메뉴 건너뛰기




Volumn 8, Issue 7, 2013, Pages

New Metrics for Comparison of Taxonomies Reveal Striking Discrepancies among Species Delimitation Methods in Madascincus Lizards

Author keywords

[No Author keywords available]

Indexed keywords

CELL NUCLEUS DNA; MITOCHONDRIAL DNA;

EID: 84880059710     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0068242     Document Type: Article
Times cited : (175)

References (105)
  • 1
    • 0034616202 scopus 로고    scopus 로고
    • Species delimitation in systematics: inferring diagnostic differences between species
    • Wiens JJ, Servedio MR, (2000) Species delimitation in systematics: inferring diagnostic differences between species. Proc R Soc B 267: 631-636.
    • (2000) Proc R Soc B , vol.267 , pp. 631-636
    • Wiens, J.J.1    Servedio, M.R.2
  • 2
    • 84863531597 scopus 로고    scopus 로고
    • Mapping the biosphere: Exploring species to understand the origin, organization, and sustainability of biodiversity
    • Wheeler QD, Knapp S, Stevenson DW, Stevenson J, Blum SD, et al. (2012) Mapping the biosphere: Exploring species to understand the origin, organization, and sustainability of biodiversity. Syst Biodivers 10: 1-20.
    • (2012) Syst Biodivers , vol.10 , pp. 1-20
    • Wheeler, Q.D.1    Knapp, S.2    Stevenson, D.W.3    Stevenson, J.4    Blum, S.D.5
  • 3
    • 84866326795 scopus 로고    scopus 로고
    • A turbo-taxonomic study of Thai Aleiodes (Aleiodes) and Aleiodes (Arcaleiodes) (Hymenoptera: Braconidae: Rogadinae) based largely on COI barcoded specimens, with rapid descriptions of 179 new species
    • Areekul Butcher B, Quicke DLJ, (2012) A turbo-taxonomic study of Thai Aleiodes (Aleiodes) and Aleiodes (Arcaleiodes) (Hymenoptera: Braconidae: Rogadinae) based largely on COI barcoded specimens, with rapid descriptions of 179 new species. Zootaxa 3457: 1-232.
    • (2012) Zootaxa , vol.3457 , pp. 1-232
    • Areekul Butcher, B.1    Quicke, D.L.J.2
  • 4
    • 84872804198 scopus 로고    scopus 로고
    • Can we name Earth's species before they go extinct?
    • Costello MJ, May RM, Stork NE, (2013) Can we name Earth's species before they go extinct? Science 339: 413-416.
    • (2013) Science , vol.339 , pp. 413-416
    • Costello, M.J.1    May, R.M.2    Stork, N.E.3
  • 5
    • 84875307959 scopus 로고    scopus 로고
    • Integrative taxonomy on the fast track - towards more sustainability in biodiversity research
    • Riedel A, Sagata K, Suhardjono YR, Tänzler R, Balke M, (2013) Integrative taxonomy on the fast track- towards more sustainability in biodiversity research. Front Zool 10: e15.
    • (2013) Front Zool , vol.10
    • Riedel, A.1    Sagata, K.2    Suhardjono, Y.R.3    Tänzler, R.4    Balke, M.5
  • 6
    • 84875796994 scopus 로고    scopus 로고
    • One hundred and one new species of Trigonopterus weevils from New Guinea
    • Riedel A, Sagata K, Surbakti S, Tänzler R, Balke M, (2013) One hundred and one new species of Trigonopterus weevils from New Guinea. ZooKeys 280: 1-150.
    • (2013) ZooKeys , vol.280 , pp. 1-150
    • Riedel, A.1    Sagata, K.2    Surbakti, S.3    Tänzler, R.4    Balke, M.5
  • 7
    • 36248953914 scopus 로고    scopus 로고
    • Species delimitation: new approaches for discovering diversity
    • Wiens JJ, (2007) Species delimitation: new approaches for discovering diversity. Syst Biol 56: 875-878.
    • (2007) Syst Biol , vol.56 , pp. 875-878
    • Wiens, J.J.1
  • 8
    • 0000216233 scopus 로고    scopus 로고
    • A hierarchy of species concepts: the denouement in the saga of the species problem
    • (ed. M. Claridge, H.A. Darwah, M.R. Wilson)
    • Mayden RL (1997) A hierarchy of species concepts: the denouement in the saga of the species problem. In: Species: The Units of Biodiversity (ed. M. Claridge, H.A. Darwah, M.R. Wilson), 381-424. London: Chapman and Hall.
    • (1997) Species: The Units of Biodiversity , pp. 381-424
    • Mayden, R.L.1
  • 9
    • 36249004900 scopus 로고    scopus 로고
    • Species concepts and species delimitation
    • De Queiroz K, (2007) Species concepts and species delimitation. Syst Biol 56: 879-886.
    • (2007) Syst Biol , vol.56 , pp. 879-886
    • De Queiroz, K.1
  • 10
    • 0042011260 scopus 로고    scopus 로고
    • Delimiting species: a Renaissance issue in systematic biology
    • Sites JW Jr, Marshall JC, (2003) Delimiting species: a Renaissance issue in systematic biology. Trends Ecol Evol 18: 462-470.
    • (2003) Trends Ecol Evol , vol.18 , pp. 462-470
    • Sites Jr., J.W.1    Marshall, J.C.2
  • 12
    • 22044434823 scopus 로고    scopus 로고
    • Toward integrative taxonomy
    • Dayrat B, (2005) Toward integrative taxonomy. Biol J Linn Soc 85: 407-415.
