Effects of sugars on the thermal stability of a protein

Journal of Chemical Physics

Volumn 138, Issue 24, 2013, Pages

  Oshima, Hiraku ^a   Kinoshita, Masahiro ^a  

^a KYOTO UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

EXPERIMENTAL DATUM; EXPERIMENTAL OBSERVATION; GLUCOSE CONCENTRATION; HARD-SPHERE SOLVENTS; INTEGRAL-EQUATION THEORY; MANY-BODY CORRELATIONS; STABILIZATION EFFECTS; THERMAL DENATURATIONS;

BINARY MIXTURES; CRYSTAL ATOMIC STRUCTURE; GLUCOSE; MOLECULES; SOLVENTS; SUGAR (SUCROSE); THERMODYNAMIC STABILITY;

PROTEINS;

CARBOHYDRATE; PROTEIN;

ARTICLE; CHEMISTRY; PROTEIN STABILITY; TEMPERATURE;

CARBOHYDRATES; PROTEIN STABILITY; PROTEINS; TEMPERATURE;

EID: 84879988302     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.4811287     Document Type: Article

References (72)

1. T. Yoshidome, M. Kinoshita, S. Hirota, N. Baden, and M. Terazima, J. Chem. Phys. 128, 225104 (2008). 10.1063/1.2929836
2. Y. Harano and M. Kinoshita, Chem. Phys. Lett. 399, 342 (2004). 10.1016/j.cplett.2004.09.140
3. Y. Harano and M. Kinoshita, Biophys. J. 89, 2701 (2005). 10.1529/biophysj.104.057604
4. Y. Harano and M. Kinoshita, J. Phys. Condens. Matter 18, L107 (2006). 10.1088/0953-8984/18/7/L01
5. Y. Harano and M. Kinoshita, J. Chem. Phys. 125, 024910 (2006). 10.1063/1.2217011
6. Y. Harano, T. Yoshidome, and M. Kinoshita, J. Chem. Phys. 129, 145103 (2008). 10.1063/1.2991176
7. T. Yoshidome, Y. Harano, and M. Kinoshita, Phys. Rev. E 79, 011912 (2009). 10.1103/PhysRevE.79.011912
8. K. Amano, T. Yoshidome, Y. Harano, K. Oda, and M. Kinoshita, Chem. Phys. Lett. 474, 190 (2009). 10.1016/j.cplett.2009.04.025
9. T. Yoshidome and M. Kinoshita, Phys. Rev. E 79, 030905 (R) (2009). 10.1103/PhysRevE.79.030905
10. H. Oshima, T. Yoshidome, K. Amano, and M. Kinoshita, J. Chem. Phys. 131, 205102 (2009). 10.1063/1.3265985
11. T. Yoshidome and M. Kinoshita, Phys. Chem. Chem. Phys. 14, 14554 (2012). 10.1039/c2cp41738c
12. M. Kinoshita, " A new theoretical approach to biological self-assembly.," Biophys. Rev. (in press). 10.1007/s12551-013-0100-8
13. S. Yasuda, T. Yoshidome, H. Oshima, R. Kodama, Y. Harano, and M. Kinoshita, J. Chem. Phys. 132, 065105 (2010). 10.1063/1.3319509
14. S. Yasuda, H. Oshima, and M. Kinoshita, J. Chem. Phys. 137, 135103 (2012). 10.1063/1.4755755
15. M. Kinoshita, Chem. Eng. Sci. 61, 2150 (2006). 10.1016/j.ces.2004.02.023
16. Y. Snir and R. D. Kamien, Phys. Rev. E 75, 051114 (2007). 10.1103/PhysRevE.75.051114
17. H. Hansen-Goos, R. Roth, K. Mecke, and S. Dietrich, Phys. Rev. Lett. 99, 128101 (2007). 10.1103/PhysRevLett.99.128101
18. C. Poletto, A. Giacometti, A. Trovato, J. R. Banavar, and A. Maritan, Phys. Rev. E 77, 061804 (2008). 10.1103/PhysRevE.77.061804
19. K. Oda, R. Kodama, T. Yoshidome, M. Yamanaka, Y. Sambongi, and M. Kinoshita, J. Chem. Phys. 134, 025101 (2011). 10.1063/1.3519814
