smith M, Tatchell K, Nasmyth KA, et al. (1981) The sequence of the DNAs coding for the mating-type loci of Saccharomyces cerevisiae. Cell 27: 15-23.
    • (1981) Cell , vol.27 , pp. 15-23
    • Astell, C.R.1    Ahlstrom-Jonasson, L.2    Smith, M.3    Tatchell, K.4    Nasmyth, K.A.5
  • 7
    • 0034513749 scopus 로고    scopus 로고
    • Proposed nomenclature for mating type genes of filamentous ascomycetes
    • Turgeon BG, Yoder OC (2000) Proposed nomenclature for mating type genes of filamentous ascomycetes. Fungal Genet Biol 31: 1-5.
    • (2000) Fungal Genet Biol , vol.31 , pp. 1-5
    • Turgeon, B.G.1    Yoder, O.C.2
  • 8
    • 0024004923 scopus 로고
    • Four mating-type genes control sexual differentiation in the fission yeast
    • Kelly M, Burke J, Smith M, Klar A, Beach D (1988) Four mating-type genes control sexual differentiation in the fission yeast. EMBO J 7: 1537-1547.
    • (1988) EMBO J , vol.7 , pp. 1537-1547
    • Kelly, M.1    Burke, J.2    Smith, M.3    Klar, A.4    Beach, D.5
  • 9
    • 0030451272 scopus 로고    scopus 로고
    • The Schizosaccharomyces pombe map1 gene encodes an SRF/MCM1-related protein required for P-cell specific gene expression
    • Nielsen O, Friis T, Kjaerulff S (1996) The Schizosaccharomyces pombe map1 gene encodes an SRF/MCM1-related protein required for P-cell specific gene expression. Mol Gen Genet 253: 387-392.
    • (1996) Mol Gen Genet , vol.253 , pp. 387-392
    • Nielsen, O.1    Friis, T.2    Kjaerulff, S.3
  • 10
  • 11
    • 48949104028 scopus 로고    scopus 로고
    • Rewiring transcriptional circuitry: Mating-type regulation in Saccharomyces cerevisiae and Candida albicans as a model for evolution
    • In: Heitman J, Kronstad JW, Taylor JW, Casselton LA, eds, Washington, DC: ASM Press
    • Tsong AE, Brian BT, Johnson AD (2007) Rewiring transcriptional circuitry: mating-type regulation in Saccharomyces cerevisiae and Candida albicans as a model for evolution. In: Heitman J, Kronstad JW, Taylor JW, Casselton LA, eds. Sex in Fungi, molecular determination and evolutionary implications. Washington, DC: ASM Press. pp 75-89.
    • (2007) Sex in Fungi, molecular determination and evolutionary implications , pp. 75-89
    • Tsong, A.E.1    Brian, B.T.2    Johnson, A.D.3
  • 12
    • 0027330971 scopus 로고
    • Transcription of alpha-specific genes in Saccharomyces cerevisiae: DNA sequence requirements for activity of the coregulator alpha 1
    • Hagen DC, Bruhn L, Westby CA, Sprague GF, Jr. (1993) Transcription of alpha-specific genes in Saccharomyces cerevisiae: DNA sequence requirements for activity of the coregulator alpha 1. Mol Cell Biol 13: 6866-6875.
    • (1993) Mol Cell Biol , vol.13 , pp. 6866-6875
    • Hagen, D.C.1    Bruhn, L.2    Westby, C.A.3    Sprague Jr., G.F.4
  • 13
    • 0027209343 scopus 로고
    • Coupling of cell identity to signal response in yeast: Interaction between the alpha 1 and STE12 proteins
    • Yuan YO, Stroke IL, Fields S (1993) Coupling of cell identity to signal response in yeast: interaction between the alpha 1 and STE12 proteins. Genes Dev 7: 1584-1597.
    • (1993) Genes Dev , vol.7 , pp. 1584-1597
    • Yuan, Y.O.1    Stroke, I.L.2    Fields, S.3
  • 14
    • 77955485845 scopus 로고    scopus 로고
    • Degradation of the Saccharomyces cerevisiae mating-type regulator alpha1: Genetic dissection of cis-determinants and transacting pathways
    • Nixon CE, Wilcox AJ, Laney JD (2010) Degradation of the Saccharomyces cerevisiae mating-type regulator alpha1: genetic dissection of cis-determinants and transacting pathways. Genetics 185: 497-511.
