메뉴 건너뛰기




Volumn 23, Issue 7, 2013, Pages 1109-1117

Comprehensive genome- and transcriptome-wide analyses of mutations associated with microsatellite instability in Korean gastric cancers

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTOME;

EID: 84880068437     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.145706.112     Document Type: Article
Times cited : (56)

References (50)
  • 2
    • 77958471357 scopus 로고    scopus 로고
    • Differential expression analysis for sequence count data
    • Anders S, Huber W. 2010. Differential expression analysis for sequence count data. Genome Biol 11: R106.
    • (2010) Genome Biol , vol.11
    • Anders, S.1    Huber, W.2
  • 4
    • 64749099749 scopus 로고    scopus 로고
    • Role of 59- and 39-untranslated regions of mRNAs in human diseases
    • Chatterjee S, Pal JK. 2009. Role of 59- and 39-untranslated regions of mRNAs in human diseases. Biol Cell 101: 251-262.
    • (2009) Biol Cell , vol.101 , pp. 251-262
    • Chatterjee, S.1    Pal, J.K.2
  • 5
    • 0028908864 scopus 로고
    • Presence and instability of repetitive elements in sequences the altered expression of which characterizes risk for colonic cancer
    • Chen J, Heerdt BG, Augenlicht LH. 1995. Presence and instability of repetitive elements in sequences the altered expression of which characterizes risk for colonic cancer. Cancer Res 55: 174-180.
    • (1995) Cancer Res , vol.55 , pp. 174-180
    • Chen, J.1    Heerdt, B.G.2    Augenlicht, L.H.3
  • 6
    • 0037086076 scopus 로고    scopus 로고
    • Target gene mutation profile differs between gastrointestinal and endometrial tumors with mismatch repair deficiency
    • Duval A, Reperant M, Compoint A, Seruca R, Ranzani GN, Iacopetta B, Hamelin R. 2002. Target gene mutation profile differs between gastrointestinal and endometrial tumors with mismatch repair deficiency. Cancer Res 62: 1609-1612.
    • (2002) Cancer Res , vol.62 , pp. 1609-1612
    • Duval, A.1    Reperant, M.2    Compoint, A.3    Seruca, R.4    Ranzani, G.N.5    Iacopetta, B.6    Hamelin, R.7
  • 7
    • 53049087109 scopus 로고    scopus 로고
    • Genomic and epigenetic instability in colorectal cancer pathogenesis
    • Grady WM, Carethers JM. 2008. Genomic and epigenetic instability in colorectal cancer pathogenesis. Gastroenterology 135: 1079-1099.
    • (2008) Gastroenterology , vol.135 , pp. 1079-1099
    • Grady, W.M.1    Carethers, J.M.2
  • 9
    • 41849101441 scopus 로고    scopus 로고
    • Carcinogenesis and microsatellite instability: The interrelationship between genetics and epigenetics
    • Imai K, Yamamoto H. 2008. Carcinogenesis and microsatellite instability: The interrelationship between genetics and epigenetics. Carcinogenesis 29: 673-680.
    • (2008) Carcinogenesis , vol.29 , pp. 673-680
    • Imai, K.1    Yamamoto, H.2
  • 10
    • 0027285475 scopus 로고
    • Ubiquitous somatic mutations in simple repeated sequences reveal a new mechanism for colonic carcinogenesis
    • Ionov Y, Peinado MA, Malkhosyan S, Shibata D, Perucho M. 1993. Ubiquitous somatic mutations in simple repeated sequences reveal a new mechanism for colonic carcinogenesis. Nature 363: 558-561.
    • (1993) Nature , vol.363 , pp. 558-561
    • Ionov, Y.1    Peinado, M.A.2    Malkhosyan, S.3    Shibata, D.4    Perucho, M.5
  • 11
    • 0842320994 scopus 로고    scopus 로고
    • A role for p300/CREB binding protein genes in promoting cancer progression in colon cancer cell lines with microsatellite instability
    • Ionov Y, Matsui S, Cowell JK. 2004. A role for p300/CREB binding protein genes in promoting cancer progression in colon cancer cell lines with microsatellite instability. Proc Natl Acad Sci 101: 1273-1278.
    • (2004) Proc Natl Acad Sci , vol.101 , pp. 1273-1278
    • Ionov, Y.1    Matsui, S.2    Cowell, J.K.3
  • 12
    • 35648999552 scopus 로고    scopus 로고
    • Endocannabinoid metabolism and uptake: Novel targets for neuropathic and inflammatory pain
    • Jhaveri MD, Richardson D, Chapman V. 2007. Endocannabinoid metabolism and uptake: Novel targets for neuropathic and inflammatory pain. Br J Pharmacol 152: 624-632.