    • (2005) Biol J Linn Soc , vol.85 , pp. 407-415
    • Dayrat, B.1
  • 13
    • 77952468441 scopus 로고    scopus 로고
    • The integrative future of taxonomy
    • doi:10.1186/1742-9994-7-16
    • Padial JM, Miralles A, De la Riva I, Vences M, (2010) The integrative future of taxonomy. Front Zool 7: 16 doi: 10.1186/1742-9994-7-16.
    • (2010) Front Zool , vol.7 , pp. 16
    • Padial, J.M.1    Miralles, A.2    De la Riva, I.3    Vences, M.4
  • 14
    • 33747069437 scopus 로고    scopus 로고
    • Delimiting species: comparing methods for Mendelian characters using lizards of the Sceloporus grammicus (Squamata: Phrynosomatidae) complex
    • Marshall JC, Arèvalo E, Benavidas E, Sites J, Sites JW Jr, (2006) Delimiting species: comparing methods for Mendelian characters using lizards of the Sceloporus grammicus (Squamata: Phrynosomatidae) complex. Evolution 60: 1050-1065.
    • (2006) Evolution , vol.60 , pp. 1050-1065
    • Marshall, J.C.1    Arèvalo, E.2    Benavidas, E.3    Sites, J.4    Sites Jr., J.W.5
  • 15
    • 79952125428 scopus 로고    scopus 로고
    • Species delimitation under the general lineage concept: an empirical example using wild North American hops (Cannabaceae: Humulus lupulus)
    • Reeves PA, Richards CM, (2011) Species delimitation under the general lineage concept: an empirical example using wild North American hops (Cannabaceae: Humulus lupulus). Syst. Biol. 60: 45-59.
    • (2011) Syst. Biol , vol.60 , pp. 45-59
    • Reeves, P.A.1    Richards, C.M.2
  • 16
    • 34548444940 scopus 로고    scopus 로고
    • Sequence-based species delimitation for the DNA taxonomy of undescribed insects
    • Pons J, Barraclough TG, Gomez-Zurita J, Cardoso A, Duran DP, et al. (2006) Sequence-based species delimitation for the DNA taxonomy of undescribed insects. Syst Biol 55: 595-609.
    • (2006) Syst Biol , vol.55 , pp. 595-609
    • Pons, J.1    Barraclough, T.G.2    Gomez-Zurita, J.3    Cardoso, A.4    Duran, D.P.5
  • 17
    • 77952703002 scopus 로고    scopus 로고
    • Bayesian species delimitation using multilocus sequence data
    • Yang Z, Rannala B, (2010) Bayesian species delimitation using multilocus sequence data. Proc Nat Acad Sci U S A 107: 9264-9269.
    • (2010) Proc Nat Acad Sci U S A , vol.107 , pp. 9264-9269
    • Yang, Z.1    Rannala, B.2
  • 18
    • 77957245259 scopus 로고    scopus 로고
    • A clustering optimization strategy for molecular taxonomy applied to planktonic Foraminifera SSU rDNA
    • Göker M, Grimm GW, Auch AF, Aurahs R, Kučera M, (2010) A clustering optimization strategy for molecular taxonomy applied to planktonic Foraminifera SSU rDNA. Evol Bioinform 6: 97-112.
    • (2010) Evol Bioinform , vol.6 , pp. 97-112
    • Göker, M.1    Grimm, G.W.2    Auch, A.F.3    Aurahs, R.4    Kučera, M.5
  • 19
    • 72049107504 scopus 로고    scopus 로고
    • New heuristic methods for joint species delimitation and species tree inference
    • O'Meara BC, (2010) New heuristic methods for joint species delimitation and species tree inference. Syst Biol 59: 59-73.
    • (2010) Syst Biol , vol.59 , pp. 59-73
    • O'Meara, B.C.1
  • 20
    • 78650161506 scopus 로고    scopus 로고
    • Species delimitation - a Geneious plugin for the exploration of species boundaries
    • Masters BC, Fan V, Ross HA, (2011) Species delimitation - a Geneious plugin for the exploration of species boundaries. Mol Ecol Resour 11: 154-157.
    • (2011) Mol Ecol Resour , vol.11 , pp. 154-157
    • Masters, B.C.1    Fan, V.2    Ross, H.A.3
  • 21
    • 79954549463 scopus 로고    scopus 로고
    • SpedeSTEM: a rapid and accurate method for species delimitation
    • Ence DD, Carstens BC, (2011) SpedeSTEM: a rapid and accurate method for species delimitation. Mol Ecol Resour 11: 473-480.
    • (2011) Mol Ecol Resour , vol.11 , pp. 473-480
    • Ence, D.D.1    Carstens, B.C.2
  • 22
    • 84859589467 scopus 로고    scopus 로고
    • ABGD, Automatic Barcode Gap Discovery for primary species delimitation
    • Puillandre N, Lambert A, Brouillet S, Achaz G, (2012) ABGD, Automatic Barcode Gap Discovery for primary species delimitation. Mol Ecol 21: 1864-1877.
    • (2012) Mol Ecol , vol.21 , pp. 1864-1877
    • Puillandre, N.1    Lambert, A.2    Brouillet, S.3    Achaz, G.4
  • 23
    • 0036005519 scopus 로고    scopus 로고
    • Delimiting species using DNA and morphological variation and discordant species limits in spiny lizards (Sceloporus)
    • Wiens JJ, Penkrot TA, (2002) Delimiting species using DNA and morphological variation and discordant species limits in spiny lizards (Sceloporus). Syst Biol 51: 69-91.