    • (2010) Genetics , vol.185 , pp. 497-511
    • Nixon, C.E.1    Wilcox, A.J.2    Laney, J.D.3
  • 15
    • 46049087782 scopus 로고    scopus 로고
    • The TRANSFAC project as an example of framework technology that supports the analysis of genomic regulation
    • Wingender E (2008) The TRANSFAC project as an example of framework technology that supports the analysis of genomic regulation. Brief Bioinform 9: 326-332.
    • (2008) Brief Bioinform , vol.9 , pp. 326-332
    • Wingender, E.1
  • 17
    • 38049115135 scopus 로고    scopus 로고
    • Identification of the sex genes in an early diverged fungus
    • Idnurm A, Walton FJ, Floyd A, Heitman J (2008) Identification of the sex genes in an early diverged fungus. Nature 451: 193-196.
    • (2008) Nature , vol.451 , pp. 193-196
    • Idnurm, A.1    Walton, F.J.2    Floyd, A.3    Heitman, J.4
  • 18
    • 13244255415 scopus 로고    scopus 로고
    • MUSCLE: A multiple sequence alignment method with reduced time and space complexity
    • Edgar RC (2004) MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5: 113.
    • (2004) BMC Bioinformatics , vol.5 , pp. 113
    • Edgar, R.C.1
  • 20
    • 0026719256 scopus 로고
    • A conserved family of genes related to the testis determining gene, SRY
    • Denny P, Swift S, Brand N, Dabhade N, Barton P, et al. (1992) A conserved family of genes related to the testis determining gene, SRY. Nucleic Acids Res 20: 2887.
    • (1992) Nucleic Acids Res , vol.20 , pp. 2887
    • Denny, P.1    Swift, S.2    Brand, N.3    Dabhade, N.4    Barton, P.5
  • 21
    • 67849119587 scopus 로고    scopus 로고
    • COMPASS server for homology detection: Improved statistical accuracy, speed and functionality
    • Sadreyev RI, Tang M, Kim BH, Grishin NV (2009) COMPASS server for homology detection: improved statistical accuracy, speed and functionality. Nucleic Acids Res 37: W90-94.
    • (2009) Nucleic Acids Res , vol.37
    • Sadreyev, R.I.1    Tang, M.2    Kim, B.H.3    Grishin, N.V.4
  • 22
    • 8744259751 scopus 로고    scopus 로고
    • Reconstruction of ancestral protein sequences and its applications
    • Cai W, Pei J, Grishin NV (2004) Reconstruction of ancestral protein sequences and its applications. BMC Evol Biol 4: 33.
    • (2004) BMC Evol Biol , vol.4 , pp. 33
    • Cai, W.1    Pei, J.2    Grishin, N.V.3
  • 23
    • 18744382506 scopus 로고    scopus 로고
    • ProtTest: Selection of best-fit models of protein evolution
    • Abascal F, Zardoya R, Posada D (2005) ProtTest: selection of best-fit models of protein evolution. Bioinformatics 21: 2104-2105.
    • (2005) Bioinformatics , vol.21 , pp. 2104-2105
    • Abascal, F.1    Zardoya, R.2    Posada, D.3
  • 24
    • 0024307824 scopus 로고
    • Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea
    • Kishino H, Hasegawa M (1989) Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea. J Mol Evol 29: 170-179.
    • (1989) J Mol Evol , vol.29 , pp. 170-179
    • Kishino, H.1    Hasegawa, M.2
  • 25
    • 0032766857 scopus 로고    scopus 로고
    • Multiple comparisons of log-likelihoods with applications to phylogenetic inference
    • Shimodaira H, Hasegawa M (1999) Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol Biol Evol 16: 1114-1116.
    • (1999) Mol Biol Evol , vol.16 , pp. 1114-1116
    • Shimodaira, H.1    Hasegawa, M.2
  • 26
    • 0032900464 scopus 로고    scopus 로고
    • Diversification pattern of the HMG and SOX family members during evolution
    • Soullier S, Jay P, Poulat F, Vanacker JM, Berta P, et al. (1999) Diversification pattern of the HMG and SOX family members during evolution. J Mol Evol 48: 517-527.