    • (2007) Br J Pharmacol , vol.152 , pp. 624-632
    • Jhaveri, M.D.1    Richardson, D.2    Chapman, V.3
  • 13
    • 69049099970 scopus 로고    scopus 로고
    • DNA mismatch repair deficiency in endometrial carcinoma
    • Karamurzin Y, Rutgers JK. 2009. DNA mismatch repair deficiency in endometrial carcinoma. Int J Gynecol Pathol 28: 239-255.
    • (2009) Int J Gynecol Pathol , vol.28 , pp. 239-255
    • Karamurzin, Y.1    Rutgers, J.K.2
  • 14
    • 0036676871 scopus 로고    scopus 로고
    • Identification of MARCKS, FLJ11383 and TAF1B as putative novel target genes in colorectal carcinomas with microsatellite instability
    • Kim NG, Rhee H, Li LS, Kim H, Lee JS, Kim JH, Kim NK. 2002. Identification of MARCKS, FLJ11383 and TAF1B as putative novel target genes in colorectal carcinomas with microsatellite instability. Oncogene 21: 5081-5087.
    • (2002) Oncogene , vol.21 , pp. 5081-5087
    • Kim, N.G.1    Rhee, H.2    Li, L.S.3    Kim, H.4    Lee, J.S.5    Kim, J.H.6    Kim, N.K.7
  • 16
    • 77949587649 scopus 로고    scopus 로고
    • Fast and accurate long-read alignment with Burrows-Wheeler transform
    • Li H, Durbin R. 2010. Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics 26: 589-595.
    • (2010) Bioinformatics , vol.26 , pp. 589-595
    • Li, H.1    Durbin, R.2
  • 19
    • 34047226825 scopus 로고    scopus 로고
    • Aberrant regulation of messenger RNA 39-untranslated region in human cancer
    • Lopez de Silanes I, Quesada MP, Esteller M. 2007. Aberrant regulation of messenger RNA 39-untranslated region in human cancer. Cell Oncol 29: 1-17.
    • (2007) Cell Oncol , vol.29 , pp. 1-17
    • Lopez De Silanes, I.1    Quesada, M.P.2    Esteller, M.3
  • 22
    • 0035503171 scopus 로고    scopus 로고
    • Somatic mutations in the DNA damage-response genes ATR and CHK1 in sporadic stomach tumors with microsatellite instability
    • Menoyo A, Alazzouzi H, Espin E, Armengol M, Yamamoto H, Schwartz S Jr. 2001. Somatic mutations in the DNA damage-response genes ATR and CHK1 in sporadic stomach tumors with microsatellite instability. Cancer Res 61: 7727-7730.
    • (2001) Cancer Res , vol.61 , pp. 7727-7730
    • Menoyo, A.1    Alazzouzi, H.2    Espin, E.3    Armengol, M.4    Yamamoto, H.5    Schwartz Jr., S.6
  • 24
    • 0028785602 scopus 로고
    • A transforming growth factor b receptor type II gene mutation common in colon and gastric but rare in endometrial cancers with microsatellite instability
    • Myeroff LL, Parsons R, Kim SJ, Hedrick L, Cho KR, Orth K, Mathis M, Kinzler KW, Lutterbaugh J, Park K, et al. 1995. A transforming growth factor b receptor type II gene mutation common in colon and gastric but rare in endometrial cancers with microsatellite instability. Cancer Res 55: 5545-5547.
    • (1995) Cancer Res , vol.55 , pp. 5545-5547
    • Myeroff, L.L.1    Parsons, R.2    Kim, S.J.3    Hedrick, L.4    Cho, K.R.5    Orth, K.6    Mathis, M.7    Kinzler, K.W.8    Lutterbaugh, J.9    Park, K.10
  • 25
    • 33745603755 scopus 로고    scopus 로고
    • Patterns of genomic instability in gastric cancer: Clinical implications and perspectives
    • Ottini L, Falchetti M, Lupi R, Rizzolo P, Agnese V, Colucci G, Bazan V, Russo A. 2006. Patterns of genomic instability in gastric cancer: Clinical implications and perspectives. Ann Oncol 17 (Suppl 7): vii97-vii102.
    • (2006) Ann Oncol , vol.17 , Issue.SUPPL. 7
    • Ottini, L.1    Falchetti, M.2    Lupi, R.3    Rizzolo, P.4    Agnese, V.5    Colucci, G.6    Bazan, V.7    Russo, A.8
  • 26
    • 70449580336 scopus 로고    scopus 로고
    • Screening for microsatellite instability identifies frequent 39-untranslated region mutation of the RB1-inducible coiled-coil 1 gene in colon tumors
    • e7715
    • Paun BC, Cheng Y, Leggett BA, Young J, Meltzer SJ, Mori Y. 2009. Screening for microsatellite instability identifies frequent 39-untranslated region mutation of the RB1-inducible coiled-coil 1 gene in colon tumors. PLoS ONE 4: e7715.