    • (2002) Syst Biol , vol.51 , pp. 69-91
    • Wiens, J.J.1    Penkrot, T.A.2
  • 24
    • 31344458132 scopus 로고    scopus 로고
    • The unholy trinity: taxonomy, species delimitation and DNA barcoding
    • DeSalle R, Egan MG, Siddal M, (2005) The unholy trinity: taxonomy, species delimitation and DNA barcoding. Phil Trans R Soc B 360: 1905-1916.
    • (2005) Phil Trans R Soc B , vol.360 , pp. 1905-1916
    • DeSalle, R.1    Egan, M.G.2    Siddal, M.3
  • 25
    • 61849120412 scopus 로고    scopus 로고
    • An integrative method for delimiting cohesion species: finding the population-species interface in a group of Californian trapdoor spiders which extreme genetic divergence and geographic structuring
    • Bond JE, Stockman AK, (2008) An integrative method for delimiting cohesion species: finding the population-species interface in a group of Californian trapdoor spiders which extreme genetic divergence and geographic structuring. Syst Biol 57: 628-646.
    • (2008) Syst Biol , vol.57 , pp. 628-646
    • Bond, J.E.1    Stockman, A.K.2
  • 26
    • 65649131928 scopus 로고    scopus 로고
    • Gene tree discordance, phylogenetic inference and the multispecies coalescent
    • Degnan JH, Rosenberg NA, (2009) Gene tree discordance, phylogenetic inference and the multispecies coalescent. Trends Ecol Evol 24: 332-340.
    • (2009) Trends Ecol Evol , vol.24 , pp. 332-340
    • Degnan, J.H.1    Rosenberg, N.A.2
  • 27
    • 49649094989 scopus 로고    scopus 로고
    • Detection of two cryptic taxa in Meristogenys amoropalmatus (Amphibia, Ranidae) through nuclear and mitochondrial DNA analyses
    • Shimada T, Matsui M, Yambun P, Lakim M, Mohamed M, (2008) Detection of two cryptic taxa in Meristogenys amoropalmatus (Amphibia, Ranidae) through nuclear and mitochondrial DNA analyses. Zootaxa1843: 24-34.
    • (2008) Zootaxa , vol.1843 , pp. 24-34
    • Shimada, T.1    Matsui, M.2    Yambun, P.3    Lakim, M.4    Mohamed, M.5
  • 28
    • 64549157225 scopus 로고    scopus 로고
    • Complicated histories: three new species of poison frogs of the genus Ameerega (Anura: Dendrobatidae) from north-central Peru
    • Brown JL, Twomey E, (2009) Complicated histories: three new species of poison frogs of the genus Ameerega (Anura: Dendrobatidae) from north-central Peru. Zootaxa 2049: 1-38.
    • (2009) Zootaxa , vol.2049 , pp. 1-38
    • Brown, J.L.1    Twomey, E.2
  • 29
    • 68149112607 scopus 로고    scopus 로고
    • Quantifying ecological, morphological, and genetic variation to delimit species in the coast horned lizard species complex (Phrynosoma)
    • Leaché AD, Koo AS, Spencer CL, Papenfuss TJ, Fisher RN, et al. (2009) Quantifying ecological, morphological, and genetic variation to delimit species in the coast horned lizard species complex (Phrynosoma). Proc Natl Acad Sci U S A 106: 12418-12423.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 12418-12423
    • Leaché, A.D.1    Koo, A.S.2    Spencer, C.L.3    Papenfuss, T.J.4    Fisher, R.N.5
  • 30
    • 84555177821 scopus 로고    scopus 로고
    • Phylogenetic and coalescent strategies of species delimitation in nubnose darters (Percidae: Etheostoma)
    • Harrington RC, Near TJ, (2012) Phylogenetic and coalescent strategies of species delimitation in nubnose darters (Percidae: Etheostoma). Syst Biol 61: 63-79.
    • (2012) Syst Biol , vol.61 , pp. 63-79
    • Harrington, R.C.1    Near, T.J.2
  • 31
    • 0028151986 scopus 로고
    • Defining "Evolutionarily Significant Units" for conservation
    • Moritz C, (1994) Defining "Evolutionarily Significant Units" for conservation. Trends Ecol Evol 9: 373-375.
    • (1994) Trends Ecol Evol , vol.9 , pp. 373-375
    • Moritz, C.1
  • 32
    • 78649486233 scopus 로고    scopus 로고
    • Haplowebs as a graphical tool for delimiting species: a revival of Doyle's "field for recombination" approach and its application to the coral genus Pocillopora in Clipperton
    • Flot J-F, Couloux A, Tillier S, (2010) Haplowebs as a graphical tool for delimiting species: a revival of Doyle's "field for recombination" approach and its application to the coral genus Pocillopora in Clipperton. BMC Evol Biol 10: e372.
    • (2010) BMC Evol Biol , vol.10
    • Flot, J.-F.1    Couloux, A.2    Tillier, S.3
  • 34
    • 84863084320 scopus 로고    scopus 로고
    • Accounting for uncertainty in species delineation during the analysis of environmental DNA sequence data
    • Powell JL, (2012) Accounting for uncertainty in species delineation during the analysis of environmental DNA sequence data. Methods Ecol Evol 1: 1-11.