    • (1999) J Mol Evol , vol.48 , pp. 517-527
    • Soullier, S.1    Jay, P.2    Poulat, F.3    Vanacker, J.M.4    Berta, P.5
  • 27
    • 48449106792 scopus 로고    scopus 로고
    • The Jpred 3 secondary structure prediction server
    • Cole C, Barber JD, Barton GJ (2008) The Jpred 3 secondary structure prediction server. Nucleic Acids Res 36: W197-201.
    • (2008) Nucleic Acids Res , vol.36
    • Cole, C.1    Barber, J.D.2    Barton, G.J.3
  • 28
    • 0042161878 scopus 로고    scopus 로고
    • Crystal structure of a POU/HMG/DNA ternary complex suggests differential assembly of Oct4 and Sox2 on two enhancers
    • Remenyi A, Lins K, Nissen LJ, Reinbold R, Scholer HR, et al. (2003) Crystal structure of a POU/HMG/DNA ternary complex suggests differential assembly of Oct4 and Sox2 on two enhancers. Genes Dev 17: 2048-2059.
    • (2003) Genes Dev , vol.17 , pp. 2048-2059
    • Remenyi, A.1    Lins, K.2    Nissen, L.J.3    Reinbold, R.4    Scholer, H.R.5
  • 29
    • 0027414641 scopus 로고
    • Structure of the HMG box motif in the B-domain of HMG1
    • Weir HM, Kraulis PJ, Hill CS, Raine AR, Laue ED, et al. (1993) Structure of the HMG box motif in the B-domain of HMG1. EMBO J 12: 1311-1319.
    • (1993) EMBO J , vol.12 , pp. 1311-1319
    • Weir, H.M.1    Kraulis, P.J.2    Hill, C.S.3    Raine, A.R.4    Laue, E.D.5
  • 30
    • 0029075461 scopus 로고
    • Molecular basis of human 46X,Y sex reversal revealed from the three-dimensional solution structure of the human SRY-DNA complex
    • Werner MH, Huth JR, Gronenborn AM, Clore GM (1995) Molecular basis of human 46X,Y sex reversal revealed from the three-dimensional solution structure of the human SRY-DNA complex. Cell 81: 705-714.
    • (1995) Cell , vol.81 , pp. 705-714
    • Werner, M.H.1    Huth, J.R.2    Gronenborn, A.M.3    Clore, G.M.4
  • 31
    • 63849246525 scopus 로고    scopus 로고
    • Protein structure prediction on the Web: A case study using the Phyre server
    • Kelley LA, Sternberg MJ (2009) Protein structure prediction on the Web: a case study using the Phyre server. Nat Protoc 4: 363-371.
    • (2009) Nat Protoc , vol.4 , pp. 363-371
    • Kelley, L.A.1    Sternberg, M.J.2
  • 32
    • 74249106219 scopus 로고    scopus 로고
    • I-TASSER: Fully automated protein structure prediction in CASP8
    • Zhang Y (2009) I-TASSER: fully automated protein structure prediction in CASP8. Proteins 77 Suppl 9: 100-113.
    • (2009) Proteins , vol.77 , Issue.SUPPL 9 , pp. 100-113
    • Zhang, Y.1
  • 34
    • 0035967880 scopus 로고    scopus 로고
    • FUGUE: Sequence-structure homology recognition using environment-specific substitution tables and structuredependent gap penalties
    • Shi J, Blundell TL, Mizuguchi K (2001) FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structuredependent gap penalties. J Mol Biol 310: 243-257.
    • (2001) J Mol Biol , vol.310 , pp. 243-257
    • Shi, J.1    Blundell, T.L.2    Mizuguchi, K.3
  • 35
    • 0346462991 scopus 로고    scopus 로고
    • Molecular basis for synergistic transcriptional activation by Oct1 and Sox2 revealed from the solution structure of the 42-kDa Oct1.Sox2.Hoxb1-DNA ternary transcription factor complex
    • Williams DC, Jr., Cai M, Clore GM (2004) Molecular basis for synergistic transcriptional activation by Oct1 and Sox2 revealed from the solution structure of the 42-kDa Oct1.Sox2.Hoxb1-DNA ternary transcription factor complex. J Biol Chem 279: 1449-1457.
    • (2004) J Biol Chem , vol.279 , pp. 1449-1457
    • Williams Jr., D.C.1    Cai, M.2    Clore, G.M.3
  • 36
    • 0028235738 scopus 로고
    • Functional analyses of the Neurospora crassa MT a-1 mating type polypeptide
    • Philley ML, Staben C (1994) Functional analyses of the Neurospora crassa MT a-1 mating type polypeptide. Genetics 137: 715-722.