20. J. H. Crowe and L. M. Crowe, Nat. Biotechnol. 18, 145 (2000). 10.1038/72580
21. J. F. Back, D. Oakenfull, and M. B. Smith, Biochemistry 18, 5191 (1979). 10.1021/bi00590a025
22. K. Gekko and S. Koga, J. Biochem. 94, 199 (1983).
23. N. K. Poddar, Z. A. Ansari, R. K. B. Singh, A. A. Moosavi-Movahedi, and F. Ahmad, Biophys. Chem. 138, 120 (2008). 10.1016/j.bpc.2008.09.013
24. P. G. Kusalik and G. N. Patey, J. Chem. Phys. 88, 7715 (1988). 10.1063/1.454286
25. P. G. Kusalik and G. N. Patey, Mol. Phys. 65, 1105 (1988). 10.1080/00268978800101631
26. M. Kinoshita, J. Chem. Phys. 128, 024507 (2008). 10.1063/1.2823733
27. R. Roth, Y. Harano, and M. Kinoshita, Phys. Rev. Lett. 97, 078101 (2006). 10.1103/PhysRevLett.97.078101
28. M. Kinoshita, Y. Harano, and R. Akiyama, J. Chem. Phys. 125, 244504 (2006). 10.1063/1.2403873
29. N. M. Cann and G. N. Patey, J. Chem. Phys. 106, 8165 (1997). 10.1063/1.473822
30. R. Kodama, R. Roth, Y. Harano, and M. Kinoshita, J. Chem. Phys. 135, 045103 (2011). 10.1063/1.3617247
31. J. Fitter, Biophys. J. 84, 3924 (2003). 10.1016/S0006-3495(03)75120-0
32. T. Imai, Y. Harano, M. Kinoshita, A. Kovalenko, and F. Hirata, J. Chem. Phys. 126, 225102 (2007). 10.1063/1.2743962
33. T. Imai, Y. Harano, M. Kinoshita, A. Kovalenko, and F. Hirata, J. Chem. Phys. 125, 024911 (2006). 10.1063/1.2213980
34. B. R. Brooks, R. E. Bruccoleri, B. D. Olafson, D. J. States, S. Swaminathan, and M. Karplus, J. Comput. Chem. 4, 187 (1983). 10.1002/jcc.540040211
35. A. D. MacKerell Jr., D. Bashford, M. Bellott, R. L. Dunbrack Jr., J. D. Evanseck, M. J. Field, S. Fischer, J. Gao, H. Guo, S. Ha, D. Joseph-McCarthy, L. Kuchnir, K. Kuczera, F. T. K. Lau, C. Mattos, S. Michnick, T. Ngo, D. T. Nguyen, B. Prodhom, I. W. E. Reiher, B. Roux, M. Schlenkrich, J. C. Smith, R. Stote, J. Straub, M. Watanabe, J. Wiórkiewicz-Kuczera, D. Yin, and M. Karplus, J. Phys. Chem. B 102, 3586 (1998). 10.1021/jp973084f
36. M. Feig, J. Karanicolas, and C. L. Brooks III, J. Mol. Graphics Modell. 22, 377 (2004). 10.1016/j.jmgm.2003.12.005
37. CRC Handbook of Chemistry and Physics, 85th ed., edited by, D. R. Lide, (CRC Press, Boca Raton, 2004).
38. G. Graziano, Int. J. Biol. Macromol. 50, 230 (2012). 10.1016/j.ijbiomac. 2011.10.025
39. T. F. O'Connor, P. G. Debenedetti, and J. D. Carbeck, Biophys. Chem. 127, 51 (2007). 10.1016/j.bpc.2006.12.004
40. A. J. Saunders, P. R. Davis-Searles, D. L. Allen, G. J. Pielak, and D. A. Erie, Biopolymers 53, 293 (2000). 10.1002/(SICI)1097-0282(20000405)53:4<293: :AID-BIP2>3.0.CO;2-T
41. T. Yoshidome, K. Oda, Y. Harano, R. Roth, Y. Sugita, M. Ikeguchi, and M. Kinoshita, Proteins 77, 950 (2009). 10.1002/prot.22520
42. S. Yasuda, T. Yoshidome, Y. Harano, R. Roth, H. Oshima, K. Oda, Y. Sugita, M. Ikeguchi, and M. Kinoshita, Proteins 79, 2161 (2011). 10.1002/prot.23036