    • (2012) Methods Ecol Evol , vol.1 , pp. 1-11
    • Powell, J.L.1
  • 35
    • 70349409998 scopus 로고    scopus 로고
    • Accelerated species inventory on Madagascar using coalescent-based models of species delineation
    • Monaghan MT, Wild R, Elliot M, Fujisawa T, Balke M, et al. (2009) Accelerated species inventory on Madagascar using coalescent-based models of species delineation. Syst Biol 58: 298-311.
    • (2009) Syst Biol , vol.58 , pp. 298-311
    • Monaghan, M.T.1    Wild, R.2    Elliot, M.3    Fujisawa, T.4    Balke, M.5
  • 36
    • 77955598650 scopus 로고    scopus 로고
    • Species delineation using Bayesian model-based assignment tests: a case study using Chinese toad-headed agamas (genus Phrynocephalus)
    • Noble DWA, Qi Y, Fu J, (2010) Species delineation using Bayesian model-based assignment tests: a case study using Chinese toad-headed agamas (genus Phrynocephalus). BMC Evol Biol 10: 197.
    • (2010) BMC Evol Biol , vol.10 , pp. 197
    • Noble, D.W.A.1    Qi, Y.2    Fu, J.3
  • 37
    • 77953729511 scopus 로고    scopus 로고
    • Species delimitation using a combined coalescent and information-theoretic approach: an example from North American Myotis bats
    • Carstens BC, Dewey TA, (2010) Species delimitation using a combined coalescent and information-theoretic approach: an example from North American Myotis bats. Syst Biol 59: 400-414.
    • (2010) Syst Biol , vol.59 , pp. 400-414
    • Carstens, B.C.1    Dewey, T.A.2
  • 38
    • 84872093404 scopus 로고    scopus 로고
    • Bayesian species delimitation in West African forest geckos (Hemidactylus fasciatus)
    • Leaché AD, Fujita MK, (2010) Bayesian species delimitation in West African forest geckos (Hemidactylus fasciatus). Proc R Soc B 278: 490-492.
    • (2010) Proc R Soc B , vol.278 , pp. 490-492
    • Leaché, A.D.1    Fujita, M.K.2
  • 39
  • 40
    • 80053548008 scopus 로고    scopus 로고
    • Incongruence between morphotypes and genetically delimited species in the coral genus Stylophora: phenotypic plasticity, morphological convergence, morphological stasis or interspecific hybridization?
    • doi:10.1186/1472-6785-11-22
    • Flot J-F, Blanchot J, Charpy L, Cruaud C, Licuanan W, et al. (2011) Incongruence between morphotypes and genetically delimited species in the coral genus Stylophora: phenotypic plasticity, morphological convergence, morphological stasis or interspecific hybridization? BMC Ecol 11: e22 doi: 10.1186/1472-6785-11-22.
    • (2011) BMC Ecol , vol.11
    • Flot, J.-F.1    Blanchot, J.2    Charpy, L.3    Cruaud, C.4    Licuanan, W.5
  • 41
    • 79551638055 scopus 로고    scopus 로고
    • Availability of new Bayesian-delimited gecko names and the importance of character-based species descriptions
    • Bauer AM, Parham JF, Brown RM, Stuart BL, Grismer L, et al. (2011) Availability of new Bayesian-delimited gecko names and the importance of character-based species descriptions. Proc R Soc B 278: 490-492.
    • (2011) Proc R Soc B , vol.278 , pp. 490-492
    • Bauer, A.M.1    Parham, J.F.2    Brown, R.M.3    Stuart, B.L.4    Grismer, L.5
  • 42
    • 79551638267 scopus 로고    scopus 로고
    • A coalescent perspective on delimiting and naming species: a reply to Bauer, et al
    • Fujita MK, Leaché AD, (2011) A coalescent perspective on delimiting and naming species: a reply to Bauer, et al. Proc R Soc B 278: 493-495.
    • (2011) Proc R Soc B , vol.278 , pp. 493-495
    • Fujita, M.K.1    Leaché, A.D.2
  • 43
    • 84861198911 scopus 로고    scopus 로고
    • A comparison of DNA-based methods for delimiting species in a Cretan land snail radiation reveals shortcomings of exclusively molecular taxonomy
    • Sauer J, Hausdorf B, (2012) A comparison of DNA-based methods for delimiting species in a Cretan land snail radiation reveals shortcomings of exclusively molecular taxonomy. Cladistics 28: 300-316.
    • (2012) Cladistics , vol.28 , pp. 300-316
    • Sauer, J.1    Hausdorf, B.2
  • 44
    • 34547844062 scopus 로고    scopus 로고
    • TOPD/FMTS: a new software to compare phylogenetic trees
    • Puigbò P, Garcia-Vallvé S, McInerney JO, (2007) TOPD/FMTS: a new software to compare phylogenetic trees. Bioinformatics 23: 1556-1558.
    • (2007) Bioinformatics , vol.23 , pp. 1556-1558
    • Puigbò, P.1    Garcia-Vallvé, S.2    McInerney, J.O.3
  • 45
    • 79961206352 scopus 로고    scopus 로고
    • TreeKO: a duplication-aware algorithm for the comparison of phylogenetic trees
    • Marcet-Houben M, Gabaldo T, (2011) TreeKO: a duplication-aware algorithm for the comparison of phylogenetic trees. Nucleic Acids Res 39: e66.