    • (1994) Genetics , vol.137 , pp. 715-722
    • Philley, M.L.1    Staben, C.2
  • 38
    • 0029131298 scopus 로고
    • Structural basis for DNA bending by the architectural transcription factor LEF-1
    • Love JJ, Li X, Case DA, Giese K, Grosschedl R, et al. (1995) Structural basis for DNA bending by the architectural transcription factor LEF-1. Nature 376: 791-795.
    • (1995) Nature , vol.376 , pp. 791-795
    • Love, J.J.1    Li, X.2    Case, D.A.3    Giese, K.4    Grosschedl, R.5
  • 39
    • 0026019629 scopus 로고
    • Identification and cloning of TCF-1, a T lymphocyte-specific transcription factor containing a sequence-specific HMG box
    • van de Wetering M, Oosterwegel M, Dooijes D, Clevers H (1991) Identification and cloning of TCF-1, a T lymphocyte-specific transcription factor containing a sequence-specific HMG box. EMBO J 10: 123-132.
    • (1991) EMBO J , vol.10 , pp. 123-132
    • van de Wetering, M.1    Oosterwegel, M.2    Dooijes, D.3    Clevers, H.4
  • 40
    • 33747839468 scopus 로고    scopus 로고
    • ScanProsite: Detection of PROSITE signature matches and ProRuleassociated functional and structural residues in proteins
    • de Castro E, Sigrist CJ, Gattiker A, Bulliard V, Langendijk-Genevaux PS, et al. (2006) ScanProsite: detection of PROSITE signature matches and ProRuleassociated functional and structural residues in proteins. Nucleic Acids Res 34: W362-365.
    • (2006) Nucleic Acids Res , vol.34
    • de Castro, E.1    Sigrist, C.J.2    Gattiker, A.3    Bulliard, V.4    Langendijk-Genevaux, P.S.5
  • 41
    • 34447253558 scopus 로고    scopus 로고
    • Mating-type loci of heterothallic Diaporthe spp.: Homologous genes are present in opposite mating-types
    • Kanematsu S, Adachi Y, Ito T (2007) Mating-type loci of heterothallic Diaporthe spp.: homologous genes are present in opposite mating-types. Curr Genet 52: 11-22.
    • (2007) Curr Genet , vol.52 , pp. 11-22
    • Kanematsu, S.1    Adachi, Y.2    Ito, T.3
  • 42
    • 0035571365 scopus 로고    scopus 로고
    • Analysis of mating-type genes in the chestnut blight fungus, Cryphonectria parasitica
    • McGuire IC, Marra RE, Turgeon BG, Milgroom MG (2001) Analysis of mating-type genes in the chestnut blight fungus, Cryphonectria parasitica. Fungal Genet Biol 34: 131-144.
    • (2001) Fungal Genet Biol , vol.34 , pp. 131-144
    • McGuire, I.C.1    Marra, R.E.2    Turgeon, B.G.3    Milgroom, M.G.4
  • 43
    • 33846084519 scopus 로고    scopus 로고
    • Mating-Type Structure, Evolution and Function in Euascomycetes
    • In: Kües U, Fischer R, eds, 2 ed. BerlinHeidelberg: Springer-Verlag
    • Debuchy R, Turgeon BG (2006) Mating-Type Structure, Evolution and Function in Euascomycetes. In: Kües U, Fischer R, eds. The Mycota I. 2 ed. BerlinHeidelberg: Springer-Verlag. pp 293-323.
    • (2006) The Mycota I , pp. 293-323
    • Debuchy, R.1    Turgeon, B.G.2
  • 44
    • 38849156753 scopus 로고    scopus 로고
    • Cochliobolus and Podospora: Mechanism of sex determination and the evolution of reproductive lifestyle
    • In: Heitman J, Kronstad JW, Taylor JW, Casselton LA, eds, Washington, DC: ASM Press
    • Turgeon BG, Debuchy R (2007) Cochliobolus and Podospora: mechanism of sex determination and the evolution of reproductive lifestyle. In: Heitman J, Kronstad JW, Taylor JW, Casselton LA, eds. Sex in Fungi, molecular determination and evolutionary implications. Washington, DC: ASM Press. pp 93-121.