    • (2009) PLoS ONE , vol.4
    • Paun, B.C.1    Cheng, Y.2    Leggett, B.A.3    Young, J.4    Meltzer, S.J.5    Mori, Y.6
  • 27
    • 0029941476 scopus 로고    scopus 로고
    • Microsatellite instability: The mutator that mutates the other mutator
    • Perucho M. 1996. Microsatellite instability: The mutator that mutates the other mutator. Nat Med 2: 630-631.
    • (1996) Nat Med , vol.2 , pp. 630-631
    • Perucho, M.1
  • 28
    • 12344281782 scopus 로고    scopus 로고
    • The implications of structured 59 untranslated regions on translation and disease
    • Pickering BM, Willis AE. 2005. The implications of structured 59 untranslated regions on translation and disease. Semin Cell Dev Biol 16: 39-47.
    • (2005) Semin Cell Dev Biol , vol.16 , pp. 39-47
    • Pickering, B.M.1    Willis, A.E.2
  • 29
    • 79958261864 scopus 로고    scopus 로고
    • Microsatellite instability in the management of colorectal cancer
    • Pino MS, Chung DC. 2011. Microsatellite instability in the management of colorectal cancer. Expert Rev Gastroenterol Hepatol 5: 385-399.
    • (2011) Expert Rev Gastroenterol Hepatol , vol.5 , pp. 385-399
    • Pino, M.S.1    Chung, D.C.2
  • 30
    • 0031018674 scopus 로고    scopus 로고
    • Somatic frameshift mutations in the BAX gene in colon cancers of the microsatellite mutator phenotype
    • Rampino N, Yamamoto H, Ionov Y, Li Y, Sawai H, Reed JC, Perucho M. 1997. Somatic frameshift mutations in the BAX gene in colon cancers of the microsatellite mutator phenotype. Science 275: 967-969.
    • (1997) Science , vol.275 , pp. 967-969
    • Rampino, N.1    Yamamoto, H.2    Ionov, Y.3    Li, Y.4    Sawai, H.5    Reed, J.C.6    Perucho, M.7
  • 31
    • 66049162655 scopus 로고    scopus 로고
    • Execution of nonsense-mediated mRNA decay: What defines a substrate?
    • Rebbapragada I, Lykke-Andersen J. 2009. Execution of nonsense-mediated mRNA decay: What defines a substrate? Curr Opin Cell Biol 21: 394-402.
    • (2009) Curr Opin Cell Biol , vol.21 , pp. 394-402
    • Rebbapragada, I.1    Lykke-Andersen, J.2
  • 33
    • 39049167505 scopus 로고    scopus 로고
    • Slip slidin' away: A duodecennial review of targeted genes in mismatch repair deficient colorectal cancer
    • Royrvik EC, Ahlquist T, Rognes T, Lothe RA. 2007. Slip slidin' away: A duodecennial review of targeted genes in mismatch repair deficient colorectal cancer. Crit Rev Oncog 13: 229-257.
    • (2007) Crit Rev Oncog , vol.13 , pp. 229-257
    • Royrvik, E.C.1    Ahlquist, T.2    Rognes, T.3    Lothe, R.A.4
  • 35
    • 0034095091 scopus 로고    scopus 로고
    • Microsatellite instability is associated with genetic alteration but not with low levels of expression of the human mismatch repair proteins hMSH2 and hMLH1
    • Shin KH, Park JG. 2000. Microsatellite instability is associated with genetic alteration but not with low levels of expression of the human mismatch repair proteins hMSH2 and hMLH1. Eur J Cancer 36: 925-931.
    • (2000) Eur J Cancer , vol.36 , pp. 925-931
    • Shin, K.H.1    Park, J.G.2
  • 36
    • 79955439843 scopus 로고    scopus 로고
    • Identification of frequently mutated genes with relevance to nonsense mediated mRNA decay in the high microsatellite instability cancers
    • Shin N, You KT, Lee H, Kim WK, Song M, Choi HJ, Rhee H, Nam SW, Kim H. 2011. Identification of frequently mutated genes with relevance to nonsense mediated mRNA decay in the high microsatellite instability cancers. Int J Cancer 128: 2872-2880.
    • (2011) Int J Cancer , vol.128 , pp. 2872-2880
    • Shin, N.1    You, K.T.2    Lee, H.3    Kim, W.K.4    Song, M.5    Choi, H.J.6    Rhee, H.7    Nam, S.W.8    Kim, H.9
  • 37
    • 58649117962 scopus 로고    scopus 로고
    • The mammalian nonsense-mediated mRNA decay pathway: To decay or not to decay! Which players make the decision?