    • (2011) Nucleic Acids Res , vol.39
    • Marcet-Houben, M.1    Gabaldo, T.2
  • 47
    • 79955952548 scopus 로고    scopus 로고
    • A molecular phylogeny of the Madascincus polleni species complex, with description of a new species of scincid lizard from the coastal dune area of northern Madagascar
    • Miralles A, Kölhler J, Glaw F, Vences M, (2011a) A molecular phylogeny of the Madascincus polleni species complex, with description of a new species of scincid lizard from the coastal dune area of northern Madagascar. Zootaxa 2876: 1-16.
    • (2011) Zootaxa , vol.2876 , pp. 1-16
    • Miralles, A.1    Kölhler, J.2    Glaw, F.3    Vences, M.4
  • 48
    • 42049101227 scopus 로고    scopus 로고
    • Aligning Conservation Priorities Across Taxa in Madagascar with High-Resolution Planning Tools
    • Kremen C, Cameron A, Moilanen A, Phillips SJ, Thomas CD, et al. (2008) Aligning Conservation Priorities Across Taxa in Madagascar with High-Resolution Planning Tools. Science 320: 222-226.
    • (2008) Science , vol.320 , pp. 222-226
    • Kremen, C.1    Cameron, A.2    Moilanen, A.3    Phillips, S.J.4    Thomas, C.D.5
  • 49
    • 33745078845 scopus 로고    scopus 로고
    • Molecular phylogenetics of Malagasy skinks (Squamata: Scincidae)
    • Whiting AS, Sites JW Jr, Bauer AM, (2004) Molecular phylogenetics of Malagasy skinks (Squamata: Scincidae). Afr J Herpetol 53: 135-146.
    • (2004) Afr J Herpetol , vol.53 , pp. 135-146
    • Whiting, A.S.1    Sites Jr., J.W.2    Bauer, A.M.3
  • 50
    • 9944261045 scopus 로고    scopus 로고
    • Opening the black box: phylogenetics and morphological evolution of the Malagasy fossorial lizards of the subfamily "Scincinae"
    • Schmitz A, Brandley MC, Mausfeld P, Vences M, Glaw F, et al. (2005) Opening the black box: phylogenetics and morphological evolution of the Malagasy fossorial lizards of the subfamily "Scincinae". Mol Phyl Evol 34: 118-133.
    • (2005) Mol Phyl Evol , vol.34 , pp. 118-133
    • Schmitz, A.1    Brandley, M.C.2    Mausfeld, P.3    Vences, M.4    Glaw, F.5
  • 51
    • 68049139241 scopus 로고    scopus 로고
    • A multilocus phylogeny of Malagasy scincid lizards elucidates the relationships of the fossorial genera Androngo and Cryptoscincus
    • Crottini A, Dordel J, Köhler J, Glaw F, Schmitz A, et al. (2009) A multilocus phylogeny of Malagasy scincid lizards elucidates the relationships of the fossorial genera Androngo and Cryptoscincus. Mol Phyl Evol 53: 345-350.
    • (2009) Mol Phyl Evol , vol.53 , pp. 345-350
    • Crottini, A.1    Dordel, J.2    Köhler, J.3    Glaw, F.4    Schmitz, A.5
  • 52
    • 79958785690 scopus 로고    scopus 로고
    • A new large and colorful skink of the genus Amphiglossus from Madagascar revealed by morphology and multilocus molecular study
    • Miralles A, Raselimanana AP, Rakotomalala D, Vences M, Vieites DR, (2011b) A new large and colorful skink of the genus Amphiglossus from Madagascar revealed by morphology and multilocus molecular study. Zootaxa 2918: 47-67.
    • (2011) Zootaxa , vol.2918 , pp. 47-67
    • Miralles, A.1    Raselimanana, A.P.2    Rakotomalala, D.3    Vences, M.4    Vieites, D.R.5
  • 53
    • 0036773731 scopus 로고    scopus 로고
    • Malagasy scincid lizards: descriptions of nine new species, with notes on the morphology, reproduction and taxonomy of some previously described species (Reptilia, Squamata: Scincidae)
    • Andreone F, Greer AE, (2002) Malagasy scincid lizards: descriptions of nine new species, with notes on the morphology, reproduction and taxonomy of some previously described species (Reptilia, Squamata: Scincidae). J Zool 258: 139-181.
    • (2002) J Zool , vol.258 , pp. 139-181
    • Andreone, F.1    Greer, A.E.2
  • 54
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA, (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41: 95-98.
    • (1999) Nucleic Acids Symp Ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 55
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • Castresana J, (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17: 540-552.
    • (2000) Mol Biol Evol , vol.17 , pp. 540-552
    • Castresana, J.1
  • 56
    • 57649236247 scopus 로고    scopus 로고
    • Formalizing reliability in the taxonomic congruence approach
    • Li B, Lecointre G, (2009) Formalizing reliability in the taxonomic congruence approach. Zool Scripta 38: 101-112.
    • (2009) Zool Scripta , vol.38 , pp. 101-112
    • Li, B.1    Lecointre, G.2
  • 57
    • 0041386108 scopus 로고    scopus 로고
    • MRBAYES 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F, Huelsenbeck JP, (2003) MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 58
    • 20444386770 scopus 로고    scopus 로고
    • v2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University, Sweden
    • Nylander JAA (2004) MrModeltest v2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University, Sweden.