43. D. Beglov and B. Roux, J. Chem. Phys. 103, 360 (1995). 10.1063/1.469602
44. M. Ikeguchi and J. Doi, J. Chem. Phys. 103, 5011 (1995). 10.1063/1.470587
45. M. Kinoshita, J. Chem. Phys. 116, 3493 (2002). 10.1063/1.1445106
46. J.-P. Hansen and L. R. McDonald, Theory of Simple Liquids, 3rd ed. (Academic, London, 2006).
47. M. Kinoshita and M. Harada, Mol. Phys. 65, 599 (1988). 10.1080/00268978800101271
48. M. Kinoshita, S. Iba, K. Kuwamoto, and M. Harada, J. Chem. Phys. 105, 7177 (1996). 10.1063/1.472520
49. M. Kinoshita, S. Iba, K. Kuwamoto, and M. Harada, J. Chem. Phys. 105, 7184 (1996). 10.1063/1.472521
50. T. Morita, Prog. Theor. Phys. 23, 829 (1960). 10.1143/PTP.23.829
51. T. Morita and K. Hiroike, Prog. Theor. Phys. 25, 537 (1961). 10.1143/PTP.25.537
52. H. S. Ashbaugh and L. R. Pratt, Rev. Mod. Phys. 78, 159 (2006). 10.1103/RevModPhys.78.159
53. M. Kinoshita, N. Matubayasi, Y. Harano, and M. Nakahara, J. Chem. Phys. 124, 024512 (2006). 10.1063/1.2137708
54. P.-M. König, R. Roth, and K. R. Mecke, Phys. Rev. Lett. 93, 160601 (2004). 10.1103/PhysRevLett.93.160601
55. M. L. Connolly, J. Appl. Crystallogr. 16, 548 (1983). 10.1107/S0021889883010985
56. M. L. Connolly, J. Am. Chem. Soc. 107, 1118 (1985). 10.1021/ja00291a006
57. S. Asakura and F. Oosawa, J. Chem. Phys. 22, 1255 (1954). 10.1063/1.1740347
58. S. Asakura and F. Oosawa, J. Polym. Sci. 33, 183 (1958). 10.1002/pol.1958.1203312618
59. H. S. Frank and M. W. Evans, J. Chem. Phys. 13, 507 (1945). 10.1063/1.1723985
60. W. Kauzmann, Adv. Protein Chem. 14, 1 (1959). 10.1016/S0065-3233(08) 60608-7
61. C. L. Dias, T. Ala-Nissila, M. Karttunen, I. Vattulainen, and M. Grant, Phys. Rev. Lett. 100, 118101 (2008). 10.1103/PhysRevLett.100.118101
62. G. Hummer, S. Garde, A. E. García, M. E. Paulaitis, and L. R. Pratt, Proc. Natl. Acad. Sci. U.S.A. 95, 1552 (1998). 10.1073/pnas.95.4.1552
63. A. Paliwal, D. Asthagiri, D. P. Bossev, and M. E. Paulaitis, Biophys. J. 87, 3479 (2004). 10.1529/biophysj.104.050526
64. J. R. Grigera and A. N. McCarthy, Biophys. J. 98, 1626 (2010). 10.1016/j.bpj.2009.12.4298
65. R. Sarma and S. Paul, J. Chem. Phys. 136, 114510 (2012). 10.1063/1.3694834
66. J. C. Lee and S. N. Timasheff, J. Biol. Chem. 256, 7193 (1981).
67. T. Arakawa and S. N. Timasheff, Biochemistry 21, 6536 (1982). 10.1021/bi00268a033
68. A. Lerbret, P. Bordat, F. Affouard, A. Hédoux, Y. Guinet, and M. Descamps, J. Phys. Chem. B 111, 9410 (2007). 10.1021/jp071946z
69. F.-F. Liu, L. Ji, L. Zhang, X.-Y. Dong, and Y. Sun, J. Chem. Phys. 132, 225103 (2010). 10.1063/1.3453713
70. M. Kinoshita and Y. Harano, Bull. Chem. Soc. Jpn. 78, 1431 (2005). 10.1246/bcsj.78.1431
71. F. Hofmeister, Arch. Exp. Pathol. Pharmakol. 24, 247 (1888). 10.1007/BF01918191
72. Y. Zhang and P. S. Cremer, Curr. Opin. Chem. Biol. 10, 658 (2006). 10.1016/j.cbpa.2006.09.020 Technology Technology