Detection of two cryptic taxa in Meristogenys amoropalamus (Amphibia, Ranidae) through nuclear and mitochondrial DNA analyses

Zootaxa

Volumn , Issue 1843, 2008, Pages 24-34

  Shimada, Tomohiko ^a   Matsui, Masafumi ^b   Yambun, Paul ^c   Lakim, Maklarin ^c   Mohamed, Maryati ^d  

^a Ukyo ku   (Japan)

^b KYOTO UNIVERSITY   (Japan)

^c Research and Education Division   (Malaysia)

^d UNIVERSITI MALAYSIA SABAH   (Malaysia)

Author keywords

Borneo; Cryptic taxa; Intraspecific polymorphism of mitochondria; Larval morphology; Meristogenys amoropalamus

Indexed keywords

AMPHIBIA; ANURA; MERISTOGENYS; RANIDAE;

EID: 49649094989     PISSN: 11755326     EISSN: 11755334     Source Type: Journal    
DOI: 10.11646/zootaxa.1843.1.2     Document Type: Article

References (32)

1. Ballard, J.W.O. & Whitlock, M.C. (2004) The incomplete natural history of mitochondria. Molecular Ecology, 13, 729-744.
2. Dubois, A. (1992) Notes sur la classification des Ranidae (Amphibiens Anoures). Bulletin Mensuel de la Société Linnéenne de Lyon, 61, 305-352.
3. Felsenstein, J. (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution, 39, 783-791.
4. Fouquet, A., Vences, M., Salducci, M.D., Meyer, A., Marty, C., Blanc, M. & Gilles, A. (2007) Revealing cryptic diversity using molecular phylogenetics and phylogeography in frogs of the Scinax ruber and Rhinella margaritifera species groups. Molecular Phylogenetics and Evolution, 43, 567-582.
5. Gonçalves, H., Martínez-Solano, I., Ferrand, N. & García-Parrs, M. (2007) Conflicting phylogenetic signal of nuclear vs mitochondrial DNA markers in midwife toads (Anura, Discoglossidae, Alytes): deep coalescence or ancestral hybridization? Molecular Phylogenetics and Evolution, 44, 494-500.
6. Hall, T.A. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/ 98/NT. Nucleic Acids Symposium Series, 41, 95-98.
7. Hasegawa, M., Kishino, H. & Yano, T. (1985) Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. Journal of Molecular Evolution, 22, 160-174.
8. Hedges, S.B. (1992) The number of replications needed for accurate estimation of the bootstrap P value in phylogenetic studies. Molecular Biology and Evolution, 9, 366-369.
9. Holder, M.T., Anderson, J.A. & Holloway, A.K. (2001) Difficulties in detecting hybridization. Systematic Biology, 50, 978-982.
10. Huelsenbeck, J.P. & Ronquist, F.R. (2001) MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics, 17, 754-755.
11. Inger, R.F. & Stuebing, R.B. (2005) A field guide to the frogs of Borneo, Second Edition. Natural History Publications, Kota Kinabalu, Malaysia, 1-201.
12. Innan, H. & Nordborg, M. (2002) Recombination or mutational hot spots in human mtDNA? Molecular Biology and Evolution, 19, 1122-1127.
13. Kimura, M. (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution, 16, 111-120.
14. Köhler, J., Vieites, D.R., Bonett, R.M., Hita García, F., Glaw, F., Steinke, D. & Vences, M. (2005) New amphibians and global conservation: a boost in species discoveries in a highly endangered vertebrate group. Bioscience, 55, 693-696.
15. Maddison, W.P. (1997) Gene trees in species trees. Systematic Biology, 46, 523-536.
16. Matsui, M. (1986) Three new species of Amolops from Borneo (Amphibia, Anura, Ranidae). Copeia, 1986, 623-630.
17. Matsui, M., Ito, H., Shimada, T., Ota, H., Saidapur, S.K., Khonsue, W., Tanaka-Ueno, T. & Wu, GF. (2005) Taxonomic relationships within the pan-oriental narrow-mouth toad Microhyla ornata as revealed by mtDNA analysis (Amphibia, Anura, Microhylidae). Zoological Science, 22, 489-495.
18. Matsui, M., Maryati, M., Shimada, T. & Sudin A. (2007) Resurrection of Staurois parvus from S. tuberilinguis from Borneo (Amphibia, Ranidae). Zoological Science, 24, 101-106.
19. Matsui, M., Shimada, T., Liu, W.Z., Maryati, M., Khonsue, W. & Orlov, N. (2006) Phylogenetic relationships of the oriental torrent frogs of the genus Amolops and its allies (Amphibia, Anura, Ranidae). Molecular Phylogenetics and Evolution, 38, 659-666.
20. Nylander, J.A.A. (2002) MrModeltest v1.0b program distributed by the author. Available from http://www.ebc.uu.se/systzoo/staff/nylander.html (accessed 8 June 2008)
21. Palumbi, S.R., Martin, A., Romano, S., McMillan, W.O., Stice, L. & Grabowski, G. (1991) "The simple fool's guide to PCR, version 2.0." Privately published, compiled by Palumbi S., Department of Zoology, University of Hawaii, Honolulu.
22. Rodriguez, F., Oliver, J.F., Marin, A. & Medina, J.R. (1990) The general stochastic model of nucleotide substitution. Journal of Theoretical Biology, 142, 485-501.
23. Roelants, K., Jiang, J. & Bossuyt, F. (2003) Endemic ranid (Amphibia: Anura) genera in southern mountain ranges of the Indian subcontinent represent ancient frog lineages: evidence from molecular data. Molecular Phylogenetics and Evolution, 31, 730-740.
24. Sheffler, I.E. (1999) Mitochondria. John Wiley and Sons. Inc., New York, 1-462p.
25. Shimada, T., Matsui, M., Sudin, A. & Maryati, M. (2007) Identity of larval Meristogenys from a single stream in Sabah, Malaysia (Amphibia: Ranidae). Zoological Journal of the Linnean Society, 151, 173-189.
26. Smith, S.A., Stephens, P.R. & Wiens, J.J. (2005) Replicate patterns of species richness, historical biogeography, and phylogeny in Holarctic treefrogs. Evolution, 59, 2433-2450.
27. Sota, T. & Vogler, A. (2001) Incongruence of mitochondrial and nuclear gene trees in the carabid beetles Ohomopterus. Systematic Biology, 50, 39-59.
28. Stephens, M., Smith, N.J. & Donnelly, R (2001) A new statistical method for haplotype reconstruction from population data. American Journal of Human Genetics, 68, 978-989.
29. Swofford, D.L. (2002) PAUP*: Phylogenetic analysis using parsimony (*and other methods), Version 4. Sinauer Associates, Sunderland, MA, USA.
30. Tanaka-Ueno, T., Matsui, M., Chen, S.L., Takenaka, O. & Ota, H. (1998) Phylogenetic relationships of brown frogs from Taiwan and Japan assessed by mitochondrial cytochrome b gene sequences (Rana: Ranidae). Zoological Science, 15, 283-288.
31. Wiens, J., Fetzner, J.W.Jr., Parkinson, C.L. & Reeder, T.W (2005) Hylid frog phylogeny and sampling strategies for speciose clades. Systematic Biology, 54, 719-748.
32. Yang, D. (1991) Phylogenetic systematics of the Amolops group of ranid frogs of Southeastern Asia and the Greater Sunda Islands. Fieldiana: Zoology, New Series, 63, 1-42.