    • (2004) MrModeltest
    • Nylander, J.A.A.1
  • 59
    • 77953325276 scopus 로고    scopus 로고
    • v1.5. Available
    • Rambaut A, Drummond AJ (2009) Tracer v1.5. Available: http://beast.bio.ed.ac.uk/Tracer. Accessed 2011 Jul.
    • (2009) Tracer
    • Rambaut, A.1    Drummond, A.J.2
  • 60
    • 39149141072 scopus 로고    scopus 로고
    • AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics
    • Nylander JAA, Wilgenbusch JC, Warren DL, Swofford DL, (2008) AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics. Bioinformatics 24: 581-583.
    • (2008) Bioinformatics , vol.24 , pp. 581-583
    • Nylander, J.A.A.1    Wilgenbusch, J.C.2    Warren, D.L.3    Swofford, D.L.4
  • 61
    • 80052648977 scopus 로고    scopus 로고
    • Developing hypotheses on rostral shield evolution in head-first digging squamates from a molecular phylogeny and new species of the genus Paracontias (Scincidae)
    • Miralles A, Köhler J, Vieites DR, Glaw F, Vences M, (2011c) Developing hypotheses on rostral shield evolution in head-first digging squamates from a molecular phylogeny and new species of the genus Paracontias (Scincidae). Org Diver Evol 11: 135-150.
    • (2011) Org Diver Evol , vol.11 , pp. 135-150
    • Miralles, A.1    Köhler, J.2    Vieites, D.R.3    Glaw, F.4    Vences, M.5
  • 65
    • 80955178782 scopus 로고    scopus 로고
    • DNA barcoding-based species delimitation increases species count of Eois (Geometridae) moths in a well-studied tropical mountain forest by up to 50%
    • Strutzenberger P, Brehm G, Fiedler K, (2011) DNA barcoding-based species delimitation increases species count of Eois (Geometridae) moths in a well-studied tropical mountain forest by up to 50%. Insect Science. 18: 349-362.
    • (2011) Insect Science , vol.18 , pp. 349-362
    • Strutzenberger, P.1    Brehm, G.2    Fiedler, K.3
  • 66
    • 0000272378 scopus 로고    scopus 로고
    • Detecting cryptic species using allozyme data
    • ed by R. C. Bruce, R. G. Jaeger and L. D. Houck. Kluwer Academic/Plenum Publishers, New York
    • Highton R (2000) Detecting cryptic species using allozyme data. Pp. 215-241 in "The Biology of Plethodontid Salamanders", ed by R. C. Bruce, R. G. Jaeger and L. D. Houck. Kluwer Academic/Plenum Publishers, New York.
    • (2000) The Biology of Plethodontid Salamanders , pp. 215-241
    • Highton, R.1
  • 67
    • 0032435215 scopus 로고    scopus 로고
    • Patterns of postzygotic isolation in frogs
    • Sasa MM, Chippindale PT, Johnson NA, (1998) Patterns of postzygotic isolation in frogs. Evolution 52: 1811-1820.
    • (1998) Evolution , vol.52 , pp. 1811-1820
    • Sasa, M.M.1    Chippindale, P.T.2    Johnson, N.A.3
  • 68
    • 66249138888 scopus 로고    scopus 로고
    • Vast underestimation of Madagascar's biodiversity evidenced by an integrative amphibian inventory
    • Vieites DR, Wollenberg KC, Andreone F, Köhler J, Glaw F, et al. (2009) Vast underestimation of Madagascar's biodiversity evidenced by an integrative amphibian inventory. Proc Natl Acad Sci U S A. 106: 8267-8272.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 8267-8272
    • Vieites, D.R.1    Wollenberg, K.C.2    Andreone, F.3    Köhler, J.4    Glaw, F.5
  • 69
    • 78651457490 scopus 로고    scopus 로고
    • Integrating DNA barcode data and taxonomic practice: determination, discovery, and description
    • Goldstein PZ, DeSalle R, (2011) Integrating DNA barcode data and taxonomic practice: determination, discovery, and description. Bioessays 33: 135-147.
    • (2011) Bioessays , vol.33 , pp. 135-147
    • Goldstein, P.Z.1    DeSalle, R.2
  • 70
    • 0013648423 scopus 로고
    • Testing nominal species boundaries using gene flow statistics: taxonomy of two hybridizing admiral butterflies (Limenitis: Nymphalidae)
    • Porter AH, (1990) Testing nominal species boundaries using gene flow statistics: taxonomy of two hybridizing admiral butterflies (Limenitis: Nymphalidae). Syst Zool 39: 131-147.
    • (1990) Syst Zool , vol.39 , pp. 131-147
    • Porter, A.H.1
  • 71
    • 0001769347 scopus 로고
    • Geographic variation and speciation in the torrent salamanders of the genus Rhyacotriton (Caudata: Rhyacotritonidae)
    • Good DA, Wake DB, (1992) Geographic variation and speciation in the torrent salamanders of the genus Rhyacotriton (Caudata: Rhyacotritonidae). Univ Calif Pub Zool 126: 1-91.
    • (1992) Univ Calif Pub Zool , vol.126 , pp. 1-91
    • Good, D.A.1    Wake, D.B.2
  • 72
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard JK, Stephens M, Donnelly P, (2000) Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 73
    • 0041817568 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies
    • Falush D, Stephens M, Pritchard JK, (2003) Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164: 1567-1587.
    • (2003) Genetics , vol.164 , pp. 1567-1587
    • Falush, D.1    Stephens, M.2    Pritchard, J.K.3
  • 74
    • 21244479740 scopus 로고    scopus 로고
    • Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study
    • Evanno G, Regnaut S, Goudet J, (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol 14: 2611-2620.