    • Silva AL, Romao L. 2009. The mammalian nonsense-mediated mRNA decay pathway: To decay or not to decay! Which players make the decision? FEBS Lett 583: 499-505.
    • (2009) FEBS Lett , vol.583 , pp. 499-505
    • Silva, A.L.1    Romao, L.2
  • 38
    • 79953158399 scopus 로고    scopus 로고
    • Exploring the genomes of cancer cells: Progress and promise
    • Stratton MR. 2011. Exploring the genomes of cancer cells: Progress and promise. Science 331: 1553-1558.
    • (2011) Science , vol.331 , pp. 1553-1558
    • Stratton, M.R.1
  • 39
    • 0035829656 scopus 로고    scopus 로고
    • Conservation of mononucleotide repeats within 39 and 59 untranslated regions and their instability in MSI-H colorectal cancer
    • Suraweera N, Iacopetta B, Duval A, Compoint A, Tubacher E, Hamelin R. 2001. Conservation of mononucleotide repeats within 39 and 59 untranslated regions and their instability in MSI-H colorectal cancer. Oncogene 20: 7472-7477.
    • (2001) Oncogene , vol.20 , pp. 7472-7477
    • Suraweera, N.1    Iacopetta, B.2    Duval, A.3    Compoint, A.4    Tubacher, E.5    Hamelin, R.6
  • 41
    • 77957369859 scopus 로고    scopus 로고
    • Epigenetic drivers of genetic alterations
    • Toyota M, Suzuki H. 2010. Epigenetic drivers of genetic alterations. Adv Genet 70: 309-323.
    • (2010) Adv Genet , vol.70 , pp. 309-323
    • Toyota, M.1    Suzuki, H.2
  • 42
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: Discovering splice junctions with RNA-Seq
    • Trapnell C, Pachter L, Salzberg SL. 2009. TopHat: Discovering splice junctions with RNA-Seq. Bioinformatics 25: 1105-1111.
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 43
    • 77949270273 scopus 로고    scopus 로고
    • Microsatellite instability in colorectal cancer - The stable evidence
    • Vilar E, Gruber SB. 2010. Microsatellite instability in colorectal cancer - the stable evidence. Nat Rev Clin Oncol 7: 153-162.
    • (2010) Nat Rev Clin Oncol , vol.7 , pp. 153-162
    • Vilar, E.1    Gruber, S.B.2
  • 45
    • 79251475891 scopus 로고    scopus 로고
    • Nonsense mediated decay resistant mutations are a source of expressed mutant proteins in colon cancer cell lines with microsatellite instability
    • e16012
    • Williams DS, Bird MJ, Jorissen RN, Yu YL, Walker F, Zhang HH, Nice EC, Burgess AW. 2010. Nonsense mediated decay resistant mutations are a source of expressed mutant proteins in colon cancer cell lines with microsatellite instability. PLoS ONE 5: e16012.
    • (2010) PLoS ONE , vol.5
    • Williams, D.S.1    Bird, M.J.2    Jorissen, R.N.3    Yu, Y.L.4    Walker, F.5    Zhang, H.H.6    Nice, E.C.7    Burgess, A.W.8
  • 47
    • 75549089295 scopus 로고    scopus 로고
    • SelTarbase, a database of human mononucleotide-microsatellite mutations and their potential impact to tumorigenesis and immunology
    • Woerner SM, Yuan YP, Benner A, Korff S, von Knebel Doeberitz M, Bork P. 2010. SelTarbase, a database of human mononucleotide-microsatellite mutations and their potential impact to tumorigenesis and immunology. Nucleic Acids Res 38: D682-D689.
    • (2010) Nucleic Acids Res , vol.38
    • Woerner, S.M.1    Yuan, Y.P.2    Benner, A.3    Korff, S.4    Von Knebel Doeberitz, M.5    Bork, P.6
  • 48
    • 70350215709 scopus 로고    scopus 로고
    • An A13 repeat within the 39-untranslated region of epidermal growth factor receptor (EGFR) is frequently mutated in microsatellite instability colon cancers and is associated with increased EGFR expression
    • Yuan Z, Shin J, Wilson A, Goel S, Ling YH, Ahmed N, Dopeso H, Jhawer M, Nasser S, Montagna C, et al. 2009. An A13 repeat within the 39-untranslated region of epidermal growth factor receptor (EGFR) is frequently mutated in microsatellite instability colon cancers and is associated with increased EGFR expression. Cancer Res 69: 7811-7818.
    • (2009) Cancer Res , vol.69 , pp. 7811-7818
    • Yuan, Z.1    Shin, J.2    Wilson, A.3    Goel, S.4    Ling, Y.H.5    Ahmed, N.6    Dopeso, H.7    Jhawer, M.8    Nasser, S.9    Montagna, C.10
  • 50


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.