    • (2007) Sex in Fungi, molecular determination and evolutionary implications , pp. 93-121
    • Turgeon, B.G.1    Debuchy, R.2
  • 45
    • 0030031118 scopus 로고    scopus 로고
    • The molecular nature of mutations in the mt A-1 gene of the Neurospora crassa A idiomorph and their relation to mating-type function
    • Saupe SJ, Stenberg L, Shiu KT, Griffiths AJ, Glass L, N (1996) The molecular nature of mutations in the mt A-1 gene of the Neurospora crassa A idiomorph and their relation to mating-type function. Mol Gen Genet 250: 115-122.
    • (1996) Mol Gen Genet , vol.250 , pp. 115-122
    • Saupe, S.J.1    Stenberg, L.2    Shiu, K.T.3    Griffiths, A.J.4    Glass, L.N.5
  • 47
    • 48949097880 scopus 로고    scopus 로고
    • Fungal sex genes-searching for the ancestors
    • Casselton LA (2008) Fungal sex genes-searching for the ancestors. Bioessays 30: 711-714.
    • (2008) Bioessays , vol.30 , pp. 711-714
    • Casselton, L.A.1
  • 48
    • 40149109308 scopus 로고    scopus 로고
    • Evolutionary biology: Genomic clues to original sex in fungi
    • Dyer PS (2008) Evolutionary biology: genomic clues to original sex in fungi. Curr Biol 18: R207-R209.
    • (2008) Curr Biol , vol.18
    • Dyer, P.S.1
  • 50
    • 2342553173 scopus 로고    scopus 로고
    • Synteny in toxigenic Fusarium species: The fumosin gene cluster and the mating type region as examples
    • Waalwijk C, van der Lee T, de Vries I, Hesselink T, Arts J, et al. (2004) Synteny in toxigenic Fusarium species: the fumosin gene cluster and the mating type region as examples. Europ J Plant Pathol 110: 533-544.
    • (2004) Europ J Plant Pathol , vol.110 , pp. 533-544
    • Waalwijk, C.1    van der Lee, T.2    de Vries, I.3    Hesselink, T.4    Arts, J.5
  • 51
    • 0035936144 scopus 로고    scopus 로고
    • Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi
    • Katinka MD, Duprat S, Cornillot E, Metenier G, Thomarat F, et al. (2001) Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi. Nature 414: 450-453.
    • (2001) Nature , vol.414 , pp. 450-453
    • Katinka, M.D.1    Duprat, S.2    Cornillot, E.3    Metenier, G.4    Thomarat, F.5
  • 52
    • 77649130916 scopus 로고    scopus 로고
    • FUNGIpath: A tool to assess fungal metabolic pathways predicted by orthology
    • Grossetete S, Labedan B, Lespinet O (2010) FUNGIpath: a tool to assess fungal metabolic pathways predicted by orthology. BMC Genomics 11: 81.
    • (2010) BMC Genomics , vol.11 , pp. 81
    • Grossetete, S.1    Labedan, B.2    Lespinet, O.3
  • 53
    • 77956297242 scopus 로고    scopus 로고
    • Evolution of the sex-related locus and genomic features shared in microsporidia and fungi
    • Lee SC, Corradi N, Doan S, Dietrich FS, Keeling PJ, et al. (2010) Evolution of the sex-related locus and genomic features shared in microsporidia and fungi. PLoS One 5: e10539.
    • (2010) PLoS One , vol.5
    • Lee, S.C.1    Corradi, N.2    Doan, S.3    Dietrich, F.S.4    Keeling, P.J.5
  • 54
    • 33749173831 scopus 로고    scopus 로고
    • Evolution of alternative transcriptional circuits with identical logic
    • Tsong AE, Tuch BB, Li H, Johnson AD (2006) Evolution of alternative transcriptional circuits with identical logic. Nature 443: 415-420.
    • (2006) Nature , vol.443 , pp. 415-420
    • Tsong, A.E.1    Tuch, B.B.2    Li, H.3    Johnson, A.D.4
  • 55
    • 0035783063 scopus 로고    scopus 로고
    • Fold change in evolution of protein structures
    • Grishin NV (2001) Fold change in evolution of protein structures. J Struct Biol 134: 167-185.