    • (2005) Mol Ecol , vol.14 , pp. 2611-2620
    • Evanno, G.1    Regnaut, S.2    Goudet, J.3
  • 75
    • 77956597278 scopus 로고    scopus 로고
    • v0.6.7. Available
    • Earl DA (2011) Structure Harvester v0.6.7. Available://users.soe.ucsc.edu/dearl/software/structureHarvester/. Accessed 2011 Jul.
    • (2011) Structure Harvester
    • Earl, D.A.1
  • 76
    • 0012173586 scopus 로고
    • The species as a field for recombination
    • (ed. E. Mayr)
    • Carson HL (1957) The species as a field for recombination. In: The Species Problem (ed. E. Mayr), 23-38. Washington DC: AAAS.
    • (1957) The Species Problem , pp. 23-38
    • Carson, H.L.1
  • 77
    • 0001681106 scopus 로고
    • The irrelevance of allele tree topologies for species delimitation, and a non-topological alternative
    • Doyle J, (1995) The irrelevance of allele tree topologies for species delimitation, and a non-topological alternative. Syst Bot 20: 574-588.
    • (1995) Syst Bot , vol.20 , pp. 574-588
    • Doyle, J.1
  • 78
    • 0035071957 scopus 로고    scopus 로고
    • A new statistical method for haplotype reconstruction from population data
    • Stephens M, Smith NJ, Donnelly P, (2001) A new statistical method for haplotype reconstruction from population data. Am J Hum Gen 68: 978-989.
    • (2001) Am J Hum Gen , vol.68 , pp. 978-989
    • Stephens, M.1    Smith, N.J.2    Donnelly, P.3
  • 79
    • 65649117685 scopus 로고    scopus 로고
    • DnaSP v5: A software for comprehensive analysis of DNA polymorphism data
    • Librado P, Rozas J, (2009) DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: 1451-1452.
    • (2009) Bioinformatics , vol.25 , pp. 1451-1452
    • Librado, P.1    Rozas, J.2
  • 80
    • 0026662698 scopus 로고
    • A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation
    • Templeton AR, Crandall KA, Sing CF, (1992) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. Genetics 132: 619-633.
    • (1992) Genetics , vol.132 , pp. 619-633
    • Templeton, A.R.1    Crandall, K.A.2    Sing, C.F.3
  • 81
    • 0033771358 scopus 로고    scopus 로고
    • TCS: a computer program to estimate gene genealogies
    • Clement M, Posada D, Crandall KA, (2000) TCS: a computer program to estimate gene genealogies. Mol Ecol 9: 1657-1660.
    • (2000) Mol Ecol , vol.9 , pp. 1657-1660
    • Clement, M.1    Posada, D.2    Crandall, K.A.3
  • 82
    • 0041817551 scopus 로고    scopus 로고
    • Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci
    • Rannala B, Yang Z, (2003) Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci. Genetics 164: 1645-1656.
    • (2003) Genetics , vol.164 , pp. 1645-1656
    • Rannala, B.1    Yang, Z.2
  • 84
    • 0026806963 scopus 로고
    • Falsification of a single species hypothesis using the coefficient of variation: A simulation approach
    • Cope DA, Lacy MG, (1992) Falsification of a single species hypothesis using the coefficient of variation: A simulation approach. Am J Phys Anthropol 89: 359-378.
    • (1992) Am J Phys Anthropol , vol.89 , pp. 359-378
    • Cope, D.A.1    Lacy, M.G.2
  • 86
    • 84959755121 scopus 로고
    • The evolutionary species concept reconsidered
    • Wiley EO, (1978) The evolutionary species concept reconsidered. Syst Zool 27: 17-26.
    • (1978) Syst Zool , vol.27 , pp. 17-26
    • Wiley, E.O.1
  • 87
    • 0036755296 scopus 로고    scopus 로고
    • On biological species, species concepts and individuation in the natural world
    • Mayden RL, (2002) On biological species, species concepts and individuation in the natural world. Fish Fish 3: 171-196.
    • (2002) Fish Fish , vol.3 , pp. 171-196
    • Mayden, R.L.1
  • 88
    • 33747078134 scopus 로고    scopus 로고
    • Bayesian identification of admixture events using multilocus molecular markers
    • Corander J, Marttinen P, (2006) Bayesian identification of admixture events using multilocus molecular markers. Mol Ecol 15: 2833-2843.
    • (2006) Mol Ecol , vol.15 , pp. 2833-2843
    • Corander, J.1    Marttinen, P.2
  • 89
    • 33745041278 scopus 로고    scopus 로고
    • Relative performance of Bayesian clustering software for inferring population substructure and individual assignment at low levels of population differentiation
    • Latch EK, Dharmarajan G, Glaubitz JC, Rhodes OE Jr, (2006) Relative performance of Bayesian clustering software for inferring population substructure and individual assignment at low levels of population differentiation. Conserv Genet 7: 295-302.
    • (2006) Conserv Genet , vol.7 , pp. 295-302
    • Latch, E.K.1    Dharmarajan, G.2    Glaubitz, J.C.3    Rhodes Jr., O.E.4
  • 90
    • 79953123367 scopus 로고    scopus 로고
    • The computer program STRUCTURE does not reliably identify the main genetic clusters within species: simulations and implications for human population structure
    • Kalinowski ST, (2011) The computer program STRUCTURE does not reliably identify the main genetic clusters within species: simulations and implications for human population structure. Heredity 106: 625-632.