    • (2001) J Struct Biol , vol.134 , pp. 167-185
    • Grishin, N.V.1
  • 56
    • 0019332167 scopus 로고
    • How different amino acid sequences determine similar protein structures: The structure and evolutionary dynamics of the globins
    • Lesk AM, Chothia C (1980) How different amino acid sequences determine similar protein structures: the structure and evolutionary dynamics of the globins. J Mol Biol 136: 225-270.
    • (1980) J Mol Biol , vol.136 , pp. 225-270
    • Lesk, A.M.1    Chothia, C.2
  • 57
    • 77949348597 scopus 로고    scopus 로고
    • Quantifying the evolutionary divergence of protein structures: The role of function change and function conservation
    • Pascual-Garcia A, Abia D, Mendez R, Nido GS, Bastolla U. Quantifying the evolutionary divergence of protein structures: the role of function change and function conservation. Proteins 78: 181-196.
    • Proteins , vol.78 , pp. 181-196
    • Pascual-Garcia, A.1    Abia, D.2    Mendez, R.3    Nido, G.S.4    Bastolla, U.5
  • 58
    • 33747818327 scopus 로고    scopus 로고
    • Kalign, Kalignvu and Mumsa: Web servers for multiple sequence alignment
    • Lassmann T, Sonnhammer EL (2006) Kalign, Kalignvu and Mumsa: web servers for multiple sequence alignment. Nucleic Acids Res 34: W596-599.
    • (2006) Nucleic Acids Res , vol.34
    • Lassmann, T.1    Sonnhammer, E.L.2
  • 59
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.4    Zhang, Z.5
  • 60
    • 13444259388 scopus 로고    scopus 로고
    • TREEFINDER: A powerful graphical analysis environment for molecular phylogenetics
    • Jobb G, von Haeseler A, Strimmer K (2004) TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics. BMC Evol Biol 4: 18.
    • (2004) BMC Evol Biol , vol.4 , pp. 18
    • Jobb, G.1    von Haeseler, A.2    Strimmer, K.3
  • 61
    • 0030203863 scopus 로고    scopus 로고
    • TreeView: An application to display phylogenetic trees on personal computers
    • Page RD (1996) TreeView: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12: 357-358.
    • (1996) Comput Appl Biosci , vol.12 , pp. 357-358
    • Page, R.D.1
  • 62
    • 41049111540 scopus 로고    scopus 로고
    • Inferring confidence sets of possibly misspecified gene trees
    • Strimmer K, Rambaut A (2002) Inferring confidence sets of possibly misspecified gene trees. Proc Biol Sci 269: 137-142.
    • (2002) Proc Biol Sci , vol.269 , pp. 137-142
    • Strimmer, K.1    Rambaut, A.2
  • 65
    • 66649105285 scopus 로고    scopus 로고
    • Evolution of pathogenicity and sexual reproduction in eight Candida genomes
    • Butler G, Rasmussen MD, Lin MF, Santos MA, Sakthikumar S, et al. (2009) Evolution of pathogenicity and sexual reproduction in eight Candida genomes. Nature 459: 657-662.
    • (2009) Nature , vol.459 , pp. 657-662
    • Butler, G.1    Rasmussen, M.D.2    Lin, M.F.3    Santos, M.A.4    Sakthikumar, S.5
  • 67
    • 45849154166 scopus 로고    scopus 로고
    • An improved general amino acid replacement matrix
    • Le SQ, Gascuel O (2008) An improved general amino acid replacement matrix. Mol Biol Evol 25: 1307-1320.
    • (2008) Mol Biol Evol , vol.25 , pp. 1307-1320
    • Le, S.Q.1    Gascuel, O.2
  • 68
    • 0031716973 scopus 로고    scopus 로고
    • Single mating type-specific genes and their 39 UTRs control mating and fertility in Cochliobolus heterostrophus
    • Wirsel S, Horwitz B, Yamaguchi K, Yoder OC, Turgeon BG (1998) Single mating type-specific genes and their 39 UTRs control mating and fertility in Cochliobolus heterostrophus. Mol Gen Genet 259: 272-281.
    • (1998) Mol Gen Genet , vol.259 , pp. 272-281
    • Wirsel, S.1    Horwitz, B.2    Yamaguchi, K.3    Yoder, O.C.4    Turgeon, B.G.5
  • 69
    • 0041974799 scopus 로고    scopus 로고
    • Characterisation of the mating-type locus of the plant pathogenic ascomycete Leptosphaeria maculans
    • Cozijnsen AJ, Howlett BJ (2003) Characterisation of the mating-type locus of the plant pathogenic ascomycete Leptosphaeria maculans. Curr Genet 43: 351-357.