    • (2011) Heredity , vol.106 , pp. 625-632
    • Kalinowski, S.T.1
  • 91
    • 84872480881 scopus 로고    scopus 로고
    • Genome-wide RAD sequence data provide unprecedented resolution of species boundaries and relationships in the Lake Victoria cichlid adaptive radiation
    • Wagner CE, Keller I, Wittwer S, Selz OM, Mwaiko S, et al. (2013) Genome-wide RAD sequence data provide unprecedented resolution of species boundaries and relationships in the Lake Victoria cichlid adaptive radiation. Mol Ecol 22: 787-798.
    • (2013) Mol Ecol , vol.22 , pp. 787-798
    • Wagner, C.E.1    Keller, I.2    Wittwer, S.3    Selz, O.M.4    Mwaiko, S.5
  • 92
    • 35448938494 scopus 로고    scopus 로고
    • Tracing the first step to speciation - ecological and genetic differentiation of a salamander population in a small forest
    • Steinfartz S, Weitere M, Tautz D, (2007) Tracing the first step to speciation- ecological and genetic differentiation of a salamander population in a small forest. Mol Ecol 16: 4550-4561.
    • (2007) Mol Ecol , vol.16 , pp. 4550-4561
    • Steinfartz, S.1    Weitere, M.2    Tautz, D.3
  • 93
    • 40349093381 scopus 로고    scopus 로고
    • The effects of sample size on population genetic diversity estimates in song sparrows Melospiza melodia
    • Pruett CL, Winker K, (2008) The effects of sample size on population genetic diversity estimates in song sparrows Melospiza melodia. J Avian Biol 39: 252-256.
    • (2008) J Avian Biol , vol.39 , pp. 252-256
    • Pruett, C.L.1    Winker, K.2
  • 94
    • 84555177826 scopus 로고    scopus 로고
    • Determining species boundaries in a world full of rarity: singletons, species delimitation methods
    • Lim GS, Balke M, Meier R, (2012) Determining species boundaries in a world full of rarity: singletons, species delimitation methods. Syst Biol 61: 165-169.
    • (2012) Syst Biol , vol.61 , pp. 165-169
    • Lim, G.S.1    Balke, M.2    Meier, R.3
  • 95
    • 33644592024 scopus 로고    scopus 로고
    • Genetic relatedness of the Preble's meadow jumping mouse (Zapus hudsonius preblei) to nearby subspecies of Z. hudsonius as inferred from variation in cranial morphology, mitochondrial DNA and microsatellite, DNA: implications for taxonomy and conservation
    • Ramey RRII, Liu HP, Epps CW, Carpenter LM, Wehausen JD, (2005) Genetic relatedness of the Preble's meadow jumping mouse (Zapus hudsonius preblei) to nearby subspecies of Z. hudsonius as inferred from variation in cranial morphology, mitochondrial DNA and microsatellite, DNA: implications for taxonomy and conservation, Anim Conserv. 8: 329-346.
    • (2005) Anim Conserv , vol.8 , pp. 329-346
    • Ramey, R.R.I.I.1    Liu, H.P.2    Epps, C.W.3    Carpenter, L.M.4    Wehausen, J.D.5
  • 96
    • 33646733860 scopus 로고    scopus 로고
    • Biogeographic evolution of Madagascars microendemic biota
    • Wilmé L, Goodman SM, Ganzhorn JU, (2006) Biogeographic evolution of Madagascars microendemic biota. Science 312: 1063-1065.
    • (2006) Science , vol.312 , pp. 1063-1065
    • Wilmé, L.1    Goodman, S.M.2    Ganzhorn, J.U.3
  • 98
    • 0642281749 scopus 로고    scopus 로고
    • A Short History of the Polymerase Chain Reaction
    • Bartlett JMS, Stirling D, (2003) A Short History of the Polymerase Chain Reaction. PCR Protocols. 226: 3-6.
    • (2003) PCR Protocols , vol.226 , pp. 3-6
    • Bartlett, J.M.S.1    Stirling, D.2
  • 99
    • 22944437097 scopus 로고    scopus 로고
    • Molecular clocks: four decades of evolution
    • Kumar S, (2005) Molecular clocks: four decades of evolution. Nature 6: 654-662.
    • (2005) Nature , vol.6 , pp. 654-662
    • Kumar, S.1
  • 104
    • 84856466615 scopus 로고    scopus 로고
    • Collaborative electronic infrastructures to accelerate taxonomic research
    • Smith VS, Penev L, (2011) Collaborative electronic infrastructures to accelerate taxonomic research. ZooKeys 150: 1-3.
    • (2011) ZooKeys , vol.150 , pp. 1-3
    • Smith, V.S.1    Penev, L.2
  • 105
    • 84866503246 scopus 로고    scopus 로고
    • A toolbox for integrative species delimitation in Machilis jumping bristletails (Microcoryphia: Machilidae)
    • Dejaco T, Arthofer W, Sheets HD, Moder K, Thaler-Knoflach B, et al. (2012) A toolbox for integrative species delimitation in Machilis jumping bristletails (Microcoryphia: Machilidae). Zool Anz 251: 307-316.
    • (2012) Zool Anz , vol.251 , pp. 307-316
    • Dejaco, T.1    Arthofer, W.2    Sheets, H.D.3    Moder, K.4    Thaler-Knoflach, B.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.