    • (2003) Curr Genet , vol.43 , pp. 351-357
    • Cozijnsen, A.J.1    Howlett, B.J.2
  • 70
    • 0036343102 scopus 로고    scopus 로고
    • Isolation and characterization of the mating-type idiomorphs from the wheat septoria leaf blotch fungus Mycosphaerella graminicola
    • Waalwijk C, Mendes O, Verstappen EC, de Waard MA, Kema GH (2002) Isolation and characterization of the mating-type idiomorphs from the wheat septoria leaf blotch fungus Mycosphaerella graminicola. Fungal Genet Biol 35: 277-286.
    • (2002) Fungal Genet Biol , vol.35 , pp. 277-286
    • Waalwijk, C.1    Mendes, O.2    Verstappen, E.C.3    de Waard, M.A.4    Kema, G.H.5
  • 71
    • 34249682649 scopus 로고    scopus 로고
    • DNA sequence characterization and molecular evolution of MAT1 and MAT2 mating-type loci of the self-compatible ascomycete mold Neosartorya fischeri
    • Rydholm C, Dyer PS, Lutzoni F (2007) DNA sequence characterization and molecular evolution of MAT1 and MAT2 mating-type loci of the self-compatible ascomycete mold Neosartorya fischeri. Eukaryot Cell 6: 868-874.
    • (2007) Eukaryot Cell , vol.6 , pp. 868-874
    • Rydholm, C.1    Dyer, P.S.2    Lutzoni, F.3
  • 72
    • 34247859117 scopus 로고    scopus 로고
    • Evolution of the mating type locus: Insights gained from the dimorphic primary fungal pathogens Histoplasma capsulatum, Coccidioides immitis, and Coccidioides posadasii
    • Fraser JA, Stajich JE, Tarcha EJ, Cole GT, Inglis DO, et al. (2007) Evolution of the mating type locus: insights gained from the dimorphic primary fungal pathogens Histoplasma capsulatum, Coccidioides immitis, and Coccidioides posadasii. Eukaryot Cell 6: 622-629.
    • (2007) Eukaryot Cell , vol.6 , pp. 622-629
    • Fraser, J.A.1    Stajich, J.E.2    Tarcha, E.J.3    Cole, G.T.4    Inglis, D.O.5
  • 73
    • 0034516348 scopus 로고    scopus 로고
    • Molecular organization of mating type loci in heterothallic, homothallic, and asexual Gibberella/Fusarium species
    • Yun SH, Arie T, Kaneko I, Yoder OC, Turgeon BG (2000) Molecular organization of mating type loci in heterothallic, homothallic, and asexual Gibberella/Fusarium species. Fungal Genet Biol 31: 7-20.
    • (2000) Fungal Genet Biol , vol.31 , pp. 7-20
    • Yun, S.H.1    Arie, T.2    Kaneko, I.3    Yoder, O.C.4    Turgeon, B.G.5
  • 74
    • 0042529141 scopus 로고    scopus 로고
    • Structures of the mating-type loci of Cordyceps takaomontana
    • Yokoyama E, Yamagishi K, Hara A (2003) Structures of the mating-type loci of Cordyceps takaomontana. Appl Environ Microbiol 69: 5019-5022.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 5019-5022
    • Yokoyama, E.1    Yamagishi, K.2    Hara, A.3
  • 75
    • 0036469060 scopus 로고    scopus 로고
    • Unraveling hot spots in binding interfaces: Progress and challenges
    • DeLano WL (2002) Unraveling hot spots in binding interfaces: progress and challenges. Curr Opin Struct Biol 12: 14-20.
    • (2002) Curr Opin Struct Biol , vol.12 , pp. 14-20
    • DeLano, W.L.1
  • 76
    • 64649095458 scopus 로고    scopus 로고
    • The structure of Sox17 bound to DNA reveals a conserved bending topology but selective protein interaction platforms
    • Palasingam P, Jauch R, Ng CK, Kolatkar PR (2009) The structure of Sox17 bound to DNA reveals a conserved bending topology but selective protein interaction platforms. J Mol Biol 388: 619-630.
    • (2009) J Mol Biol , vol.388 , pp. 619-630
    • Palasingam, P.1    Jauch, R.2    Ng, C.K.3    Kolatkar, P.